Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G2055 Fragaria x ananassa HOM05D003771 ORTHO05D004396 0.0e+00 1635.5 861 100.0
FvH4_4g00210 Fragaria vesca HOM05D003771 ORTHO05D004396 0.0e+00 1515.4 846 96.3
FAN22G1465 Fragaria x ananassa HOM05D003771 ORTHO05D004396 0.0e+00 1473.4 824 95.9
FAN17G2138 Fragaria x ananassa HOM05D003771 ORTHO05D004396 0.0e+00 1431.8 814 94.5
RcHm_v2.0_Chr4g0384941 Rosa chinensis HOM05D003771 ORTHO05D004396 0.0e+00 1411.0 822 92.8
MD04G1002300 Malus domestica HOM05D003771 ORTHO05D004396 0.0e+00 1350.1 825 88.6
MD15G1427900 Malus domestica HOM05D003771 ORTHO05D004396 0.0e+00 1299.6 808 86.0
CANSAT64G2070 Cannabis sativa HOM05D003771 ORTHO05D004396 0.0e+00 1297.0 812 85.5
CiPaw.15G162500 Carya illinoinensis HOM05D003771 ORTHO05D004396 0.0e+00 1280.0 813 82.9
QL11p007303 Quercus lobata HOM05D003771 ORTHO05D004396 0.0e+00 1265.8 826 81.1
MELO3C009070.2 Cucumis melo HOM05D003771 ORTHO05D004396 0.0e+00 1253.0 815 83.3
Haze_19080 Corylus avellana HOM05D003771 ORTHO05D004396 0.0e+00 1251.9 878 77.8
CsaV3_4G031470 Cucumis sativus L. HOM05D003771 ORTHO05D004396 0.0e+00 1251.1 815 82.9
ClCG04G000570 Citrullus lanatus HOM05D003771 ORTHO05D004396 0.0e+00 1248.8 815 83.2
TWI34G0561 Tripterygium wilfordii HOM05D003771 ORTHO05D004396 0.0e+00 1248.0 812 81.4
COL.COLO4_37655 Corchorus olitorius HOM05D003771 ORTHO05D004396 0.0e+00 1246.1 814 82.6
Lj4g0002190 Lotus japonicus HOM05D003771 ORTHO05D004396 0.0e+00 1245.0 811 82.0
GSVIVG01022289001 Vitis vinifera HOM05D003771 ORTHO05D004396 0.0e+00 1242.3 826 81.1
Dinv12623 Davidia involucrata HOM05D003771 ORTHO05D004396 0.0e+00 1241.5 826 82.1
Thecc.09G205400 Theobroma cacao HOM05D003771 ORTHO05D004396 0.0e+00 1235.3 815 81.8
Glyma.05G220300 Glycine max HOM05D003771 ORTHO05D004396 0.0e+00 1234.6 814 80.5
Phvul.002G302000 Phaseolus vulgaris HOM05D003771 ORTHO05D004396 0.0e+00 1232.6 811 80.4
Gohir.A05G000200 Gossypium hirsutum HOM05D003771 ORTHO05D004396 0.0e+00 1229.9 818 81.4
Gorai.009G000200 Gossypium raimondii HOM05D003771 ORTHO05D004396 0.0e+00 1228.8 818 81.3
Gohir.D05G000400 Gossypium hirsutum HOM05D003771 ORTHO05D004396 0.0e+00 1227.2 818 81.2
VMungo0251G3699 Vigna mungo HOM05D003771 ORTHO05D004396 0.0e+00 1226.8 811 81.0
Actinidia02465 Actinidia chinensis HOM05D003771 ORTHO05D004396 0.0e+00 1226.5 826 79.9
Sed0018603 Sechium edule HOM05D003771 ORTHO05D004396 0.0e+00 1225.7 815 81.5
CSS0004980 Camellia sinensis var. sinensis HOM05D003771 ORTHO05D004396 0.0e+00 1224.5 827 79.9
Atru.chr12.1314 Acer truncatum HOM05D003771 ORTHO05D004396 0.0e+00 1223.0 840 79.3
Glyma.08G026700 Glycine max HOM05D003771 ORTHO05D004396 0.0e+00 1222.6 811 81.0
Prupe.7G042600 Prunus persica HOM05D003771 ORTHO05D004396 0.0e+00 1221.8 821 82.1
Duzib168G1435 Durio zibethinus HOM05D003771 ORTHO05D004396 0.0e+00 1219.5 818 80.8
