Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G1957 Fragaria x ananassa HOM05D002542 ORTHO05D012505 3.9e-48 194.5 100 100.0
FAN05G1732 Fragaria x ananassa HOM05D002542 ORTHO05D012505 2.1e-46 188.7 100 97.0
FAN14G4235 Fragaria x ananassa HOM05D002542 ORTHO05D012505 2.1e-46 188.7 100 97.0
FAN21G0987 Fragaria x ananassa HOM05D002542 ORTHO05D012505 6.2e-46 187.2 100 96.0
FAN09G1263 Fragaria x ananassa HOM05D002542 ORTHO05D012505 5.1e-40 167.5 127 74.0
FAN18G1778 Fragaria x ananassa HOM05D002542 ORTHO05D012505 6.4e-35 150.6 78 97.4
FAN15G0815 Fragaria x ananassa HOM05D002542 ORTHO05D012505 1.2e-33 146.4 100 82.0
FAN07G1065 Fragaria x ananassa HOM05D002542 ORTHO05D012505 1.6e-33 146.0 81 93.8
FAN28G1798 Fragaria x ananassa HOM05D002542 ORTHO05D012505 3.6e-30 134.8 124 66.1
FAN25G0160 Fragaria x ananassa HOM05D002542 ORTHO05D012505 1.1e-29 133.3 68 98.5
FAN27G1131 Fragaria x ananassa HOM05D002542 ORTHO05D012505 9.0e-29 130.2 71 91.5
FAN19G2349 Fragaria x ananassa HOM05D002542 ORTHO05D012505 1.2e-28 129.8 68 97.1
FvH4_3g43310 Fragaria vesca HOM05D002542 ORTHO05D005078 6.4e-27 124.0 68 92.6
FAN11G0849 Fragaria x ananassa HOM05D002542 ORTHO05D005078 6.4e-27 124.0 68 92.6
FAN25G0516 Fragaria x ananassa HOM05D002542 ORTHO05D005078 8.4e-27 123.6 68 91.2
RcHm_v2.0_Chr5g0077371 Rosa chinensis HOM05D002542 ORTHO05D005078 1.4e-26 122.9 68 91.2
FAN16G1676 Fragaria x ananassa HOM05D002542 ORTHO05D005078 1.9e-26 122.5 68 91.2
FAN21G1265 Fragaria x ananassa HOM05D002542 ORTHO05D005078 7.1e-26 120.6 68 91.2
MD11G1027800 Malus domestica HOM05D002542 ORTHO05D005078 2.3e-24 115.5 68 85.3
CANSAT56G4386 Cannabis sativa HOM05D002542 ORTHO05D005078 5.1e-24 114.4 68 83.8
FAN15G3150 Fragaria x ananassa HOM05D002542 ORTHO05D012505 5.1e-24 114.4 60 96.7
Prupe.6G021800 Prunus persica HOM05D002542 ORTHO05D005078 5.1e-24 114.4 68 83.8
FvH4_2g07530 Fragaria vesca HOM05D002542 ORTHO05D012505 9.6e-23 110.2 68 83.8
ClCG02G023450 Citrullus lanatus HOM05D002542 ORTHO05D005078 1.8e-21 105.9 68 77.9
MELO3C014617.2 Cucumis melo HOM05D002542 ORTHO05D005078 5.3e-21 104.4 68 77.9
CsaV3_4G024050 Cucumis sativus L. HOM05D002542 ORTHO05D005078 5.3e-21 104.4 68 77.9
QL01p005723 Quercus lobata HOM05D002542 ORTHO05D005078 3.4e-20 101.7 72 69.4
Sed0011721 Sechium edule HOM05D002542 ORTHO05D005078 4.5e-20 101.3 68 73.5
TAR623G0073 Trochodendron aralioides HOM05D002542 ORTHO05D005078 5.8e-20 100.9 68 70.6
FvH4_5g11310 Fragaria vesca HOM05D002542 ORTHO05D012505 7.6e-20 100.5 61 86.9
TAR623G0292 Trochodendron aralioides HOM05D002542 ORTHO05D005078 1.7e-19 99.4 68 69.1
