Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G1967 Fragaria x ananassa HOM05D007686 ORTHO05D009709 3.7e-105 386.7 694 100.0
RcHm_v2.0_Chr4g0432731 Rosa chinensis HOM05D007686 ORTHO05D009709 2.4e-35 154.8 81 90.1
FAN22G1730 Fragaria x ananassa HOM05D007686 ORTHO05D009709 8.4e-33 146.4 100 73.0
Prupe.1G242700 Prunus persica HOM05D007686 ORTHO05D009709 2.8e-28 131.3 76 78.9
TWI18G1075 Tripterygium wilfordii HOM05D007686 ORTHO05D009709 3.1e-27 127.9 77 74.0
CANSAT01G2773 Cannabis sativa HOM05D007686 ORTHO05D009709 4.0e-27 127.5 76 76.3
arahy.Tifrunner.gnm1.ann1.BXJH78 Arachis hypogaea HOM05D007686 ORTHO05D009709 5.3e-27 127.1 84 71.4
Dinv14741 Davidia involucrata HOM05D007686 ORTHO05D009709 1.5e-26 125.6 79 74.7
Gohir.A04G137000 Gossypium hirsutum HOM05D007686 ORTHO05D009709 2.6e-26 124.8 81 70.4
Lalb_Chr07g0185471 Lupinus albus HOM05D007686 ORTHO05D009709 4.5e-26 124.0 87 67.8
CiPaw.05G168000 Carya illinoinensis HOM05D007686 ORTHO05D009709 9.9e-26 122.9 91 64.8
PGR119G1810 Punica granatum HOM05D007686 ORTHO05D009709 1.3e-25 122.5 77 72.7
Gohir.D04G180200 Gossypium hirsutum HOM05D007686 ORTHO05D009709 1.7e-25 122.1 81 69.1
Phvul.002G258900 Phaseolus vulgaris HOM05D007686 ORTHO05D009709 4.9e-25 120.6 86 66.3
Cpa.g.sc33.48 Carica papaya HOM05D007686 ORTHO05D009709 8.4e-25 119.8 79 72.2
MD13G1103100 Malus domestica HOM05D007686 ORTHO05D009709 8.4e-25 119.8 67 83.6
Potri.008G185000 Populus trichocarpa HOM05D007686 ORTHO05D009709 1.1e-24 119.4 76 71.1
Ciclev10031251m.g Citrus clementina HOM05D007686 ORTHO05D009709 1.9e-24 118.6 76 71.1
TWI36G0128 Tripterygium wilfordii HOM05D007686 ORTHO05D009709 5.4e-24 117.1 79 67.1
Sabra08G0140000 Salix brachista HOM05D007686 ORTHO05D009709 9.3e-24 116.3 76 69.7
TPR.G6255 Trifolium pratense HOM05D007686 ORTHO05D009709 2.1e-23 115.2 92 62.0
Manes.13G022000 Manihot esculenta HOM05D007686 ORTHO05D009709 4.6e-23 114.0 79 64.6
Thecc.02G263700 Theobroma cacao HOM05D007686 ORTHO05D009709 4.6e-23 114.0 81 65.4
Manes.13G021400 Manihot esculenta HOM05D007686 ORTHO05D009709 1.0e-22 112.8 79 64.6
Glyma.08G131100 Glycine max HOM05D007686 ORTHO05D009709 2.3e-22 111.7 82 63.4
HanXRQChr08g0208401 Helianthus annuus HOM05D007686 ORTHO05D009709 5.1e-22 110.5 77 68.8
Medtr8g089700 Medicago truncatula HOM05D007686 ORTHO05D009709 5.1e-22 110.5 82 63.4
Psat7g058760 Pisum sativum HOM05D007686 ORTHO05D009709 6.7e-22 110.2 82 62.2
Glyma.05G173932 Glycine max HOM05D007686 ORTHO05D009709 1.1e-21 109.4 82 62.2
SGA_v2.0_scaffold100G29576 Striga asiatica HOM05D007686 ORTHO05D009709 1.9e-21 108.6 79 59.5
