Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G1687 Fragaria x ananassa HOM05D005475 ORTHO05D006575 3.2e-47 191.4 97 100.0
FAN17G2060 Fragaria x ananassa HOM05D005475 ORTHO05D006575 2.6e-41 171.8 89 97.8
FAN22G0728 Fragaria x ananassa HOM05D005475 ORTHO05D006575 6.0e-38 160.6 79 100.0
FvH4_4g04340 Fragaria vesca HOM05D005475 ORTHO05D006575 1.3e-37 159.5 80 98.8
FAN22G1457 Fragaria x ananassa HOM05D005475 ORTHO05D006575 5.6e-36 154.1 79 97.5
MD13G1219400 Malus domestica HOM05D005475 ORTHO05D006575 1.6e-22 109.4 91 64.8
MD16G1224800 Malus domestica HOM05D005475 ORTHO05D006575 1.6e-22 109.4 91 65.9
RcHm_v2.0_Chr4g0394791 Rosa chinensis HOM05D005475 ORTHO05D006575 2.5e-20 102.1 92 63.0
Prupe.1G046100 Prunus persica HOM05D005475 ORTHO05D006575 4.3e-20 101.3 91 61.5
Phvul.007G271300 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 1.8e-18 95.9 65 72.3
Glyma.10G136600 Glycine max HOM05D005475 ORTHO05D006575 2.4e-18 95.5 66 71.2
Cfa014769 Carpinus fangiana HOM05D005475 ORTHO05D006575 7.6e-17 90.5 94 56.4
Psat6g107160 Pisum sativum HOM05D005475 ORTHO05D006575 1.0e-16 90.1 64 67.2
Potri.008G170700 Populus trichocarpa HOM05D005475 ORTHO05D006575 1.7e-16 89.4 95 56.8
Ca_11926_v3 Cicer arietinum L. HOM05D005475 ORTHO05D006575 4.9e-16 87.8 73 63.0
TWI73G1305 Tripterygium wilfordii HOM05D005475 ORTHO05D006575 4.9e-16 87.8 67 67.2
Atru.chr4.1933 Acer truncatum HOM05D005475 ORTHO05D006575 1.4e-15 86.3 74 58.1
Dinv27096 Davidia involucrata HOM05D005475 ORTHO05D006575 2.5e-15 85.5 54 74.1
RcHm_v2.0_Chr4g0394821 Rosa chinensis HOM05D005475 ORTHO05D006575 2.5e-15 85.5 82 59.8
THA.LOC104816000 Tarenaya hassleriana HOM05D005475 ORTHO05D006575 2.5e-15 85.5 71 56.3
Potri.010G067200 Populus trichocarpa HOM05D005475 ORTHO05D006575 9.3e-15 83.6 66 66.7
GSVIVG01027899001 Vitis vinifera HOM05D005475 ORTHO05D006575 9.3e-15 83.6 63 63.5
CiPaw.02G108100 Carya illinoinensis HOM05D005475 ORTHO05D006575 2.1e-14 82.4 91 52.7
Thecc.04G261900 Theobroma cacao HOM05D005475 ORTHO05D006575 2.1e-14 82.4 87 51.7
COL.COLO4_15946 Corchorus olitorius HOM05D005475 ORTHO05D006575 2.7e-14 82.0 80 55.0
Gohir.A02G042200 Gossypium hirsutum HOM05D005475 ORTHO05D006575 2.7e-14 82.0 85 51.8
Hma1.2p1_0385F.1_g141450 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 2.7e-14 82.0 67 65.7
CiPaw.01G179400 Carya illinoinensis HOM05D005475 ORTHO05D006575 3.5e-14 81.6 92 53.3
Gorai.005G053100 Gossypium raimondii HOM05D005475 ORTHO05D006575 3.5e-14 81.6 85 52.9
Glyma.20G201100 Glycine max HOM05D005475 ORTHO05D006575 4.6e-14 81.3 69 66.7
Gohir.D02G047800 Gossypium hirsutum HOM05D005475 ORTHO05D006575 4.6e-14 81.3 85 51.8
Hma1.2p1_0112F.1_g054570 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 4.6e-14 81.3 82 59.8
