Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G1990 Fragaria x ananassa HOM05D006025 ORTHO05D008547 3.7e-166 588.2 311 100.0
FvH4_4g32070 Fragaria vesca HOM05D006025 ORTHO05D008547 6.0e-164 580.9 315 98.4
FAN07G0827 Fragaria x ananassa HOM05D006025 ORTHO05D008547 4.4e-159 564.7 317 95.0
FAN22G0508 Fragaria x ananassa HOM05D006025 ORTHO05D008547 2.2e-158 562.4 315 94.9
RcHm_v2.0_Chr4g0440761 Rosa chinensis HOM05D006025 ORTHO05D008547 1.9e-141 506.1 320 85.3
Prupe.1G267200 Prunus persica HOM05D006025 ORTHO05D008547 8.7e-123 444.1 326 76.4
MD16G1079500 Malus domestica HOM05D006025 ORTHO05D008547 2.3e-115 419.5 323 73.4
MD13G1079600 Malus domestica HOM05D006025 ORTHO05D008547 1.1e-112 410.6 326 72.4
Dinv34195 Davidia involucrata HOM05D006025 ORTHO05D008547 5.5e-109 398.3 303 72.9
Thecc.02G232800 Theobroma cacao HOM05D006025 ORTHO05D008547 9.4e-109 397.5 315 69.5
CANSAT78G1034 Cannabis sativa HOM05D006025 ORTHO05D008547 1.2e-108 397.1 319 68.3
Cfa009042 Carpinus fangiana HOM05D006025 ORTHO05D008547 1.5e-106 390.2 315 69.8
Manes.05G096000 Manihot esculenta HOM05D006025 ORTHO05D008547 1.5e-106 390.2 320 68.4
COL.COLO4_36182 Corchorus olitorius HOM05D006025 ORTHO05D008547 2.0e-106 389.8 318 68.6
Actinidia31175 Actinidia chinensis HOM05D006025 ORTHO05D008547 7.4e-106 387.9 291 73.9
CiPaw.05G140400 Carya illinoinensis HOM05D006025 ORTHO05D008547 8.2e-105 384.4 316 69.3
QL03p065944 Quercus lobata HOM05D006025 ORTHO05D008547 3.1e-104 382.5 314 68.5
PGR119G0173 Punica granatum HOM05D006025 ORTHO05D008547 5.3e-104 381.7 326 69.9
Gorai.009G347000 Gossypium raimondii HOM05D006025 ORTHO05D008547 6.9e-104 381.3 319 66.1
Gohir.A05G321100 Gossypium hirsutum HOM05D006025 ORTHO05D008547 4.5e-103 378.6 320 67.2
Gohir.D05G323300 Gossypium hirsutum HOM05D006025 ORTHO05D008547 7.7e-103 377.9 319 65.5
Rhsim12G0129700 Rhododendron simsii HOM05D006025 ORTHO05D008547 1.0e-102 377.5 308 70.5
Lj2g0002167 Lotus japonicus HOM05D006025 ORTHO05D008547 1.3e-102 377.1 243 79.8
Sabra10G0030400 Salix brachista HOM05D006025 ORTHO05D008547 1.3e-102 377.1 248 78.6
Ciclev10032129m.g Citrus clementina HOM05D006025 ORTHO05D008547 1.7e-102 376.7 242 79.3
GSVIVG01020079001 Vitis vinifera HOM05D006025 ORTHO05D008547 2.2e-102 376.3 273 74.4
CsaV3_5G032300 Cucumis sativus L. HOM05D006025 ORTHO05D008547 3.8e-102 375.6 245 80.8
Lj6A795T74 Lonicera japonica HOM05D006025 ORTHO05D008547 5.0e-102 375.2 303 68.3
MELO3C012062.2 Cucumis melo HOM05D006025 ORTHO05D008547 2.5e-101 372.9 245 80.0
Medtr5g037600 Medicago truncatula HOM05D006025 ORTHO05D008547 4.2e-101 372.1 311 66.9