CsaV3_5G030960 Cucumis sativus L. HOM05D007686 ORTHO05D009709 2.5e-21 108.2 80 66.2
Lj4g0016926 Lotus japonicus HOM05D007686 ORTHO05D009709 4.3e-21 107.5 85 61.2
ECA233G6157 Erigeron canadensis HOM05D007686 ORTHO05D009709 9.6e-21 106.3 81 64.2
Migut.K00622 Erythranthe guttata HOM05D007686 ORTHO05D009709 2.8e-20 104.8 79 60.8
Ca_17785_v3 Cicer arietinum L. HOM05D007686 ORTHO05D009709 4.8e-20 104.0 82 61.0
CSS0050065 Camellia sinensis var. sinensis HOM05D007686 ORTHO05D009709 1.4e-19 102.4 61 75.4
ClCG05G025900 Citrullus lanatus HOM05D007686 ORTHO05D009709 3.1e-19 101.3 76 64.5
DCAR_031167 Daucus carota HOM05D002540 ORTHO05D002672 3.1e-19 101.3 70 71.4
Sed0013465 Sechium edule HOM05D007686 ORTHO05D009709 3.1e-19 101.3 73 65.8
Nitab4.5_0001839g0010 Nicotiana tabacum HOM05D007686 ORTHO05D009709 5.3e-19 100.5 62 72.6
Nitab4.5_0000067g0230 Nicotiana tabacum HOM05D007686 ORTHO05D009709 6.9e-19 100.1 62 72.6
MD16G1103300 Malus domestica HOM05D007686 ORTHO05D009709 1.2e-18 99.4 58 81.0
Eucgr.H02473 Eucalyptus grandis HOM05D007686 ORTHO05D009709 1.5e-18 99.0 72 63.9
Solyc06g008190.1 Solanum lycopersicum HOM05D007686 ORTHO05D009709 1.5e-18 99.0 66 68.2
Sopen06g003050 Solanum pennellii HOM05D007686 ORTHO05D009709 1.5e-18 99.0 66 68.2
FvH4_4g25420 Fragaria vesca HOM05D007686 ORTHO05D009709 4.5e-18 97.4 47 97.9
MBI17_g12881_MAGBIO Magnolia biondii HOM05D007686 ORTHO05D009709 4.5e-18 97.4 72 61.1
Gorai.012G173300 Gossypium raimondii HOM05D007686 ORTHO05D009709 7.6e-18 96.7 67 67.2
MSTRG.555 Avicennia marina HOM05D007686 ORTHO05D009709 1.3e-17 95.9 65 67.7
Lj3P1060G37 Lonicera japonica HOM05D007686 ORTHO05D009709 2.9e-17 94.7 65 64.6
Hma1.2p1_0815F.1_g222720 Hydrangea macrophylla HOM05D007686 ORTHO05D009709 8.4e-17 93.2 59 71.2
Rhsim12G0039200 Rhododendron simsii HOM05D007686 ORTHO05D009709 8.4e-17 93.2 58 74.1
CDE05G1633 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 2.5e-16 91.7 73 56.2
AUR62011787 Chenopodium quinoa HOM05D007686 ORTHO05D009709 5.5e-16 90.5 63 63.5
SHI17831 Sapria himalayana HOM05D007686 ORTHO05D009709 5.5e-16 90.5 76 60.5
COL.COLO4_23488 Corchorus olitorius HOM05D007686 ORTHO05D009709 2.1e-15 88.6 46 82.6
GSVIVG01000559001 Vitis vinifera HOM05D007686 ORTHO05D009709 3.5e-15 87.8 58 69.0
QL03p056833 Quercus lobata HOM05D007686 ORTHO05D009709 4.6e-15 87.4 53 73.6
QL93p1848_0021 Quercus lobata HOM05D007686 ORTHO05D009709 4.6e-15 87.4 53 73.6
FAN17G3048 Fragaria x ananassa HOM05D007686 ORTHO05D009709 7.9e-15 86.7 67 65.7
Atru.chr11.2166 Acer truncatum HOM05D007686 ORTHO05D009709 1.5e-13 82.4 49 77.6
EL10Ac7g16785 Beta vulgaris HOM05D007686 ORTHO05D009709 1.3e-12 79.3 57 63.2