Medtr1g045370 Medicago truncatula HOM05D005475 ORTHO05D006575 4.6e-14 81.3 64 64.1
Glyma.20G086200 Glycine max HOM05D005475 ORTHO05D006575 7.9e-14 80.5 56 69.6
Lalb_Chr19g0128471 Lupinus albus HOM05D005475 ORTHO05D006575 1.0e-13 80.1 69 63.8
Glyma.10G189800 Glycine max HOM05D005475 ORTHO05D006575 1.3e-13 79.7 68 67.6
CANSAT78G0624 Cannabis sativa HOM05D005475 ORTHO05D006575 2.3e-13 79.0 89 49.4
Medtr1g073660 Medicago truncatula HOM05D005475 ORTHO05D006575 3.0e-13 78.6 77 57.1
TAR362G0816 Trochodendron aralioides HOM05D005475 ORTHO05D006575 3.9e-13 78.2 54 66.7
Aa31LG1G20410 Aethionema arabicum HOM05D005475 ORTHO05D006575 5.1e-13 77.8 88 48.9
Aa31LG5G3900 Aethionema arabicum HOM05D005475 ORTHO05D006575 5.1e-13 77.8 84 51.2
CAN.G220.90 Capsicum annuum HOM05D005475 ORTHO05D006575 5.1e-13 77.8 71 57.7
Peaxi162Scf00033g02837 Petunia axillaris HOM05D005475 ORTHO05D006575 5.1e-13 77.8 55 67.3
CARHR127400 Cardamine hirsuta HOM05D005475 ORTHO05D006575 6.7e-13 77.4 67 56.7
Ciclev10006301m.g Citrus clementina HOM05D005475 ORTHO05D006575 6.7e-13 77.4 69 53.6
MBI07_g18714_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 6.7e-13 77.4 55 63.6
Solyc09g090540.3 Solanum lycopersicum HOM05D005475 ORTHO05D006575 6.7e-13 77.4 54 66.7
Nn3g19747 Nelumbo nucifera HOM05D005475 ORTHO05D006575 8.7e-13 77.0 53 66.0
Sed0016324 Sechium edule HOM05D005475 ORTHO05D006575 8.7e-13 77.0 65 56.9
Sabra08G0130500 Salix brachista HOM05D005475 ORTHO05D006575 1.1e-12 76.6 66 62.1
Cc03_g06010 Coffea canephora HOM05D005475 ORTHO05D006575 1.5e-12 76.3 85 48.2
Duzib212G0290 Durio zibethinus HOM05D005475 ORTHO05D006575 1.5e-12 76.3 80 55.0
Lj5g0027748 Lotus japonicus HOM05D005475 ORTHO05D006575 1.9e-12 75.9 81 55.6
Lj6g0010293 Lotus japonicus HOM05D005475 ORTHO05D006575 1.9e-12 75.9 48 72.9
Phvul.L002444 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 2.5e-12 75.5 69 63.8
Sed0012950 Sechium edule HOM05D005475 ORTHO05D006575 2.5e-12 75.5 66 54.5
BcaB02g10558 Brassica carinata HOM05D005475 ORTHO05D006575 3.3e-12 75.1 88 47.7
Sp4g15710 Schrenkiella parvula HOM05D005475 ORTHO05D006575 3.3e-12 75.1 90 48.9
Hund03078 Selenicereus undatus HOM05D005475 ORTHO05D006575 3.3e-12 75.1 54 61.1
Nitab4.5_0002709g0070 Nicotiana tabacum HOM05D005475 ORTHO05D006575 4.3e-12 74.7 77 49.4
Psat6g117200 Pisum sativum HOM05D005475 ORTHO05D006575 4.3e-12 74.7 98 48.0
TPR.G28846 Trifolium pratense HOM05D005475 ORTHO05D006575 4.3e-12 74.7 100 45.0
AL4G29060 Arabidopsis lyrata HOM05D005475 ORTHO05D006575 5.7e-12 74.3 64 56.2
CSS0013344 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 5.7e-12 74.3 76 56.6
ClCG05G004080 Citrullus lanatus HOM05D005475 ORTHO05D006575 5.7e-12 74.3 54 61.1
ECA248G3571 Erigeron canadensis HOM05D000730 ORTHO05D000578 5.7e-12 74.3 68 57.4