TAR636G0047 Trochodendron aralioides HOM05D002542 ORTHO05D005078 1.7e-19 99.4 68 70.6
Eucgr.J00798 Eucalyptus grandis HOM05D002542 ORTHO05D005078 2.2e-19 99.0 68 69.1
Aqoxy1G00203 Aquilegia oxysepala HOM05D002542 ORTHO05D005078 4.9e-19 97.8 68 69.1
Dinv08045 Davidia involucrata HOM05D002542 ORTHO05D005078 6.4e-19 97.4 68 72.1
Nn7g36091 Nelumbo nucifera HOM05D002542 ORTHO05D005078 8.4e-19 97.1 67 68.7
Oeu055810.1 Olea europaea HOM05D002542 ORTHO05D005078 8.4e-19 97.1 67 73.1
Oeu055812.1 Olea europaea HOM05D002542 ORTHO05D005078 8.4e-19 97.1 67 73.1
Actinidia16301 Actinidia chinensis HOM05D002542 ORTHO05D005078 1.1e-18 96.7 69 71.0
Nn2g15512 Nelumbo nucifera HOM05D002542 ORTHO05D005078 1.9e-18 95.9 68 69.1
TAR369G0468 Trochodendron aralioides HOM05D002542 ORTHO05D005078 1.9e-18 95.9 68 67.6
Dinv36293 Davidia involucrata HOM05D002542 ORTHO05D005078 3.2e-18 95.1 67 70.1
Hma1.2p1_0728F.1_g209330 Hydrangea macrophylla HOM05D002542 ORTHO05D005078 5.4e-18 94.4 72 65.3
MBI01_g36438_MAGBIO Magnolia biondii HOM05D002542 ORTHO05D005078 1.2e-17 93.2 65 70.8
Peaxi162Scf00839g00235 Petunia axillaris HOM05D002542 ORTHO05D005078 1.6e-17 92.8 69 69.6
PGR119G0847 Punica granatum HOM05D002542 ORTHO05D005078 1.6e-17 92.8 83 63.9
SalBow4G1692 Salvia bowleyana HOM05D002542 ORTHO05D005078 1.6e-17 92.8 67 71.6
SalBow4G1723 Salvia bowleyana HOM05D002542 ORTHO05D005078 1.6e-17 92.8 67 71.6
SGA_v2.0_scaffold3G01539 Striga asiatica HOM05D002542 ORTHO05D005078 1.6e-17 92.8 67 68.7
Thecc.09G226200 Theobroma cacao HOM05D002542 ORTHO05D005078 1.6e-17 92.8 74 66.2
Gohir.A09G115100 Gossypium hirsutum HOM05D002542 ORTHO05D005078 2.7e-17 92.0 70 64.3
Gohir.D09G111700 Gossypium hirsutum HOM05D002542 ORTHO05D005078 2.7e-17 92.0 70 64.3
Gorai.006G129500 Gossypium raimondii HOM05D002542 ORTHO05D005078 2.7e-17 92.0 70 64.3
Atru.chr3.2552 Acer truncatum HOM05D002542 ORTHO05D005078 4.6e-17 91.3 74 63.5
MSTRG.17576 Avicennia marina HOM05D002542 ORTHO05D005078 4.6e-17 91.3 67 67.2
Actinidia06880 Actinidia chinensis HOM05D002542 ORTHO05D005078 6.0e-17 90.9 69 66.7
arahy.Tifrunner.gnm1.ann1.SMM6ZV Arachis hypogaea HOM05D002542 ORTHO05D005078 6.0e-17 90.9 75 65.3
Duzib168G0207 Durio zibethinus HOM05D002542 ORTHO05D005078 6.0e-17 90.9 70 65.7
Duzib170G1079 Durio zibethinus HOM05D002542 ORTHO05D005078 6.0e-17 90.9 70 64.3
Lalb_Chr14g0372211 Lupinus albus HOM05D002542 ORTHO05D005078 6.0e-17 90.9 80 61.2
arahy.Tifrunner.gnm1.ann1.EPQ3BP Arachis hypogaea HOM05D002542 ORTHO05D005078 7.9e-17 90.5 75 65.3
Psat5g288320 Pisum sativum HOM05D002542 ORTHO05D005078 7.9e-17 90.5 72 63.9
