Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G2087 Fragaria x ananassa HOM05D006492 ORTHO05D008432 0.0e+00 1968.4 1017 100.0
FAN07G0933 Fragaria x ananassa HOM05D006492 ORTHO05D008432 0.0e+00 1889.4 1028 95.7
FAN22G2187 Fragaria x ananassa HOM05D006492 ORTHO05D008432 0.0e+00 1871.7 1017 95.9
FAN17G1964 Fragaria x ananassa HOM05D006492 ORTHO05D008432 0.0e+00 1775.0 1043 90.0
RcHm_v2.0_Chr4g0396881 Rosa chinensis HOM05D006492 ORTHO05D008432 0.0e+00 1761.5 1017 90.2
Prupe.1G060300 Prunus persica HOM05D006492 ORTHO05D008432 0.0e+00 1439.9 1022 73.7
MD00G1101100 Malus domestica HOM05D006492 ORTHO05D008432 0.0e+00 1396.3 1023 72.1
FvH4_4g05680 Fragaria vesca HOM05D006492 ORTHO05D008432 0.0e+00 1343.2 708 98.7
Haze_11549 Corylus avellana HOM05D006492 ORTHO05D008432 0.0e+00 1201.4 1017 62.4
QL05p063769 Quercus lobata HOM05D006492 ORTHO05D008432 0.0e+00 1193.7 1064 60.2
Cfa014875 Carpinus fangiana HOM05D006492 ORTHO05D008432 0.0e+00 1182.2 967 63.1
CANSAT78G0108 Cannabis sativa HOM05D006492 ORTHO05D008432 0.0e+00 1154.0 1016 60.4
Dinv38285 Davidia involucrata HOM05D006492 ORTHO05D008432 0.0e+00 1117.1 951 60.7
GSVIVG01029042001 Vitis vinifera HOM05D006492 ORTHO05D008432 0.0e+00 1107.4 1036 57.6
Potri.003G175300 Populus trichocarpa HOM05D006492 ORTHO05D008432 0.0e+00 1105.1 1016 58.1
Potri.001G053000 Populus trichocarpa HOM05D006492 ORTHO05D008432 0.0e+00 1102.4 1019 57.6
Actinidia25080 Actinidia chinensis HOM05D006492 ORTHO05D008432 0.0e+00 1091.3 1016 57.2
TAR365G0557 Trochodendron aralioides HOM05D006492 ORTHO05D008432 0.0e+00 1078.2 1024 56.9
Thecc.04G212600 Theobroma cacao HOM05D006492 ORTHO05D008432 0.0e+00 1077.8 1011 56.6
Manes.15G049000 Manihot esculenta HOM05D006492 ORTHO05D008432 1.4e-311 1073.2 1012 55.9
TAR365G0379 Trochodendron aralioides HOM05D006492 ORTHO05D008432 7.6e-309 1063.9 1024 56.4
vmacro00516 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 2.1e-303 1045.8 1018 55.7
Gorai.006G055600 Gossypium raimondii HOM05D006492 ORTHO05D008432 3.7e-303 1045.0 1015 54.8
Gohir.D09G053008 Gossypium hirsutum HOM05D006492 ORTHO05D008432 4.0e-302 1041.6 1015 54.7
CiPaw.01G204100 Carya illinoinensis HOM05D006492 ORTHO05D008432 1.7e-300 1036.2 913 61.0
TWI09G1643 Tripterygium wilfordii HOM05D006492 ORTHO05D008432 3.5e-298 1028.5 1059 53.3
Sabra01G0037500 Salix brachista HOM05D006492 ORTHO05D008432 1.0e-297 1026.9 1015 55.1
Duzib212G0418 Durio zibethinus HOM05D006492 ORTHO05D008432 8.7e-297 1023.8 984 55.5
COL.COLO4_34090 Corchorus olitorius HOM05D006492 ORTHO05D008432 3.3e-296 1021.9 1020 54.4
