Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G1983 Fragaria x ananassa HOM05D006559 ORTHO05D008867 0.0e+00 1339.7 676 100.0
FvH4_4g19640 Fragaria vesca HOM05D006559 ORTHO05D008867 0.0e+00 1300.4 676 97.8
RcHm_v2.0_Chr4g0424901 Rosa chinensis HOM05D006559 ORTHO05D008867 0.0e+00 1137.1 683 83.7
FAN07G1421 Fragaria x ananassa HOM05D006559 ORTHO05D008867 0.0e+00 1121.7 672 86.5
MD13G1155000 Malus domestica HOM05D006559 ORTHO05D008867 1.6e-267 926.0 678 70.6
Prupe.1G118000 Prunus persica HOM05D006559 ORTHO05D008867 4.9e-264 914.4 687 70.2
Cfa008663 Carpinus fangiana HOM05D006559 ORTHO05D008867 4.5e-257 891.3 678 65.3
CANSAT64G0770 Cannabis sativa HOM05D006559 ORTHO05D008867 7.4e-252 874.0 668 65.4
Dinv44291 Davidia involucrata HOM05D006559 ORTHO05D008867 4.4e-244 848.2 671 64.5
vmacro08053 Vaccinium macrocarpon HOM05D006559 ORTHO05D008867 4.8e-243 844.7 672 62.6
Thecc.04G299700 Theobroma cacao HOM05D006559 ORTHO05D008867 1.2e-241 840.1 668 63.9
Sabra10G0111500 Salix brachista HOM05D006559 ORTHO05D008867 1.5e-241 839.7 676 63.2
Potri.010G144400 Populus trichocarpa HOM05D006559 ORTHO05D008867 9.4e-239 830.5 672 62.9
Haze_11682 Corylus avellana HOM05D006559 ORTHO05D008867 2.0e-236 822.8 738 58.5
Hma1.2p1_0078F.1_g039970 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 2.6e-236 822.4 643 64.5
Rhsim04G0235400 Rhododendron simsii HOM05D006559 ORTHO05D008867 7.4e-236 820.8 668 62.4
Manes.03G204300 Manihot esculenta HOM05D006559 ORTHO05D008867 1.1e-234 817.0 677 61.4
GSVIVG01035001001 Vitis vinifera HOM05D006559 ORTHO05D008867 7.7e-233 810.8 674 62.8
Gohir.A09G234700 Gossypium hirsutum HOM05D006559 ORTHO05D008867 1.0e-232 810.4 672 61.5
Cpa.g.sc9.65 Carica papaya HOM05D006559 ORTHO05D008867 1.7e-232 809.7 682 61.1
Gorai.006G258500 Gossypium raimondii HOM05D006559 ORTHO05D008867 2.1e-230 802.7 672 61.2
Gohir.D09G235500 Gossypium hirsutum HOM05D006559 ORTHO05D008867 1.4e-229 800.0 672 60.9
TWI73G0870 Tripterygium wilfordii HOM05D006559 ORTHO05D008867 4.4e-228 795.0 681 60.4
CsaV3_3G015150 Cucumis sativus L. HOM05D006559 ORTHO05D008867 1.6e-225 786.6 679 60.4
Lalb_Chr07g0182081 Lupinus albus HOM05D006559 ORTHO05D008867 1.7e-224 783.1 674 59.5
Eucgr.H04041 Eucalyptus grandis HOM05D006559 ORTHO05D008867 6.5e-224 781.2 672 60.0
MELO3C006713.2 Cucumis melo HOM05D006559 ORTHO05D008867 9.4e-223 777.3 674 60.4
Ca_21444_v3 Cicer arietinum L. HOM05D006559 ORTHO05D008867 3.0e-221 772.3 670 59.3
Lj4g0009670 Lotus japonicus HOM05D006559 ORTHO05D008867 5.2e-221 771.5 670 59.7
CSS0039775 Camellia sinensis var. sinensis HOM05D006559 ORTHO05D008867 1.2e-220 770.4 674 59.3