COL.COLO4_24828 Corchorus olitorius HOM05D002542 ORTHO05D005078 1.0e-16 90.1 74 63.5
Migut.N02300 Erythranthe guttata HOM05D002542 ORTHO05D005078 1.3e-16 89.7 67 62.7
FAN01G1158 Fragaria x ananassa HOM05D002542 ORTHO05D012505 1.3e-16 89.7 47 95.7
FAN22G1401 Fragaria x ananassa HOM05D002542 ORTHO05D012505 1.3e-16 89.7 47 95.7
FAN27G1763 Fragaria x ananassa HOM05D002542 ORTHO05D012505 1.3e-16 89.7 47 95.7
VMungo1127G1966 Vigna mungo HOM05D002542 ORTHO05D005078 1.3e-16 89.7 72 66.7
Duzib150G1060 Durio zibethinus HOM05D002542 ORTHO05D005078 1.8e-16 89.4 70 65.7
Nitab4.5_0002278g0060 Nicotiana tabacum HOM05D002542 ORTHO05D005078 1.8e-16 89.4 68 67.6
Ca_20579_v3 Cicer arietinum L. HOM05D002542 ORTHO05D005078 2.3e-16 89.0 72 66.7
Manes.06G167900 Manihot esculenta HOM05D002542 ORTHO05D005078 3.0e-16 88.6 81 55.6
Phvul.011G057300 Phaseolus vulgaris HOM05D002542 ORTHO05D005078 3.0e-16 88.6 72 65.3
THA.LOC104799095 Tarenaya hassleriana HOM05D002542 ORTHO05D005078 3.0e-16 88.6 71 64.8
ECA233G4099 Erigeron canadensis HOM05D002542 ORTHO05D005078 3.9e-16 88.2 70 61.4
FAN20G2271 Fragaria x ananassa HOM05D002542 ORTHO05D012505 3.9e-16 88.2 47 93.6
Lj3g0023719 Lotus japonicus HOM05D002542 ORTHO05D005078 3.9e-16 88.2 72 66.7
Medtr2g098340 Medicago truncatula HOM05D002542 ORTHO05D005078 3.9e-16 88.2 72 63.9
CSS0032394 Camellia sinensis var. sinensis HOM05D002542 ORTHO05D005078 5.1e-16 87.8 75 64.0
Gohir.A07G125700 Gossypium hirsutum HOM05D002542 ORTHO05D005078 5.1e-16 87.8 70 61.4
Lsat_1_v5_gn_6_48640 Lactuca sativa HOM05D002542 ORTHO05D005078 5.1e-16 87.8 67 62.7
Nitab4.5_0000175g0060 Nicotiana tabacum HOM05D002542 ORTHO05D005078 5.1e-16 87.8 68 66.2
Gohir.D07G129901 Gossypium hirsutum HOM05D002542 ORTHO05D005078 6.7e-16 87.4 70 60.0
Gorai.001G140400 Gossypium raimondii HOM05D002542 ORTHO05D005078 6.7e-16 87.4 70 60.0
HanXRQChr13g0404001 Helianthus annuus HOM05D002542 ORTHO05D005078 6.7e-16 87.4 65 66.2
AL6G46900 Arabidopsis lyrata HOM05D002542 ORTHO05D005078 8.7e-16 87.0 71 62.0
AT4G12070 Arabidopsis thaliana HOM05D002542 ORTHO05D005078 8.7e-16 87.0 71 62.0
CARHR254160 Cardamine hirsuta HOM05D002542 ORTHO05D005078 8.7e-16 87.0 71 62.0
CiPaw.14G122700 Carya illinoinensis HOM05D002542 ORTHO05D005078 1.1e-15 86.7 78 56.4
Carub.0006s3119 Capsella rubella HOM05D002542 ORTHO05D005078 1.5e-15 86.3 71 60.6
Glyma.11G131000 Glycine max HOM05D002542 ORTHO05D005078 1.5e-15 86.3 72 63.9
DCAR_002044 Daucus carota HOM05D002542 ORTHO05D005078 1.9e-15 85.9 67 65.7
Migut.D00566 Erythranthe guttata HOM05D002542 ORTHO05D005078 1.9e-15 85.9 70 64.3
PSO339G0387 Papaver somniferum HOM05D002542 ORTHO05D005078 1.9e-15 85.9 70 60.0
