Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G2022 Fragaria x ananassa HOM05D001137 ORTHO05D005066 2.7e-159 565.5 328 100.0
FvH4_4g17510 Fragaria vesca HOM05D001137 ORTHO05D005066 1.5e-157 559.7 332 98.8
FAN07G1649 Fragaria x ananassa HOM05D001137 ORTHO05D005066 2.0e-154 549.3 332 97.3
FAN17G0634 Fragaria x ananassa HOM05D001137 ORTHO05D005066 2.9e-153 545.4 332 96.4
RcHm_v2.0_Chr4g0421431 Rosa chinensis HOM05D001137 ORTHO05D005066 2.4e-147 525.8 333 91.0
Prupe.1G140300 Prunus persica HOM05D001137 ORTHO05D005066 2.6e-125 452.6 337 82.5
MD16G1173400 Malus domestica HOM05D001137 ORTHO05D005066 5.0e-121 438.3 337 79.8
CANSAT78G1005 Cannabis sativa HOM05D001137 ORTHO05D005066 5.1e-105 385.2 336 72.9
Ciclev10004439m.g Citrus clementina HOM05D001137 ORTHO05D005066 1.4e-102 377.1 337 72.4
GSVIVG01017784001 Vitis vinifera HOM05D001137 ORTHO05D005066 1.1e-99 367.5 336 72.0
QL06p007709 Quercus lobata HOM05D001137 ORTHO05D005066 1.2e-98 364.0 336 71.4
CiPaw.01G151600 Carya illinoinensis HOM05D001137 ORTHO05D005066 1.5e-93 347.1 336 68.5
Hma1.2p1_0698F.1_g205450 Hydrangea macrophylla HOM05D001137 ORTHO05D005066 7.9e-90 334.7 337 65.3
Thecc.04G279600 Theobroma cacao HOM05D001137 ORTHO05D005066 7.9e-90 334.7 336 67.0
Lalb_Chr18g0055631 Lupinus albus HOM05D001137 ORTHO05D005066 1.7e-89 333.6 339 65.8
Manes.03G192200 Manihot esculenta HOM05D001137 ORTHO05D005066 1.7e-89 333.6 336 68.8
Gohir.A10G161500 Gossypium hirsutum HOM05D001137 ORTHO05D005066 3.9e-89 332.4 336 67.3
COL.COLO4_13912 Corchorus olitorius HOM05D001137 ORTHO05D005066 2.5e-88 329.7 333 66.1
Potri.008G214900 Populus trichocarpa HOM05D001137 ORTHO05D005066 3.3e-88 329.3 336 66.4
Sabra08G0155800 Salix brachista HOM05D001137 ORTHO05D005066 1.3e-87 327.4 335 65.7
Potri.010G022000 Populus trichocarpa HOM05D001137 ORTHO05D005066 2.1e-87 326.6 336 64.9
Gohir.D10G168000 Gossypium hirsutum HOM05D001137 ORTHO05D005066 2.4e-86 323.2 336 66.4
Gorai.011G187500 Gossypium raimondii HOM05D001137 ORTHO05D005066 4.0e-86 322.4 336 66.4
Actinidia01942 Actinidia chinensis HOM05D001137 ORTHO05D005066 2.0e-85 320.1 336 65.2
Lj3C813G4 Lonicera japonica HOM05D001137 ORTHO05D005066 4.9e-84 315.5 333 64.6
arahy.Tifrunner.gnm1.ann1.HMK9CN Arachis hypogaea HOM05D001137 ORTHO05D005066 1.1e-83 314.3 336 65.2
Gohir.A09G240400 Gossypium hirsutum HOM05D001137 ORTHO05D005066 1.9e-83 313.5 336 64.6
Gohir.D09G241100 Gossypium hirsutum HOM05D001137 ORTHO05D005066 1.9e-83 313.5 336 64.3
Gorai.006G264600 Gossypium raimondii HOM05D001137 ORTHO05D005066 2.4e-83 313.2 339 63.4
Lj6g0014210 Lotus japonicus HOM05D001137 ORTHO05D005066 4.2e-83 312.4 336 63.4
Duzib151G0891 Durio zibethinus HOM05D001137 ORTHO05D005066 9.3e-83 311.2 336 64.6
arahy.Tifrunner.gnm1.ann1.GKEN9S Arachis hypogaea HOM05D001137 ORTHO05D005066 1.6e-82 310.5 337 65.3
Rhsim04G0218100 Rhododendron simsii HOM05D001137 ORTHO05D005066 1.6e-82 310.5 338 60.4
Duzib212G0615 Durio zibethinus HOM05D001137 ORTHO05D005066 1.0e-81 307.8 336 65.2
Nn3g21353 Nelumbo nucifera HOM05D001137 ORTHO05D005066 1.0e-81 307.8 333 63.7
TWI73G0988 Tripterygium wilfordii HOM05D001137 ORTHO05D005066 1.0e-81 307.8 336 62.8
Actinidia40240 Actinidia chinensis HOM05D001137 ORTHO05D005066 1.8e-81 307.0 337 64.7
Manes.15G015400 Manihot esculenta HOM05D001137 ORTHO05D005066 3.9e-81 305.8 336 63.1
vmacro22477 Vaccinium macrocarpon HOM05D001137 ORTHO05D005066 3.9e-81 305.8 339 56.6
CAN.G580.11 Capsicum annuum HOM05D001137 ORTHO05D005066 1.1e-80 304.3 334 64.1
TAR365G1163 Trochodendron aralioides HOM05D001137 ORTHO05D005066 1.5e-80 303.9 337 61.4
Lj4g0021111 Lotus japonicus HOM05D001137 ORTHO05D005066 4.3e-80 302.4 334 63.8
PGR004G0465 Punica granatum HOM05D001137 ORTHO05D005066 7.4e-80 301.6 338 61.8
MBI18_g01977_MAGBIO Magnolia biondii HOM05D001137 ORTHO05D005066 2.1e-79 300.1 349 60.7
Atru.chr4.2781 Acer truncatum HOM05D001137 ORTHO05D005066 2.8e-79 299.7 316 65.8
Cc03_g02170 Coffea canephora HOM05D001137 ORTHO05D005066 3.7e-79 299.3 337 62.9
Medtr4g119100 Medicago truncatula HOM05D001137 ORTHO05D005066 8.1e-79 298.1 336 65.5
Phvul.006G162800 Phaseolus vulgaris HOM05D001137 ORTHO05D005066 1.4e-78 297.4 336 63.7
Nn4g25962 Nelumbo nucifera HOM05D001137 ORTHO05D005066 3.1e-78 296.2 340 54.1
Glyma.13G216400 Glycine max HOM05D001137 ORTHO05D005066 1.7e-76 290.4 343 61.5
MELO3C006622.2 Cucumis melo HOM05D001137 ORTHO05D005066 4.9e-76 288.9 330 60.6
Peaxi162Scf00386g00616 Petunia axillaris HOM05D001137 ORTHO05D005066 1.9e-75 287.0 334 60.8
CsaV3_3G014290 Cucumis sativus L. HOM05D001137 ORTHO05D005066 2.5e-75 286.6 335 59.7
PGSC0003DMG401022673 Solanum tuberosum HOM05D001137 ORTHO05D005066 4.2e-75 285.8 321 55.1
TPR.G14624 Trifolium pratense HOM05D001137 ORTHO05D005066 7.1e-75 285.0 336 64.0
VMungo0375G0001 Vigna mungo HOM05D001137 ORTHO05D005066 4.6e-74 282.3 336 62.2
Solyc01g067480.4 Solanum lycopersicum HOM05D001137 ORTHO05D005066 1.3e-73 280.8 327 55.4
Sopen01g029390 Solanum pennellii HOM05D001137 ORTHO05D005066 1.3e-73 280.8 332 55.4
Ca_21530_v3 Cicer arietinum L. HOM05D001137 ORTHO05D005066 2.3e-73 280.0 336 62.5
Ca_21539_v3 Cicer arietinum L. HOM05D001137 ORTHO05D005066 2.3e-73 280.0 336 62.5
EL10Ac7g16750 Beta vulgaris HOM05D001137 ORTHO05D005066 3.0e-73 279.6 335 57.9
AUR62031245 Chenopodium quinoa HOM05D001137 ORTHO05D005066 3.0e-73 279.6 335 57.3
THA.LOC104802721 Tarenaya hassleriana HOM05D001137 ORTHO05D005066 3.0e-73 279.6 335 58.2
Ah.08g211130 Amaranthus hybridus HOM05D001137 ORTHO05D005066 1.1e-72 277.7 336 60.1
SalBow2G1809 Salvia bowleyana HOM05D001137 ORTHO05D005066 1.5e-72 277.3 341 51.9
Sc13g0003550 Simmondsia chinensis HOM05D001137 ORTHO05D005066 4.3e-72 275.8 331 60.7
Nitab4.5_0000829g0190 Nicotiana tabacum HOM05D001137 ORTHO05D005066 7.4e-72 275.0 333 58.3
Sed0010501 Sechium edule HOM05D001137 ORTHO05D005066 9.6e-72 274.6 332 58.1
Phvul.003G102100 Phaseolus vulgaris HOM05D001137 ORTHO05D005066 2.8e-71 273.1 335 61.5
VMungo1215G0971 Vigna mungo HOM05D001137 ORTHO05D005066 6.3e-71 271.9 335 61.2
Glyma.17G024000 Glycine max HOM05D001137 ORTHO05D005066 1.4e-70 270.8 335 61.2
Nitab4.5_0000644g0060 Nicotiana tabacum HOM05D001137 ORTHO05D005066 3.1e-70 269.6 358 54.2
CARHR194430 Cardamine hirsuta HOM05D001137 ORTHO05D005066 5.3e-70 268.9 343 51.9
MSTRG.3938 Avicennia marina HOM05D001137 ORTHO05D005066 9.0e-70 268.1 335 60.9
Carub.0006s1687 Capsella rubella HOM05D001137 ORTHO05D005066 2.6e-69 266.5 339 55.8
Medtr2g019860 Medicago truncatula HOM05D001137 ORTHO05D005066 2.6e-69 266.5 335 57.0
Sp6g25740 Schrenkiella parvula HOM05D001137 ORTHO05D005066 3.4e-69 266.2 338 51.8
TPR.G1509 Trifolium pratense HOM05D001137 ORTHO05D005066 4.5e-69 265.8 340 53.5
DCAR_030541 Daucus carota HOM05D001137 ORTHO05D005066 2.2e-68 263.5 336 59.5
AT5G18590 Arabidopsis thaliana HOM05D001137 ORTHO05D005066 2.9e-68 263.1 342 55.0
AL6G29860 Arabidopsis lyrata HOM05D001137 ORTHO05D005066 5.0e-68 262.3 338 55.3
BcaB08g36660 Brassica carinata HOM05D001137 ORTHO05D005066 6.5e-68 261.9 341 55.1
AUR62027452 Chenopodium quinoa HOM05D001137 ORTHO05D005066 8.5e-68 261.5 335 56.4
ECA248G1543 Erigeron canadensis HOM05D001137 ORTHO05D005066 8.5e-68 261.5 332 59.3
Migut.G00190 Erythranthe guttata HOM05D001137 ORTHO05D005066 3.2e-67 259.6 335 56.7
Cpa.g.sc1214.1 Carica papaya HOM05D001137 ORTHO05D005066 5.5e-67 258.8 294 62.6
BraA10t44162Z Brassica rapa HOM05D001137 ORTHO05D005066 9.3e-67 258.1 339 55.5
A10p20970 Brassica napus HOM05D001137 ORTHO05D005066 2.1e-66 256.9 339 55.5
Hund24915 Selenicereus undatus HOM05D001137 ORTHO05D005066 2.7e-66 256.5 336 58.0
Thhalv10012828m.g Eutrema salsugineum HOM05D001137 ORTHO05D005066 7.9e-66 255.0 338 50.9
Psat1g187920 Pisum sativum HOM05D001137 ORTHO05D005066 1.0e-65 254.6 337 55.8
SGA_v2.0_scaffold86G26927 Striga asiatica HOM05D001137 ORTHO05D005066 1.0e-65 254.6 334 56.9
Sed0020296 Sechium edule HOM05D001137 ORTHO05D005066 1.8e-65 253.8 332 55.1
Lsat_1_v5_gn_5_157341 Lactuca sativa HOM05D001137 ORTHO05D005066 8.7e-65 251.5 332 52.1
TWI09G0222 Tripterygium wilfordii HOM05D001137 ORTHO05D005066 3.3e-64 249.6 313 57.5
arahy.Tifrunner.gnm1.ann1.SGL9NF Arachis hypogaea HOM05D001137 ORTHO05D005066 9.7e-64 248.1 332 58.4
Glyma.07G250400 Glycine max HOM05D001137 ORTHO05D005066 1.3e-63 247.7 343 57.7
HanXRQChr13g0388221 Helianthus annuus HOM05D001137 ORTHO05D005066 1.6e-63 247.3 331 53.8
arahy.Tifrunner.gnm1.ann1.S97PWN Arachis hypogaea HOM05D001137 ORTHO05D005066 2.8e-63 246.5 332 58.4
BcaC04g18664 Brassica carinata HOM05D001137 ORTHO05D005066 8.2e-63 245.0 340 53.8
C09p57890 Brassica napus HOM05D001137 ORTHO05D005066 8.2e-63 245.0 340 53.8
BolC9t58657H Brassica oleracea HOM05D001137 ORTHO05D005066 8.2e-63 245.0 340 53.8
ClCG05G005910 Citrullus lanatus HOM05D001137 ORTHO05D005066 3.4e-61 239.6 315 55.6
ATR0706G140 Amborella trichopoda HOM05D001137 ORTHO05D005066 2.9e-60 236.5 349 54.7
PSO210G1694 Papaver somniferum HOM05D001137 ORTHO05D005066 3.2e-59 233.0 301 57.5
CSS0024935 Camellia sinensis var. sinensis HOM05D001137 ORTHO05D005066 2.7e-58 229.9 260 55.8
PSO170G4147 Papaver somniferum HOM05D001137 ORTHO05D005066 1.4e-57 227.6 305 56.4
CDE11G0818 Ceratophyllum demersum HOM05D001137 ORTHO05D005066 2.3e-57 226.9 304 57.9
HanXRQChr01g0008171 Helianthus annuus HOM05D001137 ORTHO05D005066 2.3e-57 226.9 331 55.6
FAN12G2086 Fragaria x ananassa HOM05D001137 ORTHO05D005066 1.3e-55 221.1 117 100.0
MD13G1171900 Malus domestica HOM05D001137 ORTHO05D005066 2.8e-55 219.9 328 47.0
Ca_21540_v3 Cicer arietinum L. HOM05D001137 ORTHO05D005066 1.1e-54 218.0 332 47.6
Glyma.15G096200 Glycine max HOM05D001137 ORTHO05D005066 1.8e-54 217.2 296 59.1
HPP92_015154 Vanilla planifolia HOM05D001137 ORTHO05D005066 6.9e-54 215.3 339 52.8
Aa31LG11G11030 Aethionema arabicum HOM05D001137 ORTHO05D005066 2.0e-53 213.8 339 51.0
CSS0028405 Camellia sinensis var. sinensis HOM05D001137 ORTHO05D005066 4.5e-53 212.6 220 56.8
Ca_21531_v3 Cicer arietinum L. HOM05D001137 ORTHO05D005066 1.7e-52 210.7 316 47.5
Aqoxy2G03075 Aquilegia oxysepala HOM05D001137 ORTHO05D005066 8.5e-52 208.4 311 54.3
