Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G2193 Fragaria x ananassa HOM05D006471 ORTHO05D008157 1.1e-90 336.7 168 100.0
FvH4_4g37140 Fragaria vesca HOM05D006471 ORTHO05D008157 1.1e-74 283.5 137 99.3
FAN07G1501 Fragaria x ananassa HOM05D002605 ORTHO05D002842 1.4e-71 273.1 137 95.6
FAN17G0671 Fragaria x ananassa HOM05D006471 ORTHO05D008157 2.7e-70 268.9 137 94.9
RcHm_v2.0_Chr4g0446941 Rosa chinensis HOM05D006471 ORTHO05D008157 6.9e-66 254.2 137 88.3
Prupe.1G349200 Prunus persica HOM05D006471 ORTHO05D008157 4.2e-55 218.4 138 76.8
MD16G1004200 Malus domestica HOM05D006471 ORTHO05D008157 3.3e-52 208.8 139 75.5
TPR.G4059 Trifolium pratense HOM05D006471 ORTHO05D008157 6.3e-51 204.5 139 74.8
CiPaw.05G172000 Carya illinoinensis HOM05D006471 ORTHO05D008157 1.1e-50 203.8 144 68.1
QL08p056974 Quercus lobata HOM05D006471 ORTHO05D008157 1.8e-50 203.0 138 72.5
CANSAT78G1799 Cannabis sativa HOM05D006471 ORTHO05D008157 2.4e-50 202.6 138 71.7
Psat6g234000 Pisum sativum HOM05D006471 ORTHO05D008157 3.1e-50 202.2 139 72.7
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 5.9e-49 198.0 137 72.3
Ca_11258_v3 Cicer arietinum L. HOM05D000200 ORTHO05D001546 5.9e-49 198.0 139 71.9
Medtr1g114560 Medicago truncatula HOM05D006471 ORTHO05D008157 7.7e-49 197.6 139 71.9
Glyma.10G286400 Glycine max HOM05D006471 ORTHO05D008157 1.7e-48 196.4 139 71.9
Haze_11788 Corylus avellana HOM05D006471 ORTHO05D008157 2.2e-48 196.1 143 69.2
arahy.Tifrunner.gnm1.ann1.V4ETXF Arachis hypogaea HOM05D006471 ORTHO05D008157 3.8e-48 195.3 135 73.3
Cfa014781 Carpinus fangiana HOM05D006857 ORTHO05D008679 6.5e-48 194.5 143 69.2
Cfa008776 Carpinus fangiana HOM05D006471 ORTHO05D008157 1.4e-47 193.4 143 68.5
Lj5g0013377 Lotus japonicus HOM05D006471 ORTHO05D008157 4.7e-46 188.3 137 70.1
ClCG02G014150 Citrullus lanatus HOM05D006471 ORTHO05D008157 7.9e-46 187.6 137 66.4
GSVIVG01034416001 Vitis vinifera HOM05D006471 ORTHO05D008157 1.4e-45 186.8 138 68.1
VMungo0720G2382 Vigna mungo HOM05D006471 ORTHO05D008157 1.8e-45 186.4 139 70.5
Rhsim12G0193800 Rhododendron simsii HOM05D006471 ORTHO05D008157 5.1e-45 184.9 143 65.0
MELO3C011756.2 Cucumis melo HOM05D006471 ORTHO05D008157 1.1e-44 183.7 137 65.0
Manes.04G162800 Manihot esculenta HOM05D006471 ORTHO05D008157 1.1e-44 183.7 141 68.1
Phvul.007G014500 Phaseolus vulgaris HOM05D006471 ORTHO05D008157 1.1e-44 183.7 139 67.6
Dinv17647 Davidia involucrata HOM05D000200 ORTHO05D001546 2.0e-44 183.0 140 65.0
CsaV3_5G029010 Cucumis sativus L. HOM05D006471 ORTHO05D008157 2.6e-44 182.6 137 65.0
Lalb_Chr06g0163931 Lupinus albus HOM05D006471 ORTHO05D008157 7.4e-44 181.0 139 65.5
Actinidia04343 Actinidia chinensis HOM05D006471 ORTHO05D008157 1.7e-43 179.9 138 66.7
Eucgr.G02586 Eucalyptus grandis HOM05D006471 ORTHO05D008157 2.2e-43 179.5 138 62.3
Lj3A846G60 Lonicera japonica HOM05D006471 ORTHO05D008157 6.3e-43 177.9 138 65.2
Solyc04g008990.3 Solanum lycopersicum HOM05D006471 ORTHO05D008157 6.3e-43 177.9 138 64.5
Sopen04g004170 Solanum pennellii HOM05D006471 ORTHO05D008157 6.3e-43 177.9 138 64.5
Hma1.2p1_0044F.1_g026290 Hydrangea macrophylla HOM05D006471 ORTHO05D008157 1.4e-42 176.8 138 64.5
PGSC0003DMG400011512 Solanum tuberosum HOM05D006471 ORTHO05D008157 1.4e-42 176.8 138 64.5
vmacro16923 Vaccinium macrocarpon HOM05D006471 ORTHO05D008157 2.4e-42 176.0 143 62.2
Aqoxy2G00030 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 5.3e-42 174.9 127 67.7
CSS0032634 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 5.3e-42 174.9 138 64.5
Aqoxy2G01235 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 9.1e-42 174.1 136 64.7
AUR62017731 Chenopodium quinoa HOM05D006471 ORTHO05D008157 9.1e-42 174.1 163 57.1
COL.COLO4_33107 Corchorus olitorius HOM05D006471 ORTHO05D008157 9.1e-42 174.1 140 62.1
Nitab4.5_0004979g0070 Nicotiana tabacum HOM05D006471 ORTHO05D008157 1.6e-41 173.3 138 61.6
CSS0035224 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 2.0e-41 172.9 138 64.5
AUR62032950 Chenopodium quinoa HOM05D006471 ORTHO05D008157 2.6e-41 172.6 138 64.5
Ciclev10031833m.g Citrus clementina HOM05D006471 ORTHO05D008157 2.6e-41 172.6 131 66.4
Cpa.g.sc60.91 Carica papaya HOM05D006471 ORTHO05D008157 3.5e-41 172.2 133 66.2
Sed0003381 Sechium edule HOM05D006471 ORTHO05D008157 3.5e-41 172.2 138 63.0
MSTRG.8091 Avicennia marina HOM05D006471 ORTHO05D008157 7.7e-41 171.0 138 64.5
Nn8g40194 Nelumbo nucifera HOM05D006471 ORTHO05D008157 1.0e-40 170.6 136 63.2
Nitab4.5_0005997g0050 Nicotiana tabacum HOM05D006471 ORTHO05D008157 1.0e-40 170.6 138 62.3
TWI74G1585 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 1.0e-40 170.6 137 65.7
Migut.L00869 Erythranthe guttata HOM05D006471 ORTHO05D008157 1.3e-40 170.2 138 61.6
Atru.chr11.1240 Acer truncatum HOM05D006471 ORTHO05D008157 1.7e-40 169.9 140 62.1
Duzib248G0471 Durio zibethinus HOM05D000200 ORTHO05D001546 1.7e-40 169.9 140 61.4
Duzib132G0448 Durio zibethinus HOM05D006471 ORTHO05D008157 2.2e-40 169.5 140 60.7
Peaxi162Scf00681g00221 Petunia axillaris HOM05D006471 ORTHO05D008157 2.2e-40 169.5 142 60.6
Potri.007G075500 Populus trichocarpa HOM05D006471 ORTHO05D008157 2.2e-40 169.5 142 64.1
CAN.G274.15 Capsicum annuum HOM05D006471 ORTHO05D008157 3.8e-40 168.7 138 60.9
Sabra07G0063800 Salix brachista HOM05D006471 ORTHO05D008157 5.0e-40 168.3 142 62.7
TAR628G0373 Trochodendron aralioides HOM05D006471 ORTHO05D008157 5.0e-40 168.3 136 62.5
Thecc.02G154800 Theobroma cacao HOM05D006471 ORTHO05D008157 8.5e-40 167.5 140 61.4
Thhalv10013886m.g Eutrema salsugineum HOM05D006471 ORTHO05D008157 1.5e-39 166.8 138 62.3
Gohir.D04G148900 Gossypium hirsutum HOM05D006471 ORTHO05D008157 1.9e-39 166.4 145 60.7
Gorai.012G135400 Gossypium raimondii HOM05D006471 ORTHO05D008157 1.9e-39 166.4 145 60.7
Sp6g34600 Schrenkiella parvula HOM05D006471 ORTHO05D008157 2.5e-39 166.0 138 63.0
DCAR_002605 Daucus carota HOM05D000200 ORTHO05D001546 9.4e-39 164.1 138 60.1
Nn2g12513 Nelumbo nucifera HOM05D006471 ORTHO05D008157 1.2e-38 163.7 136 58.1
Gohir.A04G109424 Gossypium hirsutum HOM05D006471 ORTHO05D008157 1.6e-38 163.3 145 60.0
EL10Ac9g22981 Beta vulgaris HOM05D006471 ORTHO05D008157 2.7e-38 162.5 161 55.9
HanXRQChr03g0076951 Helianthus annuus HOM05D006471 ORTHO05D008157 2.7e-38 162.5 138 58.7
BcaB01g05607 Brassica carinata HOM05D006471 ORTHO05D008157 3.6e-38 162.2 138 63.0
C03p04260 Brassica napus HOM05D006471 ORTHO05D008157 3.6e-38 162.2 138 63.0
BolC3t12958H Brassica oleracea HOM05D006471 ORTHO05D008157 3.6e-38 162.2 138 63.0
BcaB01g05611 Brassica carinata HOM05D006471 ORTHO05D008157 6.1e-38 161.4 138 62.3
A03p03780 Brassica napus HOM05D006471 ORTHO05D008157 6.1e-38 161.4 138 63.0
BraA03t09725Z Brassica rapa HOM05D006471 ORTHO05D008157 6.1e-38 161.4 138 63.0
Sc10g0006980 Simmondsia chinensis HOM05D006471 ORTHO05D008157 6.1e-38 161.4 137 59.9
Carub.0006s0724 Capsella rubella HOM05D006471 ORTHO05D008157 8.0e-38 161.0 138 62.3
CARHR204730 Cardamine hirsuta HOM05D006471 ORTHO05D008157 8.0e-38 161.0 138 61.6
AL6G18780 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 1.0e-37 160.6 138 63.0