Ca_17443_v3 Cicer arietinum L. HOM05D003771 ORTHO05D004396 0.0e+00 1218.8 811 81.8
TPR.G25458 Trifolium pratense HOM05D003771 ORTHO05D004396 0.0e+00 1215.7 811 80.8
PGR044G2258 Punica granatum HOM05D003771 ORTHO05D004396 0.0e+00 1212.2 828 78.5
DCAR_020453 Daucus carota HOM05D003771 ORTHO05D004396 0.0e+00 1211.4 824 79.7
Ciclev10007279m.g Citrus clementina HOM05D003771 ORTHO05D004396 0.0e+00 1211.1 824 80.3
Medtr8g100105 Medicago truncatula HOM05D003771 ORTHO05D004396 0.0e+00 1209.1 811 79.8
Eucgr.E04317 Eucalyptus grandis HOM05D003771 ORTHO05D004396 0.0e+00 1208.7 828 79.5
Cc06_g23760 Coffea canephora HOM05D003771 ORTHO05D004396 0.0e+00 1208.0 823 79.8
Nitab4.5_0000019g0010 Nicotiana tabacum HOM05D003771 ORTHO05D004396 0.0e+00 1208.0 823 80.0
Nn3g19428 Nelumbo nucifera HOM05D003771 ORTHO05D004396 0.0e+00 1207.2 825 78.4
Migut.L01925 Erythranthe guttata HOM05D003771 ORTHO05D004396 0.0e+00 1206.8 823 79.0
TAR383G0820 Trochodendron aralioides HOM05D003771 ORTHO05D004396 0.0e+00 1203.7 842 77.8
Lalb_Chr05g0223831 Lupinus albus HOM05D003771 ORTHO05D004396 0.0e+00 1203.3 812 79.8
Oeu008632.1 Olea europaea HOM05D003771 ORTHO05D004396 0.0e+00 1201.0 818 79.5
Psat7g020760 Pisum sativum HOM05D003771 ORTHO05D004396 0.0e+00 1201.0 829 79.3
Manes.02G223900 Manihot esculenta HOM05D003771 ORTHO05D004396 0.0e+00 1199.5 833 79.2
THA.LOC104808936 Tarenaya hassleriana HOM05D003771 ORTHO05D004396 0.0e+00 1198.3 830 79.9
CARHR104050 Cardamine hirsuta HOM05D003771 ORTHO05D004396 0.0e+00 1197.6 817 80.5
Nn1g00173 Nelumbo nucifera HOM05D003771 ORTHO05D004396 0.0e+00 1197.6 826 79.8
PSO063G0153 Papaver somniferum HOM05D003771 ORTHO05D004396 0.0e+00 1196.0 827 78.6
Carub.0013s0005 Capsella rubella HOM05D003771 ORTHO05D004396 0.0e+00 1195.6 820 80.0
AL3G44140 Arabidopsis lyrata HOM05D003771 ORTHO05D004396 0.0e+00 1194.5 817 80.2
SGA_v2.0_scaffold21G09599 Striga asiatica HOM05D003771 ORTHO05D004396 0.0e+00 1193.7 823 78.4
Thhalv10012482m.g Eutrema salsugineum HOM05D003771 ORTHO05D004396 0.0e+00 1192.2 817 80.2
BcaB01g04159 Brassica carinata HOM05D003771 ORTHO05D004396 0.0e+00 1191.8 813 78.1
Sp6g13880 Schrenkiella parvula HOM05D003771 ORTHO05D004396 0.0e+00 1189.1 820 79.3
BcaB08g35516 Brassica carinata HOM05D003771 ORTHO05D004396 0.0e+00 1188.7 813 79.5
BraA03t10897Z Brassica rapa HOM05D003771 ORTHO05D004396 0.0e+00 1188.7 817 79.3
SalBow5G2520 Salvia bowleyana HOM05D003771 ORTHO05D004396 0.0e+00 1188.7 829 77.7
A03p16060 Brassica napus HOM05D003771 ORTHO05D004396 0.0e+00 1188.3 817 79.3
PSO782G3876 Papaver somniferum HOM05D003771 ORTHO05D004396 0.0e+00 1187.9 827 78.2
AT2G07360 Arabidopsis thaliana HOM05D003771 ORTHO05D004396 0.0e+00 1187.6 822 79.6
BcaC01g06134 Brassica carinata HOM05D003771 ORTHO05D004396 0.0e+00 1187.2 818 79.0
Potri.018G149400 Populus trichocarpa HOM05D003771 ORTHO05D004396 0.0e+00 1187.2 835 77.7
Sc06g0002410 Simmondsia chinensis HOM05D003771 ORTHO05D004396 0.0e+00 1186.4 827 78.8
BcaC04g20648 Brassica carinata HOM05D003771 ORTHO05D004396 0.0e+00 1186.0 818 79.3
Aqoxy3G04250 Aquilegia oxysepala HOM05D003771 ORTHO05D004396 0.0e+00 1183.7 830 78.1
Sopen05g020060 Solanum pennellii HOM05D003771 ORTHO05D004396 0.0e+00 1183.3 823 78.5
BolC3t14282H Brassica oleracea HOM05D003771 ORTHO05D004396 0.0e+00 1181.8 830 78.2
C03p18900 Brassica napus HOM05D003771 ORTHO05D004396 0.0e+00 1180.6 817 78.9
Ah.04g162600 Amaranthus hybridus HOM05D003771 ORTHO05D004396 0.0e+00 1175.6 852 75.4
CAN.G587.52 Capsicum annuum HOM05D003771 ORTHO05D004396 0.0e+00 1174.1 761 81.1
Lj5A798G49 Lonicera japonica HOM05D003771 ORTHO05D004396 0.0e+00 1172.9 766 80.9
MSTRG.26513 Avicennia marina HOM05D003771 ORTHO05D004396 0.0e+00 1168.3 827 77.3
Cpa.g.sc91.64 Carica papaya HOM05D003771 ORTHO05D004396 0.0e+00 1165.6 829 77.6
Aa31sc328G10 Aethionema arabicum HOM05D003771 ORTHO05D004396 0.0e+00 1164.8 861 75.5
Sabra18G0126200 Salix brachista HOM05D003771 ORTHO05D004396 0.0e+00 1160.6 903 71.3
Lju50C19G3 Lonicera japonica HOM05D003771 ORTHO05D004396 0.0e+00 1158.3 776 78.5
arahy.Tifrunner.gnm1.ann1.TH49EC Arachis hypogaea HOM05D003771 ORTHO05D004396 0.0e+00 1144.0 841 74.3
ATR0626G390 Amborella trichopoda HOM05D003771 ORTHO05D004396 0.0e+00 1142.9 843 73.5
arahy.Tifrunner.gnm1.ann1.XKPK2Z Arachis hypogaea HOM05D003771 ORTHO05D004396 0.0e+00 1139.0 830 74.8
AUR62034148 Chenopodium quinoa HOM05D003771 ORTHO05D004396 0.0e+00 1137.5 830 75.3
HanXRQChr02g0040541 Helianthus annuus HOM05D003771 ORTHO05D004396 0.0e+00 1134.0 816 76.1
AUR62014286 Chenopodium quinoa HOM05D003771 ORTHO05D004396 0.0e+00 1127.5 830 75.4
Lsat_1_v5_gn_1_6680 Lactuca sativa HOM05D003771 ORTHO05D004396 0.0e+00 1123.6 814 75.2
ECA233G1083 Erigeron canadensis HOM05D003771 ORTHO05D004396 0.0e+00 1121.3 815 75.3
Zm00001eb011800 Zea mays HOM05D003771 ORTHO05D004396 0.0e+00 1106.3 818 72.7
A10p09550 Brassica napus HOM05D003771 ORTHO05D004396 0.0e+00 1099.0 815 74.8
CDE07G1201 Ceratophyllum demersum HOM05D003771 ORTHO05D004396 0.0e+00 1088.2 825 72.8
SEGI_40037 Sequoiadendron giganteum HOM05D003771 ORTHO05D004396 2.1e-307 1058.9 841 69.4
Os03g0265700 Oryza sativa ssp. japonica HOM05D003771 ORTHO05D004396 2.0e-286 989.2 668 76.2
Hund03218 Selenicereus undatus HOM05D003771 ORTHO05D004396 4.2e-260 901.7 608 78.3
Rhsim01G0106700 Rhododendron simsii HOM05D003771 ORTHO05D004396 2.1e-259 899.4 674 73.7
Mapoly0015s0202 Marchantia polymorpha HOM05D003771 ORTHO05D004396 9.7e-257 890.6 830 59.8
Pp3c15_18470 Physcomitrium patens HOM05D003771 ORTHO05D004396 2.7e-254 882.5 841 58.9