Os07g0688100 Oryza sativa ssp. japonica HOM05D007686 ORTHO05D009709 1.6e-12 79.0 73 49.3
Zm00001eb331140 Zea mays HOM05D007686 ORTHO05D009709 1.6e-12 79.0 73 52.1
Gohir.A03G132900 Gossypium hirsutum HOM05D007686 ORTHO05D009709 3.7e-12 77.8 46 76.1
Aa31LG1G1760 Aethionema arabicum HOM05D007686 ORTHO05D009709 4.0e-11 74.3 51 66.7
Sp1g11590 Schrenkiella parvula HOM05D007686 ORTHO05D009709 4.0e-11 74.3 52 69.2
BcaC05g25091 Brassica carinata HOM05D007686 ORTHO05D009709 1.5e-10 72.4 50 70.0
A06p08670 Brassica napus HOM05D002540 ORTHO05D002672 1.5e-10 72.4 50 70.0
BolC5t29774H Brassica oleracea HOM05D007686 ORTHO05D009709 1.5e-10 72.4 50 70.0
BraA06t24064Z Brassica rapa HOM05D007686 ORTHO05D009709 1.5e-10 72.4 50 70.0
PSO724G0460 Papaver somniferum HOM05D007686 ORTHO05D009709 1.5e-10 72.4 53 64.2
AT1G13040 Arabidopsis thaliana HOM05D007686 ORTHO05D009709 2.0e-10 72.0 52 67.3
AL1G24690 Arabidopsis lyrata HOM05D007686 ORTHO05D009709 2.6e-10 71.6 52 67.3
C05p10280 Brassica napus HOM05D002540 ORTHO05D002672 3.4e-10 71.2 50 68.0
Sc06g0009620 Simmondsia chinensis HOM05D007686 ORTHO05D009709 3.4e-10 71.2 53 62.3
Carub.0001s1279 Capsella rubella HOM05D007686 ORTHO05D009709 4.5e-10 70.9 52 67.3
Aqoxy2G03020 Aquilegia oxysepala HOM05D007686 ORTHO05D009709 7.6e-10 70.1 48 68.8
PSO135G0590 Papaver somniferum HOM05D007686 ORTHO05D009709 7.6e-10 70.1 52 63.5
THA.LOC104805275 Tarenaya hassleriana HOM05D007686 ORTHO05D009709 1.0e-09 69.7 49 69.4
CARHR013370 Cardamine hirsuta HOM05D007686 ORTHO05D009709 1.3e-09 69.3 50 68.0
PGSC0003DMG400014696 Solanum tuberosum HOM05D007686 ORTHO05D009709 2.2e-09 68.6 43 72.1
C08p15790 Brassica napus HOM05D002540 ORTHO05D002672 6.5e-09 67.0 50 66.0
BolC8t49205H Brassica oleracea HOM05D002540 ORTHO05D002672 6.5e-09 67.0 50 66.0
Lsat_1_v5_gn_8_152860 Lactuca sativa HOM05D007686 ORTHO05D009709 6.5e-09 67.0 46 65.2
Thhalv10007381m.g Eutrema salsugineum HOM05D007686 ORTHO05D009709 8.4e-09 66.6 50 64.0
A08p32500 Brassica napus HOM05D007686 ORTHO05D009709 1.1e-08 66.2 50 66.0
BraA08t35174Z Brassica rapa HOM05D007686 ORTHO05D009709 1.1e-08 66.2 50 66.0
TAR383G0079 Trochodendron aralioides HOM05D007686 ORTHO05D009709 1.1e-08 66.2 46 65.2
Oeu049173.1 Olea europaea HOM05D007686 ORTHO05D009709 2.5e-08 65.1 45 57.8
HPP92_012781 Vanilla planifolia HOM05D007686 ORTHO05D009709 9.3e-08 63.2 41 70.7
Gorai.005G176400 Gossypium raimondii HOM05D007686 ORTHO05D009709 1.2e-07 62.8 53 56.6
CAN.G941.2 Capsicum annuum HOM05D007686 ORTHO05D009709 2.7e-07 61.6 168 29.2


User provided reference genes

Program Settings