Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_4g13580 Fragaria vesca HOM05D005061 ORTHO05D006001 5.6e-73 277.7 162 100.0
FAN12G1864 Fragaria x ananassa HOM05D005061 ORTHO05D006001 5.6e-73 277.7 162 100.0
FAN07G1641 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.0e-58 230.3 162 85.8
FAN17G2161 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.9e-52 209.5 153 84.3
FAN22G2287 Fragaria x ananassa HOM05D005061 ORTHO05D006001 4.6e-51 204.9 162 79.0
RcHm_v2.0_Chr4g0414331 Rosa chinensis HOM05D005061 ORTHO05D006001 2.2e-29 132.9 162 61.1
Prupe.1G159300 Prunus persica HOM05D005061 ORTHO05D006001 1.1e-23 114.0 172 52.9
RcHm_v2.0_Chr4g0414321 Rosa chinensis HOM05D005061 ORTHO05D006001 2.7e-22 109.4 173 50.3
FAN17G0047 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.5e-20 103.6 158 50.6
FvH4_4g13570 Fragaria vesca HOM05D005061 ORTHO05D006001 7.2e-20 101.3 162 49.4
FAN07G0218 Fragaria x ananassa HOM05D005061 ORTHO05D006001 2.1e-19 99.8 162 48.8
FAN22G0582 Fragaria x ananassa HOM05D005061 ORTHO05D006001 4.0e-18 95.5 162 48.1
Lj1g0014719 Lotus japonicus HOM05D005061 ORTHO05D006001 4.0e-18 95.5 157 46.5
Lj1g0023949 Lotus japonicus HOM05D005061 ORTHO05D006001 4.0e-18 95.5 157 46.5
Gohir.D10G140500 Gossypium hirsutum HOM05D005061 ORTHO05D006001 5.2e-18 95.1 161 46.6
Gorai.011G156100 Gossypium raimondii HOM05D005061 ORTHO05D006001 5.2e-18 95.1 161 46.6
COL.COLO4_20183 Corchorus olitorius HOM05D005061 ORTHO05D006001 8.8e-18 94.4 157 46.5
Glyma.08G364400 Glycine max HOM05D005061 ORTHO05D006001 8.8e-18 94.4 165 47.3
MD14G1080700 Malus domestica HOM05D005061 ORTHO05D006001 2.6e-17 92.8 166 45.8
Cpa.g.sc170.49 Carica papaya HOM05D005061 ORTHO05D006001 5.7e-17 91.7 166 45.2
Psat6g003280 Pisum sativum HOM05D005061 ORTHO05D006001 9.8e-17 90.9 164 44.5
TPR.G26387 Trifolium pratense HOM05D005061 ORTHO05D006001 1.7e-16 90.1 157 44.6
TPR.G1371 Trifolium pratense HOM05D005061 ORTHO05D006001 3.7e-16 89.0 157 44.6
TAR624G0493 Trochodendron aralioides HOM05D002455 ORTHO05D006001 3.7e-16 89.0 167 44.9
MD12G1086100 Malus domestica HOM05D005061 ORTHO05D006001 8.3e-16 87.8 166 45.2
CANSAT78G0571 Cannabis sativa HOM05D005061 ORTHO05D006001 1.1e-15 87.4 172 44.2
Lalb_Chr01g0000091 Lupinus albus HOM05D005061 ORTHO05D006001 3.1e-15 85.9 166 41.6
Thhalv10004918m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 5.4e-15 85.1 161 43.5
Aa31LG11G8230 Aethionema arabicum HOM05D005061 ORTHO05D006001 9.1e-15 84.3 156 42.9
AL8G22790 Arabidopsis lyrata HOM05D005061 ORTHO05D006001 9.1e-15 84.3 164 43.3
Medtr1g025570 Medicago truncatula HOM05D005061 ORTHO05D006001 9.1e-15 84.3 153 43.1
Gohir.A10G126200 Gossypium hirsutum HOM05D005061 ORTHO05D006001 1.2e-14 84.0 161 44.1
Glyma.18G297700 Glycine max HOM05D005061 ORTHO05D006001 5.9e-14 81.6 143 45.5
TAR636G2803 Trochodendron aralioides HOM05D005061 ORTHO05D006001 1.0e-13 80.9 158 42.4
BcaNung02589 Brassica carinata HOM05D005061 ORTHO05D006001 1.7e-13 80.1 163 40.5
C07p39760 Brassica napus HOM05D005061 ORTHO05D006001 1.7e-13 80.1 163 40.5
BraA06t26765Z Brassica rapa HOM05D005061 ORTHO05D006001 1.7e-13 80.1 162 40.7
AT5G49210 Arabidopsis thaliana HOM05D005061 ORTHO05D006001 2.9e-13 79.3 159 42.1
Carub.0008s0903 Capsella rubella HOM05D005061 ORTHO05D006001 2.9e-13 79.3 160 42.5
PGR042G2541 Punica granatum HOM05D005061 ORTHO05D006001 2.9e-13 79.3 174 39.7
Cpa.g.sc150.53 Carica papaya HOM05D005061 ORTHO05D006001 8.5e-13 77.8 159 40.3
A06p38500 Brassica napus HOM05D005061 ORTHO05D006001 1.1e-12 77.4 160 40.6