Ciclev10004244m.g Citrus clementina HOM05D006492 ORTHO05D008432 2.0e-293 1012.7 979 55.5
MSTRG.24638 Avicennia marina HOM05D006492 ORTHO05D008432 2.8e-287 992.3 1009 52.6
ClCG05G003620 Citrullus lanatus HOM05D006492 ORTHO05D008432 6.5e-284 981.1 1046 52.1
arahy.Tifrunner.gnm1.ann1.TP3X9S Arachis hypogaea HOM05D006492 ORTHO05D008432 6.1e-282 974.5 1015 51.1
CSS0015325 Camellia sinensis var. sinensis HOM05D006492 ORTHO05D008432 3.9e-281 971.8 895 57.7
Glyma.10G192800 Glycine max HOM05D006492 ORTHO05D008432 3.3e-280 968.8 1022 51.7
Nn1g03104 Nelumbo nucifera HOM05D006492 ORTHO05D008432 7.4e-280 967.6 1024 51.1
Glyma.20G197700 Glycine max HOM05D006492 ORTHO05D008432 3.8e-276 955.3 979 52.5
Rhsim09G0049200 Rhododendron simsii HOM05D006492 ORTHO05D008432 1.0e-273 947.2 1079 50.2
Phvul.007G134600 Phaseolus vulgaris HOM05D006492 ORTHO05D008432 2.3e-273 946.0 1014 50.2
Sed0001454 Sechium edule HOM05D006492 ORTHO05D008432 3.7e-271 938.7 1024 50.7
CsaV3_3G011330 Cucumis sativus L. HOM05D006492 ORTHO05D008432 8.2e-271 937.6 1045 50.1
Lj5g0018955 Lotus japonicus HOM05D006492 ORTHO05D008432 5.9e-269 931.4 1004 50.7
Cc03_g07180 Coffea canephora HOM05D006492 ORTHO05D008432 5.0e-268 928.3 1024 49.7
SGA_v2.0_scaffold2G00843 Striga asiatica HOM05D006492 ORTHO05D008432 8.5e-268 927.5 1015 49.5
Cpa.g.sc59.86 Carica papaya HOM05D006492 ORTHO05D008432 1.1e-267 927.2 903 55.1
Sopen09g034300 Solanum pennellii HOM05D006492 ORTHO05D008432 3.3e-264 915.6 1030 48.4
PGR142G2376 Punica granatum HOM05D006492 ORTHO05D008432 4.4e-264 915.2 1011 50.8
ECA233G5226 Erigeron canadensis HOM05D006492 ORTHO05D008432 1.2e-261 907.1 1009 49.4
HanXRQChr07g0185861 Helianthus annuus HOM05D006492 ORTHO05D008432 1.7e-260 903.3 1003 49.2
Nitab4.5_0000493g0030 Nicotiana tabacum HOM05D006492 ORTHO05D008432 6.5e-260 901.4 986 49.6
Migut.N00332 Erythranthe guttata HOM05D006492 ORTHO05D008432 8.0e-258 894.4 978 50.5
TPR.G13408 Trifolium pratense HOM05D006492 ORTHO05D008432 6.7e-257 891.3 987 49.6
Hund24849 Selenicereus undatus HOM05D006492 ORTHO05D008432 4.4e-256 888.6 1021 48.2
Nitab4.5_0012325g0010 Nicotiana tabacum HOM05D006492 ORTHO05D008432 5.7e-256 888.3 1053 47.0
Medtr1g090050 Medicago truncatula HOM05D006492 ORTHO05D008432 2.4e-254 882.9 987 48.8
Sc14g0004710 Simmondsia chinensis HOM05D006492 ORTHO05D008432 2.4e-254 882.9 1016 48.0
EL10Ac3g06781 Beta vulgaris HOM05D006492 ORTHO05D008432 1.9e-251 873.2 1023 46.4
Lalb_Chr21g0312661 Lupinus albus HOM05D006492 ORTHO05D008432 1.0e-249 867.5 912 51.2
VMungo0720G0701 Vigna mungo HOM05D006492 ORTHO05D008432 4.8e-247 858.6 914 50.8