Medtr4g122000 Medicago truncatula HOM05D006559 ORTHO05D008867 1.5e-220 770.0 670 60.3
DCAR_002509 Daucus carota HOM05D006559 ORTHO05D008867 9.8e-220 767.3 683 59.0
Sc19g0003140 Simmondsia chinensis HOM05D006559 ORTHO05D008867 9.8e-220 767.3 671 58.6
Ciclev10004497m.g Citrus clementina HOM05D006559 ORTHO05D008867 2.8e-219 765.8 680 59.6
VMungo1215G0265 Vigna mungo HOM05D006559 ORTHO05D008867 4.8e-219 765.0 668 60.0
CAN.G244.5 Capsicum annuum HOM05D006559 ORTHO05D008867 4.1e-218 761.9 672 58.0
Hund11970 Selenicereus undatus HOM05D006559 ORTHO05D008867 4.1e-218 761.9 669 58.6
Sed0004607 Sechium edule HOM05D006559 ORTHO05D008867 5.4e-218 761.5 668 59.1
Nn3g21720 Nelumbo nucifera HOM05D006559 ORTHO05D008867 7.7e-217 757.7 670 59.7
arahy.Tifrunner.gnm1.ann1.Y9UCUD Arachis hypogaea HOM05D006559 ORTHO05D008867 5.0e-216 755.0 671 58.6
Migut.G00055 Erythranthe guttata HOM05D006559 ORTHO05D008867 8.6e-216 754.2 677 57.5
Psat4g024080 Pisum sativum HOM05D006559 ORTHO05D008867 8.6e-216 754.2 670 59.4
AUR62039288 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.5e-215 753.4 694 56.6
SalBow8G4902 Salvia bowleyana HOM05D006559 ORTHO05D008867 2.5e-215 752.7 673 58.5
Sopen01g026050 Solanum pennellii HOM05D006559 ORTHO05D008867 2.5e-215 752.7 672 57.4
Solyc01g059920.4 Solanum lycopersicum HOM05D006559 ORTHO05D008867 7.2e-215 751.1 672 57.6
arahy.Tifrunner.gnm1.ann1.57X5SD Arachis hypogaea HOM05D006559 ORTHO05D008867 1.6e-214 750.0 670 57.9
Glyma.07G240200 Glycine max HOM05D006559 ORTHO05D008867 3.6e-214 748.8 671 59.2
Phvul.003G113900 Phaseolus vulgaris HOM05D006559 ORTHO05D008867 6.1e-214 748.0 673 58.8
Peaxi162Scf00228g00226 Petunia axillaris HOM05D006559 ORTHO05D008867 8.0e-214 747.7 671 58.6
Glyma.17G033200 Glycine max HOM05D006559 ORTHO05D008867 3.0e-213 745.7 682 58.7
Cc03_g00890 Coffea canephora HOM05D006559 ORTHO05D008867 5.2e-213 745.0 667 59.1
MBI18_g32021_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D008867 7.5e-212 741.1 677 58.1
PGSC0003DMG400021843 Solanum tuberosum HOM05D006559 ORTHO05D008867 1.3e-211 740.3 672 57.3
PSO210G1317 Papaver somniferum HOM05D006559 ORTHO05D008867 4.9e-211 738.4 677 57.3
ECA246G2012 Erigeron canadensis HOM05D006559 ORTHO05D008867 2.4e-210 736.1 678 57.2
Lsat_1_v5_gn_6_116281 Lactuca sativa HOM05D006559 ORTHO05D008867 4.1e-210 735.3 680 57.8
MSTRG.3859 Avicennia marina HOM05D006559 ORTHO05D008867 2.7e-209 732.6 677 56.1
Nitab4.5_0011895g0010 Nicotiana tabacum HOM05D006559 ORTHO05D008867 3.5e-209 732.3 668 57.5
THA.LOC104820440 Tarenaya hassleriana HOM05D006559 ORTHO05D008867 4.5e-209 731.9 657 58.0