BcaC03g17706 Brassica carinata HOM05D005061 ORTHO05D006001 1.9e-12 76.6 168 39.3
C02p57130 Brassica napus HOM05D005061 ORTHO05D006001 1.9e-12 76.6 168 39.3
Hma1.2p1_0383F.1_g140630 Hydrangea macrophylla HOM05D005061 ORTHO05D006001 1.9e-12 76.6 157 42.0
QL07p041720 Quercus lobata HOM05D005061 ORTHO05D006001 2.5e-12 76.3 177 43.5
Manes.02G208300 Manihot esculenta HOM05D005061 ORTHO05D006001 3.2e-12 75.9 165 41.8
BcaC06g30707 Brassica carinata HOM05D005061 ORTHO05D006001 5.5e-12 75.1 164 40.2
Manes.10G081400 Manihot esculenta HOM05D005061 ORTHO05D006001 7.2e-12 74.7 165 41.2
ECA247G1905 Erigeron canadensis HOM05D005061 ORTHO05D006001 3.6e-11 72.4 155 39.4
CARHR182460 Cardamine hirsuta HOM05D005061 ORTHO05D006001 6.1e-11 71.6 136 41.9
Dinv38211 Davidia involucrata HOM05D005061 ORTHO05D006001 8.0e-11 71.2 164 40.2
HPP92_021062 Vanilla planifolia HOM05D005061 ORTHO05D006001 1.0e-10 70.9 140 42.1
CSS0003459 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 1.4e-10 70.5 174 39.1
SalBow8G4870 Salvia bowleyana HOM05D005061 ORTHO05D006001 3.0e-10 69.3 148 43.2
Lj8A15T45 Lonicera japonica HOM05D005061 ORTHO05D006001 4.0e-10 68.9 159 39.6
Psat3g206160 Pisum sativum HOM05D005061 ORTHO05D006001 5.2e-10 68.6 157 42.0
SGA_v2.0_scaffold90G27899 Striga asiatica HOM05D005061 ORTHO05D006001 5.2e-10 68.6 145 38.6
Atru.chr4.1296 Acer truncatum HOM05D005061 ORTHO05D006001 2.0e-09 66.6 160 42.5
Atru.chr4.1292 Acer truncatum HOM05D005061 ORTHO05D006001 4.4e-09 65.5 127 44.9
BcaB07g34140 Brassica carinata HOM05D005061 ORTHO05D006001 7.5e-09 64.7 161 39.1
SGA_v2.0_scaffold128G34119 Striga asiatica HOM05D005061 ORTHO05D006001 7.5e-09 64.7 159 35.2
BraA02t08777Z Brassica rapa HOM05D005061 ORTHO05D006001 1.7e-08 63.5 168 37.5
unitig_26.g9510 Utricularia gibba HOM05D005061 ORTHO05D006001 1.7e-08 63.5 159 36.5
A02p37930 Brassica napus HOM05D005061 ORTHO05D006001 3.7e-08 62.4 168 36.9
Haze_11630 Corylus avellana HOM05D005061 ORTHO05D006001 3.7e-08 62.4 110 44.5
QL01p037004 Quercus lobata HOM05D005061 ORTHO05D006001 3.7e-08 62.4 183 39.3
Sp2g19580 Schrenkiella parvula HOM05D005061 ORTHO05D006001 6.3e-08 61.6 161 38.5
Cfa014943 Carpinus fangiana HOM05D005061 ORTHO05D006001 8.3e-08 61.2 100 46.0
Ca_04063_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 1.4e-07 60.5 154 40.9
Ca_04069_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 1.4e-07 60.5 154 40.9
Migut.G00717 Erythranthe guttata HOM05D005061 ORTHO05D006001 1.8e-07 60.1 154 36.4
CDE07G0811 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 2.4e-07 59.7 140 37.1
Duzib212G0867 Durio zibethinus HOM05D005061 ORTHO05D006001 2.4e-07 59.7 166 39.2
BolC7t44502H Brassica oleracea HOM05D005061 ORTHO05D006001 3.1e-07 59.3 125 38.4
Eucgr.G02600 Eucalyptus grandis HOM05D005061 ORTHO05D006001 3.1e-07 59.3 140 35.7
PSO675G5536 Papaver somniferum HOM05D005061 ORTHO05D006001 4.1e-07 58.9 138 37.0
Os11g0148600 Oryza sativa ssp. japonica HOM05D005061 ORTHO05D006001 5.4e-07 58.5 161 36.0
PSO541G4502 Papaver somniferum HOM05D005061 ORTHO05D006001 5.4e-07 58.5 138 37.0
Phvul.008G004900 Phaseolus vulgaris HOM05D005061 ORTHO05D006001 3.5e-06 55.8 155 38.1
arahy.Tifrunner.gnm1.ann1.IKZ5YQ Arachis hypogaea HOM05D000225 ORTHO05D001595 5.9e-06 55.1 86 47.7
MSTRG.9809 Avicennia marina HOM05D005061 ORTHO05D006001 7.7e-06 54.7 157 38.2
CDE04G1543 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 7.7e-06 54.7 167 34.1
Hund18997 Selenicereus undatus HOM05D005061 ORTHO05D006001 7.7e-06 54.7 157 37.6


User provided reference genes

Program Settings