Potri.010G034400 Populus trichocarpa HOM05D006025 ORTHO05D008547 4.2e-101 372.1 243 79.0
Sc11g0001660 Simmondsia chinensis HOM05D006025 ORTHO05D008547 7.2e-101 371.3 321 67.0
Sed0022227 Sechium edule HOM05D006025 ORTHO05D008547 2.1e-100 369.8 309 67.3
Atru.chr11.1861 Acer truncatum HOM05D006025 ORTHO05D008547 3.6e-100 369.0 318 66.4
ClCG05G024630 Citrullus lanatus HOM05D006025 ORTHO05D008547 3.6e-100 369.0 306 67.6
vmacro16324 Vaccinium macrocarpon HOM05D006025 ORTHO05D008547 4.7e-100 368.6 351 62.4
CAN.G27.7 Capsicum annuum HOM05D006025 ORTHO05D008547 6.1e-100 368.2 243 79.4
Glyma.01G040500 Glycine max HOM05D006025 ORTHO05D008547 1.0e-99 367.5 322 63.7
Lalb_Chr05g0217521 Lupinus albus HOM05D006025 ORTHO05D008547 2.3e-99 366.3 317 64.7
Phvul.002G080900 Phaseolus vulgaris HOM05D006025 ORTHO05D008547 2.3e-99 366.3 321 63.9
Nitab4.5_0000679g0100 Nicotiana tabacum HOM05D006025 ORTHO05D008547 6.7e-99 364.8 237 79.3
TWI18G0579 Tripterygium wilfordii HOM05D006025 ORTHO05D008547 8.8e-99 364.4 321 62.9
Migut.E00118 Erythranthe guttata HOM05D006025 ORTHO05D008547 3.3e-98 362.5 245 76.7
Cpa.g.sc73.14 Carica papaya HOM05D006025 ORTHO05D008547 9.7e-98 360.9 324 65.1
TPR.G26717 Trifolium pratense HOM05D006025 ORTHO05D008547 1.3e-97 360.5 242 76.9
Ca_04692_v3 Cicer arietinum L. HOM05D006025 ORTHO05D008547 2.2e-97 359.8 324 62.7
EL10Ac6g13142 Beta vulgaris HOM05D006025 ORTHO05D008547 2.8e-97 359.4 297 65.7
VMungo1215G1908 Vigna mungo HOM05D006025 ORTHO05D008547 3.7e-97 359.0 303 66.0
Duzib268G1145 Durio zibethinus HOM05D006025 ORTHO05D008547 1.1e-96 357.5 294 67.0
Hund25274 Selenicereus undatus HOM05D006025 ORTHO05D008547 1.4e-96 357.1 308 67.2
Migut.L01348 Erythranthe guttata HOM05D006025 ORTHO05D008547 1.8e-96 356.7 284 67.6
Thhalv10004613m.g Eutrema salsugineum HOM05D006025 ORTHO05D008547 3.1e-96 355.9 317 63.4
Cc11_g13550 Coffea canephora HOM05D006025 ORTHO05D008547 7.0e-96 354.8 326 63.8
TAR481G0011 Trochodendron aralioides HOM05D006025 ORTHO05D008547 9.1e-96 354.4 300 65.3
Carub.0005s0158 Capsella rubella HOM05D006025 ORTHO05D008547 2.0e-95 353.2 321 63.2
SalBow8G3437 Salvia bowleyana HOM05D006025 ORTHO05D008547 2.0e-95 353.2 319 64.6
Psat2g115440 Pisum sativum HOM05D006025 ORTHO05D008547 1.7e-94 350.1 319 62.1
arahy.Tifrunner.gnm1.ann1.1ZL8TB Arachis hypogaea HOM05D006025 ORTHO05D008547 5.0e-94 348.6 237 75.5
AL5G11850 Arabidopsis lyrata HOM05D006025 ORTHO05D008547 1.5e-93 347.1 323 61.9
arahy.Tifrunner.gnm1.ann1.V5YJYF Arachis hypogaea HOM05D006025 ORTHO05D008547 1.9e-93 346.7 237 74.7
