Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G1992 Fragaria x ananassa HOM05D003533 ORTHO05D004009 5.9e-42 173.7 83 100.0
FvH4_4g35190 Fragaria vesca HOM05D003533 ORTHO05D004009 2.9e-41 171.4 83 98.8
FAN22G0766 Fragaria x ananassa HOM05D003533 ORTHO05D004009 2.1e-39 165.2 83 95.2
FAN07G1024 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.8e-38 162.2 83 94.0
FAN17G1844 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.5e-37 159.1 83 91.6
RcHm_v2.0_Chr4g0444801 Rosa chinensis HOM05D003533 ORTHO05D004009 3.7e-36 154.5 83 89.2
Manes.06G100300 Manihot esculenta HOM05D003533 ORTHO05D004009 6.3e-20 100.5 86 61.6
MD16G1084900 Malus domestica HOM05D003533 ORTHO05D004009 4.1e-19 97.8 86 60.5
QL10p012332 Quercus lobata HOM05D003533 ORTHO05D004009 4.5e-18 94.4 83 61.4
Manes.14G070400 Manihot esculenta HOM05D003533 ORTHO05D004009 1.0e-17 93.2 85 58.8
Thecc.03G004200 Theobroma cacao HOM05D003533 ORTHO05D004009 2.9e-17 91.7 84 56.0
ECA247G1125 Erigeron canadensis HOM05D003533 ORTHO05D004009 6.5e-17 90.5 85 58.8
Lsat_1_v5_gn_1_12101 Lactuca sativa HOM05D003533 ORTHO05D004009 8.5e-17 90.1 90 58.9
CiPaw.06G076000 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.1e-16 89.7 85 57.6
CiPaw.06G076100 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.1e-16 89.7 85 57.6
CiPaw.06G076200 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.1e-16 89.7 85 57.6
Thecc.03G004000 Theobroma cacao HOM05D003533 ORTHO05D004009 1.9e-16 89.0 84 54.8
TAR629G1875 Trochodendron aralioides HOM05D003533 ORTHO05D004009 1.9e-16 89.0 84 59.5
CANSAT54G2961 Cannabis sativa HOM05D003533 ORTHO05D004009 2.5e-16 88.6 79 59.5
TAR622G1413 Trochodendron aralioides HOM05D003533 ORTHO05D004009 2.5e-16 88.6 82 59.8
Prupe.1G261100 Prunus persica HOM05D003533 ORTHO05D004009 3.2e-16 88.2 84 56.0
CiPaw.06G076300 Carya illinoinensis HOM05D003533 ORTHO05D004009 4.2e-16 87.8 85 56.5
vmacro16587 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 4.2e-16 87.8 83 57.8
Gohir.A05G319400 Gossypium hirsutum HOM05D003533 ORTHO05D004009 7.2e-16 87.0 81 60.5
Lsat_1_v5_gn_1_11280 Lactuca sativa HOM05D003533 ORTHO05D004009 7.2e-16 87.0 83 56.6
CSS0013527 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 9.4e-16 86.7 86 57.0
CSS0016862 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 9.4e-16 86.7 86 57.0
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 9.4e-16 86.7 73 60.3
TWI15G0955 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 2.7e-15 85.1 82 56.1
FAN18G0586 Fragaria x ananassa HOM05D003533 ORTHO05D004009 3.6e-15 84.7 83 55.4
Gohir.D05G321600 Gossypium hirsutum HOM05D003533 ORTHO05D004009 4.7e-15 84.3 81 59.3
Gorai.009G345100 Gossypium raimondii HOM05D003533 ORTHO05D004009 4.7e-15 84.3 81 59.3
Lalb_Chr12g0201361 Lupinus albus HOM05D003533 ORTHO05D004009 4.7e-15 84.3 70 61.4
