Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G1622 Fragaria x ananassa HOM05D006816 ORTHO05D008666 1.1e-287 992.6 541 100.0
FvH4_4g25720 Fragaria vesca HOM05D006816 ORTHO05D008666 1.5e-279 965.7 546 97.4
FAN22G0176 Fragaria x ananassa HOM05D006816 ORTHO05D008666 2.6e-279 964.9 541 92.2
FAN17G1412 Fragaria x ananassa HOM05D006816 ORTHO05D008666 7.4e-279 963.4 543 92.3
RcHm_v2.0_Chr4g0433151 Rosa chinensis HOM05D006816 ORTHO05D008666 2.6e-255 885.2 540 90.0
MD13G1099700 Malus domestica HOM05D006816 ORTHO05D008666 7.1e-229 797.3 544 78.5
TAR622G0126 Trochodendron aralioides HOM05D006816 ORTHO05D008666 8.4e-198 694.1 549 68.3
FAN07G2231 Fragaria x ananassa HOM05D006816 ORTHO05D008666 2.9e-190 669.1 369 93.8
Dinv15216 Davidia involