Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 2.5e-245 851.7 437 100.0
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 2.6e-242 841.6 441 98.2
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 8.5e-241 836.6 441 97.3
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 2.7e-239 831.6 441 97.1
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 8.5e-233 810.1 441 94.8
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 1.6e-223 779.2 440 90.5
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 4.0e-222 774.6 439 90.2
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 7.5e-221 770.4 440 89.8
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 3.6e-207 724.9 439 85.0
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 3.4e-205 718.4 440 84.3
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 2.2e-204 715.7 439 83.8
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 2.2e-204 715.7 439 83.8
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 2.8e-204 715.3 441 83.9
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 1.4e-203 713.0 441 83.7
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 1.8e-203 712.6 436 82.1
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 1.8e-203 712.6 436 82.1
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 2.4e-203 712.2 439 84.5
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 2.4e-203 712.2 440 84.3
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 3.1e-203 711.8 440 83.4
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 7.0e-203 710.7 440 83.6
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 5.9e-202 707.6 440 83.0
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 7.8e-202 707.2 439 83.4
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 7.8e-202 707.2 437 84.0
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 1.0e-201 706.8 440 83.2
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 1.7e-201 706.1 440 83.2
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 2.9e-201 705.3 440 83.2
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 5.0e-201 704.5 440 82.7
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 6.6e-201 704.1 439 83.8
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 8.6e-201 703.7 441 82.1
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 1.9e-200 702.6 439 81.5
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 4.3e-200 701.4 443 82.8
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 7.3e-200 700.7 440 83.0
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 7.3e-200 700.7 441 81.9
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 9.5e-200 700.3 442 83.0
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 1.2e-199 699.9 444 82.4
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 2.1e-199 699.1 439 82.5
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 2.8e-199 698.7 442 81.9
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 2.8e-199 698.7 444 82.4
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 4.7e-199 698.0 440 81.4
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 4.7e-199 698.0 444 82.7
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 6.1e-199 697.6 441 81.0
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 1.4e-198 696.4 438 82.6
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.8e-198 696.0 439 82.7
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 1.8e-198 696.0 441 82.8
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 2.3e-198 695.7 439 82.7
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 2.3e-198 695.7 438 82.6
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 4.0e-198 694.9 440 82.0
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 4.0e-198 694.9 436 81.4
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 6.8e-198 694.1 439 82.2
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 8.9e-198 693.7 440 83.0
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 2.0e-197 692.6 442 81.4
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 2.0e-197 692.6 439 81.5
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 3.4e-197 691.8 393 89.1
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 9.8e-197 690.3 441 80.7
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 1.7e-196 689.5 440 82.7
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 2.2e-196 689.1 440 80.2
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 3.7e-196 688.3 443 81.0
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 8.3e-196 687.2 438 82.0
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 8.3e-196 687.2 440 81.6
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 3.2e-195 685.3 404 85.9
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 7.0e-195 684.1 439 80.4
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 7.0e-195 684.1 439 80.0
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 9.2e-195 683.7 440 80.5
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 2.7e-194 682.2 439 81.1
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 2.7e-194 682.2 436 80.7
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 7.8e-194 680.6 440 80.9
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 7.8e-194 680.6 439 81.1
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 1.0e-193 680.2 436 81.2
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 1.3e-193 679.9 437 79.6
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 3.0e-193 678.7 440 78.9
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 6.6e-193 677.6 394 86.5
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 8.6e-193 677.2 394 86.5
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 4.3e-192 674.9 436 80.3
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 5.6e-192 674.5 426 81.9
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 7.3e-192 674.1 436 80.0
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 7.3e-192 674.1 436 80.0
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 1.6e-191 672.9 443 78.3
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 1.6e-191 672.9 441 79.1
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 2.1e-191 672.5 438 80.4
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 2.8e-191 672.2 401 84.3
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 6.2e-191 671.0 439 79.3
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 8.0e-191 670.6 437 80.5
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 1.8e-190 669.5 436 79.4
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 3.1e-190 668.7 437 79.9
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 3.1e-190 668.7 439 80.6
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 2.0e-189 666.0 435 79.8
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 3.4e-189 665.2 439 79.7
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 7.5e-189 664.1 438 78.5
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 1.3e-188 663.3 393 86.0
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 1.7e-188 662.9 437 79.4
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 1.7e-188 662.9 437 79.4
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 4.9e-188 661.4 437 79.4
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 9.2e-187 657.1 414 81.6
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 2.1e-186 656.0 434 78.3
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 2.7e-186 655.6 377 87.8
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 4.6e-186 654.8 409 82.6
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 4.6e-186 654.8 409 82.6
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 7.8e-186 654.1 435 78.2
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 1.3e-185 653.3 435 78.2
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 1.5e-184 649.8 438 77.9
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 1.5e-184 649.8 441 78.0
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 1.9e-184 649.4 433 77.6
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 2.5e-184 649.0 438 77.9
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 3.3e-184 648.7 445 77.8
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 7.3e-184 647.5 436 77.3
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 7.3e-184 647.5 436 77.3
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 3.6e-183 645.2 436 77.8
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 7.5e-181 637.5 378 84.1
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 1.3e-180 636.7 437 76.2
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 2.9e-180 635.6 434 75.1
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 3.2e-179 632.1 383 82.5
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 1.0e-177 627.1 440 75.7
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 2.3e-177 625.9 384 82.0
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.9e-176 622.9 386 83.2
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 1.9e-176 622.9 435 75.4
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 1.2e-175 620.2 394 78.7
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 4.7e-175 618.2 467 70.4
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 1.4e-174 616.7 424 74.5
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 2.4e-171 605.9 381 82.7
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 1.3e-169 600.1 436 73.2
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 3.0e-169 599.0 441 72.8
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 1.3e-164 583.6 365 83.3
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 1.9e-160 569.7 389 78.4
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 1.1e-155 553.9 359 81.3
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 1.6e-151 540.0 376 71.5
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 9.0e-150 534.3 371 71.7
Lj6C840T10 Lonicera japonica HOM05D002468 ORTHO05D005371 2.0e-149 533.1 304 89.5
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 1.3e-148 530.4 371 69.0
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 1.5e-144 516.9 363 69.4
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 3.4e-141 505.8 405 63.2
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 5.8e-141 505.0 370 68.6
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 1.0e-140 504.2 389 66.8
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.3e-140 503.8 378 67.2
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 2.5e-139 499.6 361 70.9
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 4.2e-139 498.8 397 63.2
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 7.1e-139 498.0 378 66.7
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.6e-138 496.9 436 60.3
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 7.9e-138 494.6 385 64.2
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 1.4e-134 483.8 393 61.1
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 3.1e-134 482.6 364 67.0
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 7.2e-131 471.5 400 59.5
SHI04110 Sapria himalayana HOM05D002468 ORTHO05D005371 1.8e-129 466.8 317 77.3
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 2.0e-128 463.4 359 63.8
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 1.6e-114 417.2 365 60.8
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 3.2e-99 366.3 366 56.0
Eucgr.H00650 Eucalyptus grandis HOM05D002468 ORTHO05D005371 1.1e-91 341.3 302 60.9
Lj2g0022028 Lotus japonicus HOM05D002468 ORTHO05D005371 5.0e-84 315.8 215 74.9
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 3.7e-71 273.1 187 78.1
Mapoly0189s0003 Marchantia polymorpha HOM05D002468 ORTHO05D005371 4.7e-66 256.1 328 44.2
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 2.1e-61 240.7 139 88.5
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 1.2e-58 231.5 197 61.9
Glyma.15G205533 Glycine max HOM05D002468 ORTHO05D005371 4.0e-57 226.5 160 71.2
HanXRQChr10g0304361 Helianthus annuus HOM05D002468 ORTHO05D005371 8.4e-55 218.8 123 84.6
CsaV3_1G031170 Cucumis sativus L. HOM05D002468 ORTHO05D005371 2.0e-40 171.0 162 55.6
BcaB01g05316 Brassica carinata HOM05D000877 ORTHO05D012137 1.2e-37 161.8 153 60.8
Glyma.08G007300 Glycine max HOM05D002468 ORTHO05D005371 6.7e-36 156.0 119 67.2
BolC3t13237H Brassica oleracea HOM05D000877 ORTHO05D012137 2.1e-34 151.0 133 60.9
Lalb_Chr10g0091111 Lupinus albus HOM05D002468 ORTHO05D005371 1.1e-30 138.7 79 86.1
SGA_v2.0_scaffold4G02418 Striga asiatica HOM05D002468 ORTHO05D051394 4.3e-27 126.7 98 61.2
CsaV3_1G031160 Cucumis sativus L. HOM05D002468 ORTHO05D005371 7.4e-27 125.9 80 71.2
SEGI_31132 Sequoiadendron giganteum HOM05D002468 ORTHO05D005371 8.7e-20 102.4 128 45.3
SGA_v2.0_scaffold528G52739 Striga asiatica HOM05D002468 ORTHO05D051394 7.4e-19 99.4 56 80.4
Pp3c3_15390 Physcomitrium patens HOM05D002468 ORTHO05D005371 1.1e-14 85.5 94 50.0
vmacro08874 Vaccinium macrocarpon HOM05D002468 ORTHO05D013153 1.5e-08 65.1 35 88.6


User provided reference genes

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