Medtr4g106500 Medicago truncatula HOM05D003533 ORTHO05D004009 4.7e-15 84.3 79 58.2
Phvul.003G196800 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 4.7e-15 84.3 74 58.1
Glyma.05G033600 Glycine max HOM05D003533 ORTHO05D004009 8.0e-15 83.6 80 55.0
Hma1.2p1_0002F.1_g002860 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 8.0e-15 83.6 78 59.0
Lj4g0015145 Lotus japonicus HOM05D003533 ORTHO05D004009 1.0e-14 83.2 81 56.8
Oeu005054.1 Olea europaea HOM05D003533 ORTHO05D004009 1.0e-14 83.2 75 60.0
QL03p067197 Quercus lobata HOM05D003533 ORTHO05D004009 1.0e-14 83.2 74 58.1
Nitab4.5_0002059g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 1.4e-14 82.8 82 57.3
AT1G19020 Arabidopsis thaliana HOM05D003533 ORTHO05D004009 2.3e-14 82.0 84 51.2
COL.COLO4_37881 Corchorus olitorius HOM05D003533 ORTHO05D004009 2.3e-14 82.0 85 55.3
Glyma.17G093500 Glycine max HOM05D003533 ORTHO05D004009 2.3e-14 82.0 83 56.6
HanXRQChr09g0237871 Helianthus annuus HOM05D003533 ORTHO05D004009 2.3e-14 82.0 73 58.9
Oeu005690.1 Olea europaea HOM05D003533 ORTHO05D004009 2.3e-14 82.0 72 58.3
Rhsim12G0161500 Rhododendron simsii HOM05D003533 ORTHO05D004009 2.3e-14 82.0 83 56.6
CiPaw.12G022900 Carya illinoinensis HOM05D003533 ORTHO05D004009 3.0e-14 81.6 86 55.8
AL1G31580 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 5.2e-14 80.9 82 51.2
Thecc.02G240400 Theobroma cacao HOM05D003533 ORTHO05D004009 5.2e-14 80.9 75 58.7
TWI81G0654 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 5.2e-14 80.9 74 56.8
Duzib084G0973 Durio zibethinus HOM05D003533 ORTHO05D004009 6.8e-14 80.5 87 52.9
Eucgr.B00337 Eucalyptus grandis HOM05D003533 ORTHO05D004009 8.8e-14 80.1 74 59.5
Hma1.2p1_0160F.1_g070540 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 8.8e-14 80.1 80 53.8
Lalb_Chr12g0201351 Lupinus albus HOM05D003533 ORTHO05D004009 8.8e-14 80.1 70 58.6
Peaxi162Scf01141g00003 Petunia axillaris HOM05D003533 ORTHO05D004009 8.8e-14 80.1 85 55.3
Nitab4.5_0002059g0090 Nicotiana tabacum HOM05D003533 ORTHO05D004009 1.5e-13 79.3 91 50.5
Oeu017591.1 Olea europaea HOM05D003533 ORTHO05D004009 1.5e-13 79.3 83 50.6
PSO013G0048 Papaver somniferum HOM05D003533 ORTHO05D004009 1.5e-13 79.3 84 52.4
BcaB03g12939 Brassica carinata HOM05D003533 ORTHO05D004009 2.0e-13 79.0 76 53.9
Nitab4.5_0002312g0110 Nicotiana tabacum HOM05D003533 ORTHO05D004009 2.6e-13 78.6 81 53.1
SalBow2G1603 Salvia bowleyana HOM05D003533 ORTHO05D004009 2.6e-13 78.6 83 50.6
SalBow2G3186 Salvia bowleyana HOM05D003533 ORTHO05D004009 2.6e-13 78.6 83 50.6
CAN.G159.12 Capsicum annuum HOM05D003533 ORTHO05D004009 3.4e-13 78.2 83 50.6
Glyma.06G186200 Glycine max HOM05D003533 ORTHO05D004009 4.4e-13 77.8 74 54.1
BcaC07g41276 Brassica carinata HOM05D003533 ORTHO05D004009 5.7e-13 77.4 84 47.6
CARHR019640 Cardamine hirsuta HOM05D003533 ORTHO05D004009 7.5e-13 77.0 76 52.6
A09p59550 Brassica napus HOM05D003533 ORTHO05D004009 9.8e-13 76.6 82 50.0
BcaB03g14468 Brassica carinata HOM05D003533 ORTHO05D004009 1.3e-12 76.3 81 53.1
BcaB07g31922 Brassica carinata HOM05D003533 ORTHO05D004009 1.7e-12 75.9 82 50.0
Glyma.04G178500 Glycine max HOM05D003533 ORTHO05D004009 1.7e-12 75.9 74 54.1
MD14G1187200 Malus domestica HOM05D003533 ORTHO05D004009 1.7e-12 75.9 74 56.8
A06p15230 Brassica napus HOM05D003533 ORTHO05D004009 2.2e-12 75.5 83 48.2
BraA06t24637Z Brassica rapa HOM05D003533 ORTHO05D004009 2.2e-12 75.5 83 48.2
TPR.G37447 Trifolium pratense HOM05D003533 ORTHO05D004009 2.2e-12 75.5 70 58.6
FAN13G2147 Fragaria x ananassa HOM05D003533 ORTHO05D004009 2.8e-12 75.1 83 55.4
Nitab4.5_0002312g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 2.8e-12 75.1 92 48.9
Lsat_1_v5_gn_1_11220 Lactuca sativa HOM05D003533 ORTHO05D004009 3.7e-12 74.7 83 51.8
Rhsim12G0161400 Rhododendron simsii HOM05D003533 ORTHO05D004009 3.7e-12 74.7 68 58.8
Ah.02g112790 Amaranthus hybridus HOM05D003533 ORTHO05D004009 4.8e-12 74.3 92 50.0
Aqoxy3G03117 Aquilegia oxysepala HOM05D003533 ORTHO05D004009 4.8e-12 74.3 86 52.3
COL.COLO4_21432 Corchorus olitorius HOM05D003533 ORTHO05D004009 6.3e-12 73.9 76 53.9
Migut.I00058 Erythranthe guttata HOM05D003533 ORTHO05D004009 6.3e-12 73.9 68 57.4
Eucgr.K02881 Eucalyptus grandis HOM05D003533 ORTHO05D004009 6.3e-12 73.9 90 46.7
MBI14_g31145_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 6.3e-12 73.9 79 53.2
Sp1g16980 Schrenkiella parvula HOM05D003533 ORTHO05D004009 6.3e-12 73.9 83 45.8
MELO3C017124.2 Cucumis melo HOM05D003533 ORTHO05D004009 8.3e-12 73.6 88 48.9
Medtr3g078420 Medicago truncatula HOM05D003533 ORTHO05D004009 1.1e-11 73.2 74 52.7
Cc11_g14110 Coffea canephora HOM05D003533 ORTHO05D004009 1.4e-11 72.8 83 50.6
PGSC0003DMG400022647 Solanum tuberosum HOM05D003533 ORTHO05D004009 1.4e-11 72.8 76 55.3
AL5G27512 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 1.8e-11 72.4 77 50.6
MD06G1181300 Malus domestica HOM05D003533 ORTHO05D004009 1.8e-11 72.4 79 54.4
PSO013G0065 Papaver somniferum HOM05D003533 ORTHO05D004009 1.8e-11 72.4 79 53.2
C08p19120 Brassica napus HOM05D003533 ORTHO05D004009 2.4e-11 72.0 54 63.0
MBI14_g31147_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 2.4e-11 72.0 77 51.9
BolC8t49535H Brassica oleracea HOM05D003533 ORTHO05D004009 3.1e-11 71.6 54 63.0
PGR083G0433 Punica granatum HOM05D003533 ORTHO05D004009 3.1e-11 71.6 89 50.6
CiPaw.11G032200 Carya illinoinensis HOM05D003533 ORTHO05D004009 4.1e-11 71.2 92 48.9
Sed0002579 Sechium edule HOM05D003533 ORTHO05D004009 4.1e-11 71.2 73 50.7
A08p30040 Brassica napus HOM05D003533 ORTHO05D004009 5.4e-11 70.9 72 51.4
BraA08t34939Z Brassica rapa HOM05D003533 ORTHO05D004009 5.4e-11 70.9 72 51.4