THA.LOC104805137 Tarenaya hassleriana HOM05D000131 ORTHO05D000086 3.2e-93 345.9 320 61.6
BolC7t43841H Brassica oleracea HOM05D006025 ORTHO05D008547 7.2e-93 344.7 228 78.1
DCAR_024490 Daucus carota HOM05D006025 ORTHO05D008547 9.4e-93 344.4 210 83.8
Sp2g13810 Schrenkiella parvula HOM05D006025 ORTHO05D008547 1.2e-92 344.0 319 61.1
BcaC06g31223 Brassica carinata HOM05D006025 ORTHO05D008547 2.1e-92 343.2 316 61.4
AT2G02590 Arabidopsis thaliana HOM05D006025 ORTHO05D008547 1.0e-91 340.9 323 61.6
A06p43550 Brassica napus HOM05D006025 ORTHO05D008547 2.3e-91 339.7 245 73.5
BraA09t37996Z Brassica rapa HOM05D006025 ORTHO05D008547 2.3e-91 339.7 317 59.9
Nn4g23031 Nelumbo nucifera HOM05D006025 ORTHO05D008547 2.3e-91 339.7 335 60.6
A09p23920 Brassica napus HOM05D006025 ORTHO05D008547 3.0e-91 339.3 315 59.4
MSTRG.7831 Avicennia marina HOM05D006025 ORTHO05D008547 6.7e-91 338.2 293 65.9
BraA06t27240Z Brassica rapa HOM05D006025 ORTHO05D008547 6.7e-91 338.2 228 77.2
Ah.03g132040 Amaranthus hybridus HOM05D006025 ORTHO05D008547 1.1e-90 337.4 265 68.3
BcaC06g34048 Brassica carinata HOM05D006025 ORTHO05D008547 1.5e-90 337.0 316 61.4
C07p33300 Brassica napus HOM05D006025 ORTHO05D008547 1.5e-90 337.0 316 61.4
Aa31LG2G7560 Aethionema arabicum HOM05D006025 ORTHO05D008547 3.3e-90 335.9 319 61.4
Lsat_1_v5_gn_3_49700 Lactuca sativa HOM05D006025 ORTHO05D008547 4.4e-90 335.5 305 63.9
Aqoxy3G00786 Aquilegia oxysepala HOM05D006025 ORTHO05D008547 5.7e-90 335.1 249 71.5
Sopen05g002930 Solanum pennellii HOM05D006025 ORTHO05D008547 5.7e-90 335.1 319 62.1
HanXRQChr15g0478181 Helianthus annuus HOM05D006025 ORTHO05D008547 7.4e-90 334.7 300 63.3
Haze_12072 Corylus avellana HOM05D006025 ORTHO05D008547 9.7e-90 334.3 288 66.7
BcaC04g21520 Brassica carinata HOM05D006025 ORTHO05D008547 3.1e-88 329.3 310 59.7
C09p30780 Brassica napus HOM05D006025 ORTHO05D008547 5.3e-88 328.6 296 61.5
BolC9t55941H Brassica oleracea HOM05D006025 ORTHO05D008547 7.0e-88 328.2 291 62.2
AUR62026262 Chenopodium quinoa HOM05D006025 ORTHO05D008547 1.6e-87 327.0 211 78.2
Oeu044566.1 Olea europaea HOM05D006025 ORTHO05D008547 1.6e-87 327.0 291 66.0
PGSC0003DMG400017619 Solanum tuberosum HOM05D006025 ORTHO05D008547 2.0e-87 326.6 315 61.6
CSS0050443 Camellia sinensis var. sinensis HOM05D006025 ORTHO05D008547 5.9e-87 325.1 198 83.3
Nitab4.5_0002969g0040 Nicotiana tabacum HOM05D006025 ORTHO05D008547 5.9e-87 325.1 244 71.7
PSO478G1322 Papaver somniferum HOM05D006025 ORTHO05D008547 7.7e-87 324.7 258 68.6
CARHR145110 Cardamine hirsuta HOM05D006025 ORTHO05D008547 1.7e-86 323.6 314 58.9
ATR0665G167 Amborella trichopoda HOM05D006025 ORTHO05D008547 2.9e-86 322.8 274 66.8