PSO384G3896 Papaver somniferum HOM05D002542 ORTHO05D005078 1.9e-15 85.9 70 60.0
Potri.001G017000 Populus trichocarpa HOM05D002542 ORTHO05D005078 1.9e-15 85.9 73 60.3
TPR.G13667 Trifolium pratense HOM05D002542 ORTHO05D005078 1.9e-15 85.9 71 63.4
Cpa.g.sc84.91 Carica papaya HOM05D002542 ORTHO05D005078 2.5e-15 85.5 72 61.1
Cfa009716 Carpinus fangiana HOM05D002542 ORTHO05D005078 2.5e-15 85.5 78 60.3
Glyma.12G055300 Glycine max HOM05D002542 ORTHO05D005078 2.5e-15 85.5 72 63.9
Medtr4g065980 Medicago truncatula HOM05D002542 ORTHO05D005078 2.5e-15 85.5 73 60.3
Solyc11g056620.3 Solanum lycopersicum HOM05D002542 ORTHO05D005078 2.5e-15 85.5 71 69.0
Sopen11g023360 Solanum pennellii HOM05D002542 ORTHO05D005078 2.5e-15 85.5 71 69.0
Aa31LG9G10410 Aethionema arabicum HOM05D002542 ORTHO05D005078 4.3e-15 84.7 71 60.6
CiPaw.13G164700 Carya illinoinensis HOM05D002542 ORTHO05D005078 5.6e-15 84.3 78 57.7
Ciclev10015048m.g Citrus clementina HOM05D002542 ORTHO05D005078 5.6e-15 84.3 75 61.3
Lj3g0008300 Lotus japonicus HOM05D002542 ORTHO05D005078 5.6e-15 84.3 72 65.3
TPR.G40863 Trifolium pratense HOM05D002542 ORTHO05D005078 5.6e-15 84.3 71 59.2
BcaB05g23771 Brassica carinata HOM05D002542 ORTHO05D005078 7.4e-15 84.0 71 60.6
BcaC03g16313 Brassica carinata HOM05D002542 ORTHO05D005078 7.4e-15 84.0 71 60.6
A02p25930 Brassica napus HOM05D002542 ORTHO05D005078 7.4e-15 84.0 71 60.6
C02p41260 Brassica napus HOM05D002542 ORTHO05D005078 7.4e-15 84.0 71 60.6
BolC2t10148H Brassica oleracea HOM05D002542 ORTHO05D005078 7.4e-15 84.0 71 60.6
BraA02t07588Z Brassica rapa HOM05D002542 ORTHO05D005078 7.4e-15 84.0 71 60.6
Thhalv10028621m.g Eutrema salsugineum HOM05D002542 ORTHO05D005078 9.6e-15 83.6 71 59.2
Sp6g05430 Schrenkiella parvula HOM05D002542 ORTHO05D005078 9.6e-15 83.6 71 59.2
FAN11G1190 Fragaria x ananassa HOM05D002542 ORTHO05D012505 1.3e-14 83.2 45 93.3
FAN28G1120 Fragaria x ananassa HOM05D002542 ORTHO05D012505 1.6e-14 82.8 47 89.4
Phvul.L011143 Phaseolus vulgaris HOM05D002542 ORTHO05D005078 1.6e-14 82.8 71 62.0
TWI32G0526 Tripterygium wilfordii HOM05D002542 ORTHO05D005078 2.1e-14 82.4 71 59.2
VMungo1080G0873 Vigna mungo HOM05D002542 ORTHO05D005078 2.1e-14 82.4 71 62.0
BcaC04g21201 Brassica carinata HOM05D002542 ORTHO05D005078 2.8e-14 82.0 71 57.7
C09p34380 Brassica napus HOM05D002542 ORTHO05D005078 2.8e-14 82.0 71 57.7
BolC9t56280H Brassica oleracea HOM05D002542 ORTHO05D005078 2.8e-14 82.0 71 57.7
BraA09t38276Z Brassica rapa HOM05D002542 ORTHO05D005078 2.8e-14 82.0 71 57.7
DCAR_029941 Daucus carota HOM05D002542 ORTHO05D005078 3.7e-14 81.6 67 58.2