Peaxi162Scf00047g01324 Petunia axillaris HOM05D006492 ORTHO05D008432 1.3e-244 850.5 1002 47.6
MBI10_g16832_MAGBIO Magnolia biondii HOM05D006492 ORTHO05D008432 2.3e-244 849.7 976 48.6
Psat6g170280 Pisum sativum HOM05D006492 ORTHO05D008432 3.8e-244 849.0 1029 47.5
Sp1g03490 Schrenkiella parvula HOM05D006492 ORTHO05D008432 2.8e-242 842.8 1004 45.7
Lju414A5T31 Lonicera japonica HOM05D006492 ORTHO05D008432 6.1e-242 841.6 843 54.0
C08p01350 Brassica napus HOM05D006492 ORTHO05D008432 1.5e-240 837.0 1012 44.7
BolC8t46943H Brassica oleracea HOM05D006492 ORTHO05D008432 1.5e-240 837.0 1012 44.5
AT1G04650 Arabidopsis thaliana HOM05D006492 ORTHO05D008432 1.3e-239 833.9 1016 45.0
AL1G14360 Arabidopsis lyrata HOM05D006492 ORTHO05D008432 4.9e-239 832.0 1008 44.8
CARHR004030 Cardamine hirsuta HOM05D006492 ORTHO05D008432 1.8e-238 830.1 1003 44.9
Carub.0001s0390 Capsella rubella HOM05D006492 ORTHO05D008432 2.7e-237 826.2 1013 44.0
BraA08t35581Z Brassica rapa HOM05D006492 ORTHO05D008432 5.6e-235 818.5 1012 44.3
Thhalv10006668m.g Eutrema salsugineum HOM05D006492 ORTHO05D008432 5.6e-235 818.5 1024 43.4
Eucgr.H00098 Eucalyptus grandis HOM05D006492 ORTHO05D008432 7.3e-235 818.1 909 49.9
A08p36780 Brassica napus HOM05D006492 ORTHO05D008432 1.6e-234 817.0 1018 43.8
THA.LOC104816017 Tarenaya hassleriana HOM05D006492 ORTHO05D008432 1.0e-233 814.3 1018 45.3
Lsat_1_v5_gn_6_62680 Lactuca sativa HOM05D006492 ORTHO05D008432 3.1e-233 812.8 976 47.1
AUR62035934 Chenopodium quinoa HOM05D006492 ORTHO05D008432 4.0e-233 812.4 1029 43.9
Aqoxy2G03837 Aquilegia oxysepala HOM05D006492 ORTHO05D008432 1.2e-232 810.8 1022 45.9
Ah.04g153340 Amaranthus hybridus HOM05D006492 ORTHO05D008432 6.4e-231 805.1 1017 44.3
Ca_10406_v3 Cicer arietinum L. HOM05D006492 ORTHO05D008432 8.6e-228 794.7 930 48.8
SalBow3G2597 Salvia bowleyana HOM05D006492 ORTHO05D008432 4.7e-226 788.9 951 47.0
A10p03080 Brassica napus HOM05D006492 ORTHO05D008432 3.1e-225 786.2 1007 42.8
ATR0787G047 Amborella trichopoda HOM05D006492 ORTHO05D008432 1.2e-224 784.3 1034 43.0
Oeu051651.1 Olea europaea HOM05D006492 ORTHO05D008432 2.6e-224 783.1 779 53.8
PSO017G3024 Papaver somniferum HOM05D006492 ORTHO05D008432 5.4e-222 775.4 1054 45.0
CAN.G1552.5 Capsicum annuum HOM05D006492 ORTHO05D008432 1.2e-221 774.2 893 47.5
DCAR_002278 Daucus carota HOM05D006492 ORTHO05D008432 2.5e-219 766.5 918 46.4
MELO3C006341.2 Cucumis melo HOM05D006492 ORTHO05D008432 1.2e-216 757.7 832 50.1
PSO063G2396 Papaver somniferum HOM05D006492 ORTHO05D008432 2.2e-215 753.4 1043 44.1