MBI04_g22196_MAGBIO Magnolia biondii HOM05D006025 ORTHO05D008547 2.9e-86 322.8 199 80.4
HanXRQChr17g0544581 Helianthus annuus HOM05D006025 ORTHO05D008547 5.0e-86 322.0 247 70.4
Peaxi162Scf00209g00517 Petunia axillaris HOM05D006025 ORTHO05D008547 1.2e-84 317.4 242 71.5
AUR62026454 Chenopodium quinoa HOM05D006025 ORTHO05D008547 4.0e-83 312.4 211 77.7
Eucgr.B02589 Eucalyptus grandis HOM05D006025 ORTHO05D008547 4.4e-82 308.9 202 77.7
SalBow2G1916 Salvia bowleyana HOM05D006025 ORTHO05D008547 1.3e-81 307.4 313 58.1
ECA246G2177 Erigeron canadensis HOM05D006025 ORTHO05D008547 8.3e-81 304.7 197 80.2
BcaB07g30697 Brassica carinata HOM05D006025 ORTHO05D008547 1.1e-80 304.3 289 60.2
Os03g0800500 Oryza sativa ssp. japonica HOM05D006025 ORTHO05D008547 7.7e-79 298.1 205 72.7
SGA_v2.0_scaffold87G26972 Striga asiatica HOM05D006025 ORTHO05D008547 6.5e-78 295.0 315 54.9
unitig_62.g23684 Utricularia gibba HOM05D006025 ORTHO05D008547 3.2e-77 292.7 289 57.1
SEGI_16485 Sequoiadendron giganteum HOM05D006025 ORTHO05D008547 3.3e-69 266.2 297 49.2
Zm00001eb212770 Zea mays HOM05D006025 ORTHO05D008547 1.0e-67 261.2 199 66.3
Mapoly0001s0092 Marchantia polymorpha HOM05D006025 ORTHO05D008547 9.2e-64 248.1 213 59.6
AagrBONN_evm.TU.Sc2ySwM_117.678 Anthoceros agrestis HOM05D006025 ORTHO05D008547 5.9e-63 245.4 242 55.0
SMO147G0037 Selaginella moellendorffii HOM05D006025 ORTHO05D008547 8.0e-60 235.0 212 54.7
CBR_g39595 Chara braunii HOM05D006025 ORTHO05D008547 2.3e-59 233.4 199 56.8
Pp3c22_2360 Physcomitrium patens HOM05D006025 ORTHO05D008547 3.9e-54 216.1 200 55.0
HPP92_018837 Vanilla planifolia HOM05D006025 ORTHO05D008547 5.0e-54 215.7 150 72.0
CDE07G0470 Ceratophyllum demersum HOM05D006025 ORTHO05D008547 2.0e-50 203.8 241 49.4
Glyma.02G024100 Glycine max HOM05D006025 ORTHO05D008547 8.1e-36 155.2 203 50.2
CDE06G2488 Ceratophyllum demersum HOM05D006025 ORTHO05D008547 3.1e-35 153.3 178 48.3
SEGI_34054 Sequoiadendron giganteum HOM05D006025 ORTHO05D008547 6.8e-35 152.1 110 68.2
Solyc05g006965.1 Solanum lycopersicum HOM05D006025 ORTHO05D008547 3.5e-31 139.8 180 50.0
Hma1.2p1_0808F.1_g221580 Hydrangea macrophylla HOM05D006025 ORTHO05D008547 1.6e-20 104.4 75 74.7
Hma1.2p1_0513F.1_g169540 Hydrangea macrophylla HOM05D006025 ORTHO05D008547 2.4e-19 100.5 75 73.3
DCAR_001229 Daucus carota HOM05D006025 ORTHO05D008547 1.5e-13 81.3 50 84.0
Zm00001eb151370 Zea mays HOM05D006025 ORTHO05D443914 1.5e-10 71.2 56 67.9
Dinv16285 Davidia involucrata HOM05D000027 ORTHO05D000500 3.8e-09 66.6 38 92.1


User provided reference genes

Program Settings