Thhalv10017471m.g Eutrema salsugineum HOM05D005475 ORTHO05D006575 7.4e-12 73.9 64 56.2
AT2G33390 Arabidopsis thaliana HOM05D005475 ORTHO05D006575 9.7e-12 73.6 64 57.8
Nitab4.5_0001051g0090 Nicotiana tabacum HOM05D005475 ORTHO05D006575 1.6e-11 72.8 77 48.1
QL06p020702 Quercus lobata HOM05D005475 ORTHO05D006575 1.6e-11 72.8 88 50.0
TPR.G27310 Trifolium pratense HOM05D005475 ORTHO05D006575 1.6e-11 72.8 54 66.7
VMungo0720G1758 Vigna mungo HOM05D005475 ORTHO05D006575 1.6e-11 72.8 69 62.3
Carub.0004s1502 Capsella rubella HOM05D005475 ORTHO05D006575 2.2e-11 72.4 79 51.9
vmacro08540 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 2.2e-11 72.4 73 53.4
Gohir.D10G159400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 2.8e-11 72.0 60 60.0
Gorai.011G179000 Gossypium raimondii HOM05D005475 ORTHO05D006575 2.8e-11 72.0 60 60.0
BcaC02g11426 Brassica carinata HOM05D005475 ORTHO05D006575 4.8e-11 71.2 86 45.3
A05p12130 Brassica napus HOM05D005475 ORTHO05D006575 4.8e-11 71.2 94 42.6
C04p15700 Brassica napus HOM05D005475 ORTHO05D006575 4.8e-11 71.2 86 45.3
BolC4t23138H Brassica oleracea HOM05D005475 ORTHO05D006575 4.8e-11 71.2 86 45.3
Lsat_1_v5_gn_1_75221 Lactuca sativa HOM05D005475 ORTHO05D006575 6.3e-11 70.9 77 51.9
PGR031G0084 Punica granatum HOM05D005475 ORTHO05D006575 6.3e-11 70.9 64 54.7
Actinidia11364 Actinidia chinensis HOM05D005475 ORTHO05D006575 8.2e-11 70.5 65 52.3
Gohir.A10G108400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 8.2e-11 70.5 60 58.3
MBI10_g38466_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 8.2e-11 70.5 65 60.0
Sopen09g033470 Solanum pennellii HOM05D005475 ORTHO05D006575 8.2e-11 70.5 49 67.3
PGSC0003DMG400017155 Solanum tuberosum HOM05D005475 ORTHO05D006575 8.2e-11 70.5 49 67.3
BraA05t20157Z Brassica rapa HOM05D005475 ORTHO05D006575 1.1e-10 70.1 95 42.1
Rhsim02G0042800 Rhododendron simsii HOM05D005475 ORTHO05D006575 1.4e-10 69.7 67 49.3
PSO674G0109 Papaver somniferum HOM05D005475 ORTHO05D006575 1.8e-10 69.3 52 61.5
PSO832G2786 Papaver somniferum HOM05D005475 ORTHO05D006575 1.8e-10 69.3 52 61.5
vmacro15470 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 2.4e-10 68.9 57 56.1
Lalb_Chr06g0169471 Lupinus albus HOM05D005475 ORTHO05D006575 3.1e-10 68.6 84 48.8
Sabra10G0040200 Salix brachista HOM05D005475 ORTHO05D006575 3.1e-10 68.6 69 55.1
Eucgr.H02964 Eucalyptus grandis HOM05D005475 ORTHO05D006575 1.2e-09 66.6 52 59.6
TAR365G0748 Trochodendron aralioides HOM05D005475 ORTHO05D006575 1.2e-09 66.6 52 57.7
Manes.03G160400 Manihot esculenta HOM05D005475 ORTHO05D006575 1.5e-09 66.2 63 55.6
Actinidia39922 Actinidia chinensis HOM05D005475 ORTHO05D006575 2.6e-09 65.5 75 44.0
Duzib151G0481 Durio zibethinus HOM05D005475 ORTHO05D006575 3.4e-09 65.1 60 55.0
