Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G1743 Fragaria x ananassa HOM05D005313 ORTHO05D006317 8.0e-244 846.7 428 100.0
FAN17G2517 Fragaria x ananassa HOM05D005313 ORTHO05D006317 2.1e-183 646.0 431 82.4
FAN22G0311 Fragaria x ananassa HOM05D005313 ORTHO05D006317 6.7e-182 641.0 431 81.7
FvH4_4g32330 Fragaria vesca HOM05D005313 ORTHO05D006317 8.7e-182 640.6 430 82.1
FAN07G2253 Fragaria x ananassa HOM05D005313 ORTHO05D006317 3.1e-179 632.1 449 78.6
RcHm_v2.0_Chr4g0441121 Rosa chinensis HOM05D005313 ORTHO05D006317 4.8e-172 608.2 430 77.4
Prupe.1G323900 Prunus persica HOM05D005313 ORTHO05D006317 5.3e-155 551.6 423 72.1
MD16G1029000 Malus domestica HOM05D005313 ORTHO05D006317 4.4e-149 531.9 422 70.1
Ca_25713_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 5.2e-134 481.9 414 62.3
Potri.008G128900 Populus trichocarpa HOM05D005313 ORTHO05D006317 5.7e-133 478.4 405 64.9
Atru.chr9.122 Acer truncatum HOM05D005313 ORTHO05D006317 1.3e-132 477.2 389 66.8
CSS0048776 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 2.8e-132 476.1 406 64.0
Medtr1g030750 Medicago truncatula HOM05D005313 ORTHO05D006317 2.4e-131 473.0 402 63.2
Manes.17G006600 Manihot esculenta HOM05D005313 ORTHO05D006317 9.2e-131 471.1 389 65.3
Sabra08G0097700 Salix brachista HOM05D005313 ORTHO05D006317 9.2e-131 471.1 438 61.6
COL.COLO4_20475 Corchorus olitorius HOM05D005313 ORTHO05D006317 2.0e-130 469.9 405 64.2
Psat6g042560 Pisum sativum HOM05D005313 ORTHO05D006317 4.5e-130 468.8 411 61.3
TAR623G0220 Trochodendron aralioides HOM05D005313 ORTHO05D006317 5.9e-130 468.4 389 64.5
Eucgr.G02191 Eucalyptus grandis HOM05D005313 ORTHO05D006317 1.0e-129 467.6 431 62.2
Glyma.09G118600 Glycine max HOM05D005313 ORTHO05D006317 5.0e-129 465.3 419 60.1
Rhsim02G0199800 Rhododendron simsii HOM05D005313 ORTHO05D006317 6.6e-129 464.9 406 64.0
TWI31G1405 Tripterygium wilfordii HOM05D005313 ORTHO05D006317 8.6e-129 464.5 389 64.8
Glyma.02G238100 Glycine max HOM05D005313 ORTHO05D006317 1.1e-128 464.2 419 60.9
vmacro10642 Vaccinium macrocarpon HOM05D005313 ORTHO05D006317 1.1e-128 464.2 406 64.0
Thecc.02G280500 Theobroma cacao HOM05D005313 ORTHO05D006317 1.9e-128 463.4 392 65.3
QL01p001863 Quercus lobata HOM05D005313 ORTHO05D006317 4.3e-128 462.2 391 64.7
Lalb_Chr17g0338641 Lupinus albus HOM05D005313 ORTHO05D006317 9.5e-128 461.1 402 61.7
SalBow4G0219 Salvia bowleyana HOM05D005313 ORTHO05D006317 1.6e-127 460.3 398 64.8
Cc11_g08770 Coffea canephora HOM05D005313 ORTHO05D006317 2.1e-127 459.9 408 62.5
Lj2g0003652 Lotus japonicus HOM05D005313 ORTHO05D006317 2.1e-127 459.9 393 63.1
Phvul.003G023500 Phaseolus vulgaris HOM05D005313 ORTHO05D006317 4.7e-127 458.8 428 59.6
Duzib248G1582 Durio zibethinus HOM05D005313 ORTHO05D006317 1.8e-126 456.8 387 64.3
GSVIVG01011763001 Vitis vinifera HOM05D005313 ORTHO05D006317 2.3e-126 456.4 367 67.8
Lj6A747T68 Lonicera japonica HOM05D005313 ORTHO05D006317 3.1e-126 456.1 389 64.0
PGR119G0894 Punica granatum HOM05D005313 ORTHO05D006317 3.1e-126 456.1 384 64.3
PSO384G2037 Papaver somniferum HOM05D005313 ORTHO05D006317 8.9e-126 454.5 401 63.1