ClCG00G003670 Citrullus lanatus HOM05D001137 ORTHO05D005066 3.9e-49 199.5 290 53.4
unitig_748.g8584 Utricularia gibba HOM05D001137 ORTHO05D005066 1.8e-46 190.7 327 48.9
CDE05G0074 Ceratophyllum demersum HOM05D001137 ORTHO05D005066 1.9e-43 180.6 288 53.8
Os12g0538800 Oryza sativa ssp. japonica HOM05D001137 ORTHO05D005066 4.7e-42 176.0 336 49.7
Dinv38312 Davidia involucrata HOM05D001137 ORTHO05D005066 2.8e-39 166.8 86 97.7
CSS0008512 Camellia sinensis var. sinensis HOM05D001137 ORTHO05D005066 3.7e-39 166.4 197 50.8
Zm00001eb410440 Zea mays HOM05D001137 ORTHO05D005066 2.7e-34 150.2 326 44.2
SEGI_27339 Sequoiadendron giganteum HOM05D001137 ORTHO05D005066 6.8e-33 145.6 182 56.6
Dinv38313 Davidia involucrata HOM05D001137 ORTHO05D005066 2.4e-30 137.1 186 48.9
Ca_00560_v3 Cicer arietinum L. HOM05D001137 ORTHO05D005066 5.0e-28 129.4 223 42.2
Psat4g027640 Pisum sativum HOM05D001137 ORTHO05D005066 3.6e-26 123.2 203 47.8
arahy.Tifrunner.gnm1.ann1.8I1ERN Arachis hypogaea HOM05D001137 ORTHO05D005066 6.1e-26 122.5 138 72.5
Eucgr.H03862 Eucalyptus grandis HOM05D001137 ORTHO05D005066 2.6e-24 117.1 100 65.0
arahy.Tifrunner.gnm1.ann1.CD5QST Arachis hypogaea HOM05D001137 ORTHO05D005066 3.1e-22 110.2 57 96.5
Zm00001eb165710 Zea mays HOM05D001137 ORTHO05D005066 2.7e-21 107.1 293 41.0
Dinv44410 Davidia involucrata HOM05D001137 ORTHO05D005066 2.3e-20 104.0 216 38.4
AagrBONN_evm.TU.Sc2ySwM_344.1606 Anthoceros agrestis HOM05D001137 ORTHO05D005066 3.8e-20 103.2 161 55.3
TAR362G1170 Trochodendron aralioides HOM05D001137 ORTHO05D005066 1.1e-19 101.7 115 52.2
Pp3c11_2880 Physcomitrium patens HOM05D001137 ORTHO05D005066 1.2e-18 98.2 71 67.6
SMO141G0291 Selaginella moellendorffii HOM05D001137 ORTHO05D005066 8.9e-17 92.0 55 80.0
Pp3c1_4300 Physcomitrium patens HOM05D001137 ORTHO05D005066 2.6e-16 90.5 64 67.2
BolC2t06908H Brassica oleracea HOM05D000116 ORTHO05D000133 3.4e-16 90.1 67 71.6
Pp3c7_20910 Physcomitrium patens HOM05D001137 ORTHO05D005066 3.7e-15 86.7 73 58.9
Mapoly0008s0142 Marchantia polymorpha HOM05D001137 ORTHO05D005066 1.1e-14 85.1 54 72.2
Pp3c23_20210 Physcomitrium patens HOM05D001137 ORTHO05D005066 5.9e-13 79.3 66 54.5
C02p10070 Brassica napus HOM05D001137 ORTHO05D005066 2.1e-10 70.9 48 77.1
PGSC0003DMG400019543 Solanum tuberosum HOM05D001137 ORTHO05D005066 1.4e-09 68.2 49 67.3
BcaC03g13611 Brassica carinata HOM05D001137 ORTHO05D015478 5.2e-09 66.2 67 50.7


User provided reference genes

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