Migut.N00292 Erythranthe guttata HOM05D005475 ORTHO05D006575 3.4e-09 65.1 55 56.4
CSS0022443 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 5.9e-09 64.3 63 55.6
Aqoxy2G03723 Aquilegia oxysepala HOM05D005475 ORTHO05D006575 7.6e-09 63.9 44 59.1
BcaC02g07831 Brassica carinata HOM05D005475 ORTHO05D006575 7.6e-09 63.9 49 61.2
BcaC07g37337 Brassica carinata HOM05D005475 ORTHO05D006575 7.6e-09 63.9 46 67.4
A03p18710 Brassica napus HOM05D005475 ORTHO05D006575 7.6e-09 63.9 44 68.2
C04p62850 Brassica napus HOM05D005475 ORTHO05D006575 7.6e-09 63.9 49 61.2
C08p07780 Brassica napus HOM05D005475 ORTHO05D006575 7.6e-09 63.9 46 67.4
BolC4t27768H Brassica oleracea HOM05D005475 ORTHO05D006575 7.6e-09 63.9 49 61.2
BolC8t47626H Brassica oleracea HOM05D005475 ORTHO05D006575 7.6e-09 63.9 46 67.4
BraA03t11131Z Brassica rapa HOM05D005475 ORTHO05D006575 7.6e-09 63.9 44 68.2
BcaB06g28682 Brassica carinata HOM05D005475 ORTHO05D006575 1.3e-08 63.2 44 65.9
SalBow3G2868 Salvia bowleyana HOM05D005475 ORTHO05D006575 1.3e-08 63.2 58 44.8
Actinidia20831 Actinidia chinensis HOM05D005475 ORTHO05D006575 1.7e-08 62.8 87 39.1
A04p25690 Brassica napus HOM05D005475 ORTHO05D006575 1.7e-08 62.8 44 65.9
BraA04t18073Z Brassica rapa HOM05D005475 ORTHO05D006575 1.7e-08 62.8 44 65.9
MELO3C006388.2 Cucumis melo HOM05D000730 ORTHO05D000578 1.7e-08 62.8 56 53.6
Manes.15G044300 Manihot esculenta HOM05D005475 ORTHO05D006575 3.8e-08 61.6 68 50.0
CsaV3_3G011800 Cucumis sativus L. HOM05D005475 ORTHO05D006575 5.0e-08 61.2 54 53.7
CDE08G0603 Ceratophyllum demersum HOM05D005475 ORTHO05D006575 8.5e-08 60.5 64 50.0
Sc13g0006140 Simmondsia chinensis HOM05D005475 ORTHO05D006575 8.5e-08 60.5 55 58.2
BcaC01g05844 Brassica carinata HOM05D005475 ORTHO05D006575 1.4e-07 59.7 44 63.6
C03p21860 Brassica napus HOM05D005475 ORTHO05D006575 1.4e-07 59.7 44 63.6
BolC3t14568H Brassica oleracea HOM05D005475 ORTHO05D006575 1.4e-07 59.7 44 63.6
Nn1g02914 Nelumbo nucifera HOM05D005475 ORTHO05D006575 1.4e-07 59.7 51 58.8
AUR62002181 Chenopodium quinoa HOM05D005475 ORTHO05D006575 4.2e-07 58.2 62 51.6
AUR62015529 Chenopodium quinoa HOM05D005475 ORTHO05D006575 4.2e-07 58.2 62 51.6
HanXRQChr01g0022901 Helianthus annuus HOM05D005475 ORTHO05D006575 4.2e-07 58.2 37 73.0
Ah.04g155370 Amaranthus hybridus HOM05D005475 ORTHO05D006575 5.5e-07 57.8 60 60.0
Lalb_Chr03g0037011 Lupinus albus HOM05D005475 ORTHO05D006575 5.5e-07 57.8 90 42.2
Lalb_Chr02g0150621 Lupinus albus HOM05D005475 ORTHO05D006575 7.2e-07 57.4 38 73.7
Os03g0138400 Oryza sativa ssp. japonica HOM05D005475 ORTHO05D006575 3.6e-06 55.1 53 54.7
Sed0016405 Sechium edule HOM05D005475 ORTHO05D006575 6.1e-06 54.3 51 52.9


User provided reference genes

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