Gorai.002G179900 Gossypium raimondii HOM05D005313 ORTHO05D006317 2.0e-125 453.4 392 63.5
Gohir.A01G152800 Gossypium hirsutum HOM05D005313 ORTHO05D006317 2.6e-125 453.0 392 63.8
Cfa008602 Carpinus fangiana HOM05D005313 ORTHO05D006317 3.4e-125 452.6 382 65.2
VMungo1215G0481 Vigna mungo HOM05D005313 ORTHO05D006317 3.4e-125 452.6 426 59.2
Oeu024584.1 Olea europaea HOM05D005313 ORTHO05D006317 5.8e-125 451.8 402 63.4
MSTRG.895 Avicennia marina HOM05D005313 ORTHO05D006317 2.9e-124 449.5 399 62.4
Gohir.D01G145600 Gossypium hirsutum HOM05D005313 ORTHO05D006317 8.3e-124 448.0 392 62.8
THA.LOC104805057 Tarenaya hassleriana HOM05D005313 ORTHO05D006317 1.1e-123 447.6 400 62.0
CANSAT01G3269 Cannabis sativa HOM05D005313 ORTHO05D006317 1.9e-123 446.8 424 59.0
Lsat_1_v5_gn_3_54641 Lactuca sativa HOM05D005313 ORTHO05D006317 3.2e-123 446.0 422 59.5
Solyc05g008180.3 Solanum lycopersicum HOM05D005313 ORTHO05D006317 3.2e-123 446.0 404 61.4
Sopen05g004020 Solanum pennellii HOM05D005313 ORTHO05D006317 4.1e-123 445.7 404 61.4
PSO339G3364 Papaver somniferum HOM05D005313 ORTHO05D006317 1.6e-122 443.7 401 62.1
HanXRQChr15g0488661 Helianthus annuus HOM05D005313 ORTHO05D006317 6.0e-122 441.8 397 61.2
BcaB07g30404 Brassica carinata HOM05D005313 ORTHO05D006317 1.3e-121 440.7 403 62.3
Sed0021241 Sechium edule HOM05D005313 ORTHO05D006317 1.3e-121 440.7 400 61.5
Sc14g0007170 Simmondsia chinensis HOM05D005313 ORTHO05D006317 1.3e-121 440.7 371 63.6
ECA246G2448 Erigeron canadensis HOM05D005313 ORTHO05D006317 3.0e-121 439.5 390 62.8
Sp2g12800 Schrenkiella parvula HOM05D005313 ORTHO05D006317 3.9e-121 439.1 390 62.8
Thhalv10000908m.g Eutrema salsugineum HOM05D005313 ORTHO05D006317 8.6e-121 438.0 402 61.9
Peaxi162Scf00450g00614 Petunia axillaris HOM05D005313 ORTHO05D006317 8.6e-121 438.0 406 61.6
CsaV3_5G013570 Cucumis sativus L. HOM05D005313 ORTHO05D006317 1.1e-120 437.6 389 62.5
Nitab4.5_0000742g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 2.5e-120 436.4 404 61.1
BcaC03g17029 Brassica carinata HOM05D005313 ORTHO05D006317 4.3e-120 435.6 404 61.9
MELO3C018332.2 Cucumis melo HOM05D005313 ORTHO05D006317 4.3e-120 435.6 389 62.2
Carub.0005s0033 Capsella rubella HOM05D005313 ORTHO05D006317 7.3e-120 434.9 383 64.5
CARHR143870 Cardamine hirsuta HOM05D005313 ORTHO05D006317 9.5e-120 434.5 407 60.4
BolC2t11026H Brassica oleracea HOM05D005313 ORTHO05D006317 1.2e-119 434.1 404 61.6
Peaxi162Scf00159g00112 Petunia axillaris HOM05D005313 ORTHO05D006317 1.2e-119 434.1 406 61.3
C02p49400 Brassica napus HOM05D005313 ORTHO05D006317 2.1e-119 433.3 403 61.3
PGSC0003DMG400030501 Solanum tuberosum HOM05D005313 ORTHO05D006317 2.1e-119 433.3 371 64.2
AL5G10310 Arabidopsis lyrata HOM05D005313 ORTHO05D006317 2.8e-119 433.0 389 61.7
A02p31910 Brassica napus HOM05D005313 ORTHO05D006317 2.8e-119 433.0 404 61.6
BraA02t08201Z Brassica rapa HOM05D005313 ORTHO05D006317 2.8e-119 433.0 404 61.6
AT2G01350 Arabidopsis thaliana HOM05D005313 ORTHO05D006317 3.6e-119 432.6 389 62.0