TWI77G0721 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 1.8e-37 159.8 139 61.9
PGR142G1667 Punica granatum HOM05D006471 ORTHO05D008157 3.0e-37 159.1 138 58.0
SalBow2G1748 Salvia bowleyana HOM05D006471 ORTHO05D008157 5.2e-37 158.3 139 57.6
MSTRG.428 Avicennia marina HOM05D006471 ORTHO05D008157 6.7e-37 157.9 138 58.0
MBI06_g44273_MAGBIO Magnolia biondii HOM05D006471 ORTHO05D008157 1.5e-36 156.8 140 57.9
PSO170G1614 Papaver somniferum HOM05D006471 ORTHO05D008157 1.5e-36 156.8 154 54.5
SGA_v2.0_scaffold92G28263 Striga asiatica HOM05D006471 ORTHO05D008157 2.0e-36 156.4 143 55.9
PSO782G0560 Papaver somniferum HOM05D006471 ORTHO05D008157 5.7e-36 154.8 138 58.0
CDE02G4670 Ceratophyllum demersum HOM05D006471 ORTHO05D008157 7.5e-36 154.5 132 58.3
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 1.3e-35 153.7 138 58.7
AT5G08340 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 1.3e-35 153.7 138 60.9
SGA_v2.0_scaffold42G16129 Striga asiatica HOM05D006471 ORTHO05D008157 1.7e-35 153.3 143 55.9
Ah.16g106450 Amaranthus hybridus HOM05D000154 ORTHO05D000092 3.7e-35 152.1 140 57.1
Lsat_1_v5_gn_0_15460 Lactuca sativa HOM05D006471 ORTHO05D008157 6.3e-35 151.4 141 57.4
Os03g0801700 Oryza sativa ssp. japonica HOM05D006471 ORTHO05D008157 1.4e-34 150.2 128 58.6
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 2.4e-34 149.4 140 55.7
ECA240G3241 Erigeron canadensis HOM05D006471 ORTHO05D008157 7.0e-34 147.9 127 56.7
unitig_749.g13340 Utricularia gibba HOM05D006471 ORTHO05D008157 7.0e-34 147.9 137 52.6
Zm00001eb061200 Zea mays HOM05D006471 ORTHO05D008157 1.2e-33 147.1 140 54.3
THA.LOC104800739 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 2.7e-33 146.0 138 55.8
ATR0665G473 Amborella trichopoda HOM05D006471 ORTHO05D008157 4.5e-33 145.2 138 54.3
THA.LOC104818378 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 5.9e-33 144.8 139 52.5
AT5G23330 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 1.7e-32 143.3 131 53.4
Carub.0006s2111 Capsella rubella HOM05D006471 ORTHO05D008157 2.2e-32 142.9 131 54.2
AL6G34590 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 1.5e-31 140.2 132 53.8
CARHR190210 Cardamine hirsuta HOM05D006471 ORTHO05D008157 1.9e-31 139.8 132 53.0
Oeu006329.1 Olea europaea HOM05D006471 ORTHO05D008157 4.7e-30 135.2 106 63.2
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 4.0e-29 132.1 140 52.1
Cc00_g09970 Coffea canephora HOM05D006471 ORTHO05D008157 1.2e-28 130.6 94 68.1
SEGI_40912 Sequoiadendron giganteum HOM05D006471 ORTHO05D008157 5.7e-28 128.3 140 48.6
HPP92_017784 Vanilla planifolia HOM05D006471 ORTHO05D008157 9.8e-28 127.5 132 48.5
Mapoly0019s0104 Marchantia polymorpha HOM05D006471 ORTHO05D008157 1.6e-25 120.2 130 49.2
Glyma.20G102800 Glycine max HOM05D006471 ORTHO05D008157 6.5e-24 114.8 135 48.9
Pp3c5_28930 Physcomitrium patens HOM05D006471 ORTHO05D008157 1.9e-23 113.2 128 46.1
SMO141G0020 Selaginella moellendorffii HOM05D006471 ORTHO05D008157 8.0e-22 107.8 87 58.6
Pp3c14_5150 Physcomitrium patens HOM05D006471 ORTHO05D008157 2.0e-20 103.2 129 45.0
MD13G1003200 Malus domestica HOM05D006471 ORTHO05D008157 5.6e-15 85.1 54 77.8
Sc06g0004050 Simmondsia chinensis HOM05D006471 ORTHO05D008157 5.6e-15 85.1 74 59.5
MCO07G267 Micromonas commoda HOM05D006471 ORTHO05D008157 2.7e-09 66.2 87 43.7
Cre13.g607600 Chlamydomonas reinhardtii HOM05D006471 ORTHO05D008157 3.6e-06 55.8 169 27.2


User provided reference genes

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