AagrBONN_evm.TU.Sc2ySwM_228.3008 Anthoceros agrestis HOM05D003771 ORTHO05D004396 3.0e-250 869.0 832 57.8
CSS0043776 Camellia sinensis var. sinensis HOM05D003771 ORTHO05D004396 1.7e-237 826.6 687 66.5
SMO367G0435 Selaginella moellendorffii HOM05D003771 ORTHO05D004396 1.7e-221 773.5 702 60.7
HanXRQChr05g0138991 Helianthus annuus HOM05D003771 ORTHO05D004396 3.0e-221 772.7 626 67.3
HPP92_018040 Vanilla planifolia HOM05D003771 ORTHO05D004396 2.8e-219 766.1 495 80.6
MBI14_g32940_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D004396 2.1e-211 740.0 577 70.5
EL10Ac4g08749 Beta vulgaris HOM05D003771 ORTHO05D004396 1.4e-210 737.3 473 81.8
Peaxi162Scf00322g01517 Petunia axillaris HOM05D003771 ORTHO05D004396 1.8e-202 710.3 438 84.5
Hund19352 Selenicereus undatus HOM05D003771 ORTHO05D004396 2.3e-197 693.3 457 80.7
BraA10t43030Z Brassica rapa HOM05D003771 ORTHO05D004396 2.2e-184 650.2 497 74.6
BolC9t56986H Brassica oleracea HOM05D003771 ORTHO05D004396 3.9e-181 639.4 521 71.8
MD07G1055500 Malus domestica HOM05D003771 ORTHO05D004396 2.4e-178 630.2 479 73.5
C09p41060 Brassica napus HOM05D003771 ORTHO05D004396 5.1e-165 585.9 455 74.3
C09p41070 Brassica napus HOM05D003771 ORTHO05D004396 5.5e-151 539.3 316 87.0
vmacro20748 Vaccinium macrocarpon HOM05D003771 ORTHO05D004396 4.1e-146 523.1 321 85.4
AagrBONN_evm.TU.Sc2ySwM_369.331 Anthoceros agrestis HOM05D003771 ORTHO05D004396 6.8e-141 505.8 451 59.6
Aqoxy3G02692 Aquilegia oxysepala HOM05D003771 ORTHO05D004396 3.4e-140 503.4 444 65.1
Lsat_1_v5_gn_8_69981 Lactuca sativa HOM05D003771 ORTHO05D004396 2.1e-134 484.2 362 73.2
unitig_899.g15422 Utricularia gibba HOM05D003771 ORTHO05D004396 2.5e-119 434.1 252 87.7
Aqoxy3G02691 Aquilegia oxysepala HOM05D003771 ORTHO05D004396 2.7e-105 387.5 206 94.2
HPP92_018039 Vanilla planifolia HOM05D003771 ORTHO05D004396 1.4e-101 375.2 353 62.0
vmacro20746 Vaccinium macrocarpon HOM05D003771 ORTHO05D004396 8.9e-101 372.5 303 72.9
Nitab4.5_0006114g0020 Nicotiana tabacum HOM05D003771 ORTHO05D004396 2.5e-95 354.4 296 71.6
AagrBONN_evm.TU.Sc2ySwM_228.2996 Anthoceros agrestis HOM05D003771 ORTHO05D004396 8.1e-86 322.8 346 54.0
AagrBONN_evm.TU.Sc2ySwM_369.330 Anthoceros agrestis HOM05D003771 ORTHO05D004396 8.1e-86 322.8 346 54.0
AagrBONN_evm.TU.Sc2ySwM_228.2998 Anthoceros agrestis HOM05D003771 ORTHO05D004396 8.7e-80 302.8 191 78.0
unitig_899.g15421 Utricularia gibba HOM05D003771 ORTHO05D004396 1.5e-76 292.0 230 67.0
Nitab4.5_0006114g0010 Nicotiana tabacum HOM05D003771 ORTHO05D004396 4.9e-75 287.0 153 93.5
vmacro20747 Vaccinium macrocarpon HOM05D003771 ORTHO05D004396 3.3e-71 274.2 320 52.8
unitig_899.g15420 Utricularia gibba HOM05D003771 ORTHO05D004396 4.8e-70 270.4 225 67.6
Solyc05g025750.3 Solanum lycopersicum HOM05D003771 ORTHO05D004396 3.8e-67 260.8 224 71.9
Peaxi162Scf00322g01516 Petunia axillaris HOM05D003771 ORTHO05D004396 7.9e-65 253.1 222 69.4