Aa31LG2G8560 Aethionema arabicum HOM05D005313 ORTHO05D006317 1.8e-118 430.3 400 61.0
CDE05G1915 Ceratophyllum demersum HOM05D005313 ORTHO05D006317 4.0e-118 429.1 401 59.6
Hund08629 Selenicereus undatus HOM05D005313 ORTHO05D006317 5.2e-118 428.7 369 63.1
AUR62017725 Chenopodium quinoa HOM05D005313 ORTHO05D006317 6.8e-118 428.3 365 63.8
Aqoxy1G00025 Aquilegia oxysepala HOM05D005313 ORTHO05D006317 4.4e-117 425.6 424 56.8
EL10Ac7g15995 Beta vulgaris HOM05D005313 ORTHO05D006317 3.2e-115 419.5 365 62.7
AUR62032955 Chenopodium quinoa HOM05D005313 ORTHO05D006317 5.1e-113 412.1 393 59.3
Ah.01g012630 Amaranthus hybridus HOM05D005313 ORTHO05D006317 5.6e-112 408.7 382 59.9
Zm00001eb104420 Zea mays HOM05D005313 ORTHO05D006317 1.6e-111 407.1 408 56.6
Os09g0553600 Oryza sativa ssp. japonica HOM05D005313 ORTHO05D006317 2.1e-111 406.8 407 55.3
SalBow4G0808 Salvia bowleyana HOM05D005313 ORTHO05D006317 1.8e-110 403.7 365 62.2
Dinv17424 Davidia involucrata HOM05D005313 ORTHO05D006317 3.1e-110 402.9 356 62.4
HPP92_025383 Vanilla planifolia HOM05D005313 ORTHO05D006317 8.9e-110 401.4 370 58.4
Haze_11011 Corylus avellana HOM05D005313 ORTHO05D006317 1.2e-109 401.0 356 62.1
SGA_v2.0_scaffold50G18517 Striga asiatica HOM05D005313 ORTHO05D006317 2.9e-108 396.4 406 57.9
Ciclev10018157m.g Citrus clementina HOM05D005313 ORTHO05D006317 1.1e-107 394.4 343 64.1
BcaC03g17031 Brassica carinata HOM05D005313 ORTHO05D006317 2.1e-106 390.2 404 58.4
CAN.G1334.2 Capsicum annuum HOM05D005313 ORTHO05D006317 1.3e-105 387.5 341 63.6
Cpa.g.sc65.129 Carica papaya HOM05D005313 ORTHO05D006317 3.0e-105 386.3 384 57.8
Pp3c8_18030 Physcomitrium patens HOM05D005313 ORTHO05D006317 9.5e-104 381.3 367 56.4
Migut.L00987 Erythranthe guttata HOM05D005313 ORTHO05D006317 1.5e-101 374.0 344 60.5
Duzib248G1474 Durio zibethinus HOM05D005313 ORTHO05D006317 4.4e-101 372.5 336 60.4
arahy.Tifrunner.gnm1.ann1.G5QWBZ Arachis hypogaea HOM05D005313 ORTHO05D006317 1.1e-99 367.9 405 52.8
CiPaw.06G012200 Carya illinoinensis HOM05D005313 ORTHO05D006317 4.2e-99 365.9 349 58.5
unitig_0.g2330 Utricularia gibba HOM05D005313 ORTHO05D006317 6.0e-98 362.1 384 55.5
arahy.Tifrunner.gnm1.ann1.Y1EHRK Arachis hypogaea HOM05D005313 ORTHO05D006317 3.0e-97 359.8 402 51.7
Nn2g15695 Nelumbo nucifera HOM05D005313 ORTHO05D006317 9.6e-96 354.8 425 52.7
SMO164G0169 Selaginella moellendorffii HOM05D005313 ORTHO05D006317 9.9e-93 344.7 367 52.9
Mapoly0011s0070 Marchantia polymorpha HOM05D005313 ORTHO05D006317 8.7e-89 331.6 352 52.0
CBR_g30917 Chara braunii HOM05D005313 ORTHO05D006317 1.1e-86 324.7 388 50.0
Nitab4.5_0004816g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 1.4e-86 324.3 296 62.8
SEGI_23840 Sequoiadendron giganteum HOM05D005313 ORTHO05D006317 7.9e-82 308.5 309 54.4
DCAR_023608 Daucus carota HOM05D005313 ORTHO05D006317 6.4e-76 288.9 275 58.5
Ca_12605_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 8.4e-76 288.5 286 55.2
MCO15G382 Micromonas commoda HOM05D005313 ORTHO05D006317 1.8e-65 254.2 355 45.1
ATR0807G196 Amborella trichopoda HOM05D005313 ORTHO05D006317 9.7e-64 248.4 165 77.0