Phvul.009G182200 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 5.4e-11 70.9 74 51.4
Actinidia34961 Actinidia chinensis HOM05D003533 ORTHO05D004009 7.0e-11 70.5 86 46.5
Aa31LG4G16780 Aethionema arabicum HOM05D003533 ORTHO05D004009 7.0e-11 70.5 82 46.3
Thhalv10009213m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 7.0e-11 70.5 85 45.9
Psat0s489g0040 Pisum sativum HOM05D003533 ORTHO05D004009 9.1e-11 70.1 74 52.7
C08p42830 Brassica napus HOM05D003533 ORTHO05D004009 1.2e-10 69.7 74 48.6
BolC8t51839H Brassica oleracea HOM05D003533 ORTHO05D004009 1.2e-10 69.7 74 48.6
Actinidia19080 Actinidia chinensis HOM05D003533 ORTHO05D004009 1.6e-10 69.3 78 52.6
Migut.L01388 Erythranthe guttata HOM05D003533 ORTHO05D004009 1.6e-10 69.3 82 51.2
Sc04g0002090 Simmondsia chinensis HOM05D003533 ORTHO05D004009 1.6e-10 69.3 86 46.5
BraA09t41332Z Brassica rapa HOM05D003533 ORTHO05D004009 2.0e-10 68.9 74 48.6
Cfa009093 Carpinus fangiana HOM05D003533 ORTHO05D004009 2.0e-10 68.9 88 44.3
Ciclev10023101m.g Citrus clementina HOM05D003533 ORTHO05D004009 2.0e-10 68.9 84 46.4
Cfa019066 Carpinus fangiana HOM05D003533 ORTHO05D004009 4.5e-10 67.8 79 51.9
TPR.G31485 Trifolium pratense HOM05D003533 ORTHO05D004009 4.5e-10 67.8 74 52.7
unitig_22.g6479 Utricularia gibba HOM05D003533 ORTHO05D004009 4.5e-10 67.8 81 45.7
BcaC05g25801 Brassica carinata HOM05D003533 ORTHO05D004009 5.9e-10 67.4 82 46.3
BcaC05g25802 Brassica carinata HOM05D003533 ORTHO05D004009 5.9e-10 67.4 82 46.3
C05p17410 Brassica napus HOM05D003533 ORTHO05D004009 5.9e-10 67.4 82 46.3
BolC5t30441H Brassica oleracea HOM05D003533 ORTHO05D004009 5.9e-10 67.4 82 46.3
ECA247G3580 Erigeron canadensis HOM05D003533 ORTHO05D004009 7.7e-10 67.0 86 48.8
Thhalv10010873m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 7.7e-10 67.0 87 44.8
Solyc05g006390.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 7.7e-10 67.0 82 45.1
Sopen05g002310 Solanum pennellii HOM05D003533 ORTHO05D004009 7.7e-10 67.0 82 45.1
Rhsim12G0161300 Rhododendron simsii HOM05D003533 ORTHO05D004009 1.3e-09 66.2 76 48.7
DCAR_026103 Daucus carota HOM05D003533 ORTHO05D004009 1.7e-09 65.9 80 53.8
Lj1g0014022 Lotus japonicus HOM05D003533 ORTHO05D004009 1.7e-09 65.9 74 48.6
MBI14_g31148_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D011084 1.7e-09 65.9 70 50.0
Migut.E00134 Erythranthe guttata HOM05D003533 ORTHO05D004009 2.2e-09 65.5 74 45.9
Eucgr.C02738 Eucalyptus grandis HOM05D003533 ORTHO05D004009 2.2e-09 65.5 87 46.0
Hma1.2p1_0572F.1_g180980 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 2.9e-09 65.1 74 47.3
Zm00001eb254120 Zea mays HOM05D003533 ORTHO05D004009 2.9e-09 65.1 82 47.6
Prupe.5G179600 Prunus persica HOM05D003533 ORTHO05D004009 5.0e-09 64.3 75 52.0
Ca_16210_v3 Cicer arietinum L. HOM05D003533 ORTHO05D004009 6.5e-09 63.9 74 47.3