unitig_899.g15531 Utricularia gibba HOM05D006492 ORTHO05D008432 1.2e-210 737.6 1013 42.4
Aa31LG1G20220 Aethionema arabicum HOM05D006492 ORTHO05D008432 4.7e-210 735.7 982 41.6
Atru.chr4.1802 Acer truncatum HOM05D006492 ORTHO05D008432 1.6e-205 720.7 667 56.4
BcaC07g36892 Brassica carinata HOM05D006492 ORTHO05D008432 2.6e-200 703.4 917 42.6
Zm00001eb003580 Zea mays HOM05D006492 ORTHO05D008432 5.1e-180 636.0 1035 37.5
vmacro22821 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 5.7e-179 632.5 952 43.1
Solyc09g091370.4 Solanum lycopersicum HOM05D006492 ORTHO05D008432 2.7e-173 613.6 687 48.8
CDE04G0311 Ceratophyllum demersum HOM05D006492 ORTHO05D008432 2.5e-171 607.1 832 41.6
Os03g0144000 Oryza sativa ssp. japonica HOM05D006492 ORTHO05D008432 2.1e-165 587.4 1053 36.2
SHI00019 Sapria himalayana HOM05D006492 ORTHO05D000009 2.2e-154 550.8 908 38.9
SEGI_21616 Sequoiadendron giganteum HOM05D006492 ORTHO05D008432 1.2e-141 508.4 900 34.9
BraA10t42581Z Brassica rapa HOM05D006492 ORTHO05D008432 3.2e-134 483.8 1020 32.1
Pp3c16_18660 Physcomitrium patens HOM05D006492 ORTHO05D008432 2.0e-67 261.9 1069 24.1
HPP92_025559 Vanilla planifolia HOM05D006492 ORTHO05D008432 1.5e-62 245.7 646 30.3
arahy.Tifrunner.gnm1.ann1.LCJ3P1 Arachis hypogaea HOM05D006492 ORTHO05D008432 3.8e-58 231.1 280 42.5
HPP92_025560 Vanilla planifolia HOM05D006492 ORTHO05D008432 1.3e-53 216.1 340 40.6
Atru.chr4.1801 Acer truncatum HOM05D006492 ORTHO05D008432 1.0e-50 206.5 173 59.5
SMO117G0361 Selaginella moellendorffii HOM05D006492 ORTHO05D008432 5.1e-47 194.1 674 26.6
Lju414A5G29 Lonicera japonica HOM05D006492 ORTHO05D008432 1.5e-38 166.0 190 51.1
Mapoly0061s0085 Marchantia polymorpha HOM05D006492 ORTHO05D008432 1.7e-34 152.5 680 24.3
C05p02850 Brassica napus HOM05D006492 ORTHO05D008432 2.8e-21 108.6 136 41.9
AagrBONN_evm.TU.Sc2ySwM_117.2272 Anthoceros agrestis HOM05D006492 ORTHO05D008432 7.0e-20 104.0 412 25.0
CBR_g61877 Chara braunii HOM05D006492 ORTHO05D008432 3.2e-17 95.1 727 22.1
FAN04G1956 Fragaria x ananassa HOM05D006492 ORTHO05D008432 3.6e-16 91.7 50 94.0
C05p02840 Brassica napus HOM05D006492 ORTHO05D008432 1.2e-14 86.7 117 41.0
Nitab4.5_0005468g0040 Nicotiana tabacum HOM05D001280 ORTHO05D008432 2.0e-06 59.3 106 32.1
Gohir.D06G107600 Gossypium hirsutum HOM05D001986 ORTHO05D002283 5.7e-06 57.8 85 36.5
Gohir.D01G124101 Gossypium hirsutum HOM05D021756 ORTHO05D018943 7.5e-06 57.4 72 43.1
PGSC0003DMG400029639 Solanum tuberosum HOM05D006492 ORTHO05D035178 9.8e-06 57.0 44 63.6


User provided reference genes

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