Cre02.g141200 Chlamydomonas reinhardtii HOM05D005313 ORTHO05D006317 1.3e-63 248.1 364 43.1
PRCOL_00006420 Prasinoderma coloniale HOM05D005313 ORTHO05D006317 2.8e-63 246.9 357 44.0
ClCG07G006260 Citrullus lanatus HOM05D005313 ORTHO05D006317 4.8e-63 246.1 156 79.5
AagrBONN_evm.TU.Sc2ySwM_117.3802 Anthoceros agrestis HOM05D005313 ORTHO05D006317 5.9e-61 239.2 282 51.1
Migut.L00982 Erythranthe guttata HOM05D005313 ORTHO05D006317 2.9e-60 236.9 397 40.8
Zm00001eb320780 Zea mays HOM05D005313 ORTHO05D006317 5.0e-60 236.1 187 67.9
Potri.010G113500 Populus trichocarpa HOM05D005313 ORTHO05D006317 1.8e-54 217.6 279 47.0
Dinv05167 Davidia involucrata HOM05D005313 ORTHO05D006317 5.3e-54 216.1 139 80.6
RcHm_v2.0_Chr2g0157601 Rosa chinensis HOM05D005313 ORTHO05D006317 2.7e-50 203.8 112 87.5
SHI04675 Sapria himalayana HOM05D005313 ORTHO05D006317 3.3e-48 196.8 151 67.5
SHI04677 Sapria himalayana HOM05D005313 ORTHO05D006317 1.2e-45 188.3 129 73.6
CsaV3_UNG236450 Cucumis sativus L. HOM05D005313 ORTHO05D006317 3.5e-45 186.8 296 42.2
AagrBONN_evm.TU.Sc2ySwM_368.1836 Anthoceros agrestis HOM05D005313 ORTHO05D006317 3.0e-41 173.7 155 60.6
Actinidia26811 Actinidia chinensis HOM05D005313 ORTHO05D006317 9.7e-40 168.7 203 47.3
A06p44480 Brassica napus HOM05D005313 ORTHO05D006317 4.5e-37 159.8 290 40.3
ClCG07G006250 Citrullus lanatus HOM05D005313 ORTHO05D006317 3.8e-36 156.8 110 70.0
Oeu045874.1 Olea europaea HOM05D005313 ORTHO05D006317 4.1e-30 136.7 243 41.6
Actinidia14964 Actinidia chinensis HOM05D005313 ORTHO05D006317 2.9e-28 130.6 317 32.5
TPR.G36891 Trifolium pratense HOM05D005313 ORTHO05D006317 3.6e-26 123.6 101 67.3
Ca_31307_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 1.8e-25 121.3 332 28.6
Glyma.07G165500 Glycine max HOM05D005313 ORTHO05D006317 4.9e-23 113.2 81 71.6
TPR.G36912 Trifolium pratense HOM05D005313 ORTHO05D006317 1.1e-22 112.1 75 68.0
Sabra10G0083500 Salix brachista HOM05D005313 ORTHO05D006317 5.9e-21 106.3 294 31.0
MBI06_g07791_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 6.1e-18 96.3 59 86.4
CAN.G1020.2 Capsicum annuum HOM05D005313 ORTHO05D006317 1.0e-17 95.5 110 50.0
COL.COLO4_10084 Corchorus olitorius HOM05D005313 ORTHO05D006317 1.0e-17 95.5 56 78.6
COL.COLO4_10085 Corchorus olitorius HOM05D005313 ORTHO05D006317 2.0e-16 91.3 58 70.7
Aa31LG11G8270 Aethionema arabicum HOM05D005313 ORTHO05D006317 7.5e-16 89.4 88 60.2
CsaV3_UNG236470 Cucumis sativus L. HOM05D005313 ORTHO05D006317 3.7e-15 87.0 67 70.1
Aa31LG11G8280 Aethionema arabicum HOM05D005313 ORTHO05D006317 1.6e-13 81.6 69 58.0
BcaC06g31315 Brassica carinata HOM05D005313 ORTHO05D006317 5.0e-12 76.6 55 67.3
Actinidia01955 Actinidia chinensis HOM05D005313 ORTHO05D006317 1.5e-11 75.1 43 76.7
AagrBONN_evm.TU.Sc2ySwM_117.3801 Anthoceros agrestis HOM05D005313 ORTHO05D006317 1.2e-10 72.0 62 59.7
CSS0042289 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 4.9e-07 60.1 47 63.8
DCAR_023607 Daucus carota HOM05D005313 ORTHO05D006317 5.4e-06 56.6 58 55.2


User provided reference genes

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