AUR62016199 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.7e-208 729.9 755 51.4
SGA_v2.0_scaffold18G08402 Striga asiatica HOM05D006559 ORTHO05D008867 2.9e-208 729.2 680 56.6
Oeu032013.1 Olea europaea HOM05D006559 ORTHO05D008867 2.5e-207 726.1 674 56.8
Aqoxy2G02735 Aquilegia oxysepala HOM05D006559 ORTHO05D008867 4.3e-207 725.3 676 56.7
Sp3g15250 Schrenkiella parvula HOM05D006559 ORTHO05D008867 2.3e-205 719.5 688 54.9
AT3G17030 Arabidopsis thaliana HOM05D006559 ORTHO05D008867 1.5e-204 716.8 685 54.9
Carub.0003s1678 Capsella rubella HOM05D006559 ORTHO05D008867 6.4e-203 711.4 693 54.3
Thhalv10020210m.g Eutrema salsugineum HOM05D006559 ORTHO05D008867 8.3e-203 711.1 690 54.8
TPR.G5276 Trifolium pratense HOM05D006559 ORTHO05D008867 1.4e-202 710.3 705 54.9
AL3G30010 Arabidopsis lyrata HOM05D006559 ORTHO05D008867 7.0e-202 708.0 688 54.7
Aa31LG8G4060 Aethionema arabicum HOM05D006559 ORTHO05D008867 5.6e-199 698.4 691 53.5
A01p37300 Brassica napus HOM05D006559 ORTHO05D008867 5.2e-197 691.8 691 53.8
EL10Ac3g05493 Beta vulgaris HOM05D006559 ORTHO05D008867 1.2e-196 690.6 707 52.5
BraA01t03788Z Brassica rapa HOM05D006559 ORTHO05D008867 1.2e-196 690.6 691 54.0
BcaC09g48654 Brassica carinata HOM05D006559 ORTHO05D008867 2.0e-196 689.9 688 53.8
BolC1t04694H Brassica oleracea HOM05D006559 ORTHO05D008867 7.5e-196 688.0 689 54.0
C01p47240 Brassica napus HOM05D006559 ORTHO05D008867 1.9e-194 683.3 689 53.7
Duzib151G0228 Durio zibethinus HOM05D006559 ORTHO05D008867 5.1e-192 675.2 666 54.2
Lj6A690G72 Lonicera japonica HOM05D006559 ORTHO05D008867 1.9e-191 673.3 537 64.1
COL.COLO4_34624 Corchorus olitorius HOM05D006559 ORTHO05D008867 3.4e-188 662.5 679 52.6
CiPaw.01G113700 Carya illinoinensis HOM05D006559 ORTHO05D008867 9.9e-188 661.0 528 65.3
Ah.13g071910 Amaranthus hybridus HOM05D006559 ORTHO05D008867 1.6e-185 653.7 670 51.9
ATR0796G144 Amborella trichopoda HOM05D006559 ORTHO05D008867 2.3e-184 649.8 670 51.5
Atru.chr4.3010 Acer truncatum HOM05D006559 ORTHO05D008867 3.0e-184 649.4 690 52.9
HanXRQChr08g0236161 Helianthus annuus HOM05D006559 ORTHO05D008867 1.2e-180 637.5 675 53.5
Actinidia40373 Actinidia chinensis HOM05D006559 ORTHO05D008867 5.1e-176 622.1 474 65.8
SHI00146 Sapria himalayana HOM05D006559 ORTHO05D008867 6.9e-173 611.7 679 50.2
Os03g0832500 Oryza sativa ssp. japonica HOM05D006559 ORTHO05D008867 8.4e-171 604.7 686 49.9
Nitab4.5_0000169g0190 Nicotiana tabacum HOM05D006559 ORTHO05D008867 1.4e-170 604.0 535 59.3
Zm00001eb063450 Zea mays HOM05D006559 ORTHO05D008867 9.0e-165 584.7 669 50.1
SEGI_33199 Sequoiadendron giganteum HOM05D006559 ORTHO05D008867 1.3e-158 564.3 679 46.1