Glyma.13G341900 Glycine max HOM05D002542 ORTHO05D005078 3.7e-14 81.6 71 62.0
Lj2A649G45 Lonicera japonica HOM05D002542 ORTHO05D005078 3.7e-14 81.6 67 62.7
Psat0s3083g0120 Pisum sativum HOM05D002542 ORTHO05D005078 3.7e-14 81.6 71 63.4
BcaB01g01717 Brassica carinata HOM05D002542 ORTHO05D005078 4.8e-14 81.3 71 56.3
arahy.Tifrunner.gnm1.ann1.YJX7RI Arachis hypogaea HOM05D002542 ORTHO05D005078 8.1e-14 80.5 74 54.1
Sabra01G0011900 Salix brachista HOM05D002542 ORTHO05D005078 8.1e-14 80.5 73 57.5
Glyma.15G032400 Glycine max HOM05D002542 ORTHO05D005078 1.1e-13 80.1 71 59.2
Sabra03G0153100 Salix brachista HOM05D002542 ORTHO05D005078 1.1e-13 80.1 77 54.5
A09p27050 Brassica napus HOM05D002542 ORTHO05D005078 6.9e-13 77.4 72 56.9
Lalb_Chr03g0026231 Lupinus albus HOM05D002542 ORTHO05D005078 6.9e-13 77.4 71 60.6
Potri.003G207600 Populus trichocarpa HOM05D002542 ORTHO05D005078 6.9e-13 77.4 77 54.5
TWI34G0903 Tripterygium wilfordii HOM05D002542 ORTHO05D005078 1.2e-12 76.6 71 57.7
DCAR_023758 Daucus carota HOM05D002542 ORTHO05D005078 2.6e-12 75.5 69 59.4
CDE05G2289 Ceratophyllum demersum HOM05D002542 ORTHO05D005078 4.5e-12 74.7 65 53.8
CDE05G1246 Ceratophyllum demersum HOM05D002542 ORTHO05D005078 5.8e-12 74.3 65 53.8
PGR102G1632 Punica granatum HOM05D002542 ORTHO05D005078 7.6e-12 73.9 66 53.0
EL10Ac4g10309 Beta vulgaris HOM05D002542 ORTHO05D005078 1.3e-11 73.2 71 54.9
SEGI_41426 Sequoiadendron giganteum HOM05D002542 ORTHO05D005078 1.3e-11 73.2 73 46.6
unitig_699.g19127 Utricularia gibba HOM05D002542 ORTHO05D005078 6.5e-11 70.9 66 56.1
AUR62019257 Chenopodium quinoa HOM05D002542 ORTHO05D005078 1.1e-10 70.1 71 49.3
AUR62043579 Chenopodium quinoa HOM05D002542 ORTHO05D005078 1.1e-10 70.1 88 42.0
AUR62043684 Chenopodium quinoa HOM05D002542 ORTHO05D005078 1.1e-10 70.1 71 49.3
AUR62000085 Chenopodium quinoa HOM05D002542 ORTHO05D005078 1.9e-10 69.3 71 50.7
CiPaw.14G122500 Carya illinoinensis HOM05D002542 ORTHO05D012505 5.5e-10 67.8 54 55.6
QL08p037542 Quercus lobata HOM05D000328 ORTHO05D000191 5.5e-10 67.8 50 64.0
Ah.06g193550 Amaranthus hybridus HOM05D002542 ORTHO05D005078 7.1e-10 67.4 111 41.4
Rhsim13G0224600 Rhododendron simsii HOM05D002542 ORTHO05D005078 9.3e-10 67.0 69 58.0
ATR0605G168 Amborella trichopoda HOM05D002542 ORTHO05D005078 7.9e-09 63.9 67 46.3
vmacro04178 Vaccinium macrocarpon HOM05D002542 ORTHO05D005078 1.3e-08 63.2 69 56.5
Zm00001eb316700 Zea mays HOM05D002542 ORTHO05D005078 1.5e-07 59.7 75 42.7
Zm00001eb252800 Zea mays HOM05D002542 ORTHO05D005078 4.8e-06 54.7 73 42.5


User provided reference genes

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