RcHm_v2.0_Chr4g0384821 Rosa chinensis HOM05D003771 ORTHO05D004396 7.6e-60 236.5 124 95.2
HanXRQChr05g0138111 Helianthus annuus HOM05D003771 ORTHO05D004396 5.1e-56 223.8 123 89.4
Lsat_1_v5_gn_8_70001 Lactuca sativa HOM05D003771 ORTHO05D004396 1.5e-52 212.2 220 56.4
Oeu036958.1 Olea europaea HOM05D003771 ORTHO05D004396 2.6e-52 211.5 147 71.4
Psat6g005640 Pisum sativum HOM05D003771 ORTHO05D004396 2.0e-44 185.3 136 70.6
CBR_g10825 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-43 181.8 167 56.3
AagrBONN_evm.TU.Sc2ySwM_228.2997 Anthoceros agrestis HOM05D003771 ORTHO05D004396 2.5e-42 178.3 163 55.2
COL.COLO4_38524 Corchorus olitorius HOM05D003771 ORTHO05D004396 1.6e-41 175.6 142 67.6
TAR633G1498 Trochodendron aralioides HOM05D003771 ORTHO05D004396 1.8e-37 162.2 151 67.5
CBR_g10827 Chara braunii HOM05D003771 ORTHO05D004396 1.2e-33 149.4 470 28.9
Psat0s1568g0040 Pisum sativum HOM05D003771 ORTHO05D004396 2.1e-33 148.7 90 83.3
SHI04092 Sapria himalayana HOM05D003771 ORTHO05D004396 6.1e-33 147.1 158 58.9
Oeu036959.1 Olea europaea HOM05D003771 ORTHO05D004396 8.8e-32 143.3 141 68.1
Zm00001eb307240 Zea mays HOM05D003771 ORTHO05D004396 8.8e-32 143.3 74 94.6
Zm00001eb154330 Zea mays HOM05D003771 ORTHO05D004396 4.4e-31 141.0 74 93.2
Lsat_1_v5_gn_5_155680 Lactuca sativa HOM05D003771 ORTHO05D004396 2.7e-28 131.7 123 60.2
VMungo0331G1237 Vigna mungo HOM05D003771 ORTHO05D004396 7.2e-26 123.6 74 78.4
VMungo1209G0002 Vigna mungo HOM05D003771 ORTHO05D004396 3.4e-23 114.8 91 65.9
VMungo0331G1533 Vigna mungo HOM05D003771 ORTHO05D004396 2.2e-19 102.1 129 46.5
MBI18_g07590_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D015058 1.1e-18 99.8 78 69.2
Lsat_1_v5_gn_4_142760 Lactuca sativa HOM05D003771 ORTHO05D012343 9.5e-18 96.7 143 45.5
Lsat_1_v5_gn_7_78841 Lactuca sativa HOM05D003771 ORTHO05D004396 8.8e-16 90.1 169 40.8
Psat3g071280 Pisum sativum HOM05D000062 ORTHO05D004396 6.3e-14 84.0 79 59.5
MBI05_g48085_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D004396 1.1e-13 83.2 65 66.2
Psat0ss6263g0280 Pisum sativum HOM05D041104 ORTHO05D004396 1.4e-13 82.8 79 59.5
Psat5g077000 Pisum sativum HOM05D000062 ORTHO05D004396 3.1e-13 81.6 117 44.4
MD07G1055400 Malus domestica HOM05D003771 ORTHO05D004396 1.6e-12 79.3 41 97.6
CDE06G2293 Ceratophyllum demersum HOM05D003771 ORTHO05D004396 1.5e-10 72.8 123 43.1
MD07G1055300 Malus domestica HOM05D003771 ORTHO05D004396 2.8e-09 68.6 36 91.7
MBI14_g31102_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D012924 4.7e-09 67.8 152 36.8
Psat0s9825g0040 Pisum sativum HOM05D011383 ORTHO05D004396 1.5e-07 62.8 59 57.6
MBI05_g23486_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D015058 3.7e-06 58.2 43 69.8


User provided reference genes

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