Nitab4.5_0003386g0040 Nicotiana tabacum HOM05D003533 ORTHO05D004009 6.5e-09 63.9 84 48.8
ATR0712G093 Amborella trichopoda HOM05D003533 ORTHO05D004009 8.5e-09 63.5 78 50.0
Sp5g13860 Schrenkiella parvula HOM05D003533 ORTHO05D004009 8.5e-09 63.5 77 45.5
ATR0712G042 Amborella trichopoda HOM05D003533 ORTHO05D004009 1.1e-08 63.2 79 49.4
Carub.0005s1428 Capsella rubella HOM05D003533 ORTHO05D004009 1.1e-08 63.2 76 44.7
Oeu060842.1 Olea europaea HOM05D003533 ORTHO05D004009 1.1e-08 63.2 80 46.2
Ciclev10033215m.g Citrus clementina HOM05D003533 ORTHO05D004009 1.9e-08 62.4 71 49.3
Cc11_g14120 Coffea canephora HOM05D003533 ORTHO05D004009 2.5e-08 62.0 72 47.2
CsaV3_1G001820 Cucumis sativus L. HOM05D003533 ORTHO05D004009 2.5e-08 62.0 84 44.0
DCAR_016506 Daucus carota HOM05D003533 ORTHO05D004009 2.5e-08 62.0 71 46.5
CARHR156900 Cardamine hirsuta HOM05D003533 ORTHO05D004009 3.2e-08 61.6 80 43.8
Atru.chr11.1939 Acer truncatum HOM05D003533 ORTHO05D004009 5.5e-08 60.8 76 44.7
Carub.0001s1865 Capsella rubella HOM05D003533 ORTHO05D004009 5.5e-08 60.8 84 41.7
Aa31LG7G3800 Aethionema arabicum HOM05D006783 ORTHO05D008330 7.2e-08 60.5 75 48.0
HanXRQChr09g0271891 Helianthus annuus HOM05D003533 ORTHO05D004009 9.4e-08 60.1 70 47.1
Solyc03g113810.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 9.4e-08 60.1 84 45.2
THA.LOC104821473 Tarenaya hassleriana HOM05D003533 ORTHO05D004009 9.4e-08 60.1 73 43.8
Os06g0239200 Oryza sativa ssp. japonica HOM05D003533 ORTHO05D004009 3.6e-07 58.2 82 45.1
Sopen03g032860 Solanum pennellii HOM05D003533 ORTHO05D004009 4.7e-07 57.8 85 43.5
Prupe.1G261200 Prunus persica HOM05D003533 ORTHO05D004009 6.1e-07 57.4 89 43.8
Os02g0740600 Oryza sativa ssp. japonica HOM05D003533 ORTHO05D004009 1.0e-06 56.6 77 45.5
THA.LOC109116673 Tarenaya hassleriana HOM05D003533 ORTHO05D004009 1.0e-06 56.6 75 44.0
CSS0048422 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 1.8e-06 55.8 69 49.3
Potri.015G070700 Populus trichocarpa HOM05D003533 ORTHO05D004009 1.8e-06 55.8 84 44.0
Rhsim08G0167600 Rhododendron simsii HOM05D003533 ORTHO05D004009 3.0e-06 55.1 83 45.8
RcHm_v2.0_Chr7g0179751 Rosa chinensis HOM05D003533 ORTHO05D004009 4.0e-06 54.7 81 44.4
PGSC0003DMG400024583 Solanum tuberosum HOM05D003533 ORTHO05D004009 4.0e-06 54.7 84 41.7
THA.LOC109116474 Tarenaya hassleriana HOM05D003533 ORTHO05D004009 4.0e-06 54.7 77 41.6
Sabra15G0095000 Salix brachista HOM05D003533 ORTHO05D004009 5.2e-06 54.3 85 42.4
Sabra15G0095900 Salix brachista HOM05D003533 ORTHO05D004009 5.2e-06 54.3 85 42.4
SalBow5G4118 Salvia bowleyana HOM05D003533 ORTHO05D004009 5.2e-06 54.3 52 55.8
Actinidia34960 Actinidia chinensis HOM05D003533 ORTHO05D004009 6.8e-06 53.9 50 60.0
CDE07G1253 Ceratophyllum demersum HOM05D000502 ORTHO05D000356 8.8e-06 53.5 72 41.7


User provided reference genes

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