Hma1.2p1_0078F.1_g039960 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 1.4e-157 560.8 534 55.8
ClCG00G004240 Citrullus lanatus HOM05D006559 ORTHO05D008867 7.1e-154 548.5 527 56.7
unitig_32.g11851 Utricularia gibba HOM05D006559 ORTHO05D008867 2.5e-143 513.5 646 45.8
RcHm_v2.0_Chr4g0424931 Rosa chinensis HOM05D006559 ORTHO05D008867 2.2e-131 473.8 409 64.5
HPP92_015242 Vanilla planifolia HOM05D006559 ORTHO05D008867 5.0e-131 472.6 675 42.4
CARHR092280 Cardamine hirsuta HOM05D006559 ORTHO05D008867 5.0e-123 446.0 404 57.4
Mapoly0086s0053 Marchantia polymorpha HOM05D006559 ORTHO05D008867 4.0e-120 436.4 707 37.9
AagrBONN_evm.TU.Sc2ySwM_344.4908 Anthoceros agrestis HOM05D006559 ORTHO05D008867 4.4e-103 379.8 682 37.1
TAR365G1053 Trochodendron aralioides HOM05D006559 ORTHO05D008867 1.7e-83 314.7 252 62.3
SMO116G0303 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 5.6e-74 283.1 508 36.6
SMO239G0200 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 8.9e-72 275.8 563 34.1
TPR.G16835 Trifolium pratense HOM05D006559 ORTHO05D008867 4.3e-58 230.3 402 39.6
RcHm_v2.0_Chr4g0425081 Rosa chinensis HOM05D006559 ORTHO05D008867 2.4e-56 224.6 116 90.5
AUR62035935 Chenopodium quinoa HOM05D006559 ORTHO05D008867 7.9e-44 183.0 239 44.4
AUR62044438 Chenopodium quinoa HOM05D006559 ORTHO05D008867 5.1e-43 180.3 196 48.0
Hma1.2p1_0078F.1_g039980 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 5.3e-40 170.2 131 62.6
AUR62038912 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.0e-35 156.0 251 37.1
SMO195G0016 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 1.5e-31 142.1 424 29.2
Actinidia27128 Actinidia chinensis HOM05D006559 ORTHO05D008867 1.9e-29 135.2 104 64.4
RcHm_v2.0_Chr4g0425061 Rosa chinensis HOM05D006559 ORTHO05D008867 4.2e-29 134.0 123 60.2
Cc03_g00880 Coffea canephora HOM05D006559 ORTHO05D008867 4.5e-23 114.0 86 64.0
MBI14_g17950_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D241410 2.2e-22 111.7 157 45.2
Lj6A690T73 Lonicera japonica HOM05D006559 ORTHO05D008867 1.1e-21 109.4 92 54.3
RcHm_v2.0_Chr4g0425071 Rosa chinensis HOM05D006559 ORTHO05D343184 7.9e-20 103.2 70 77.1
RcHm_v2.0_Chr3g0458131 Rosa chinensis HOM05D006559 ORTHO05D050582 3.0e-19 101.3 76 72.4
BcaB04g20870 Brassica carinata HOM05D006559 ORTHO05D019951 4.7e-12 77.4 74 55.4
BcaC01g05501 Brassica carinata HOM05D006559 ORTHO05D019951 9.7e-10 69.7 76 52.6
Potri.008G105850 Populus trichocarpa HOM05D006559 ORTHO05D050582 2.2e-09 68.6 70 51.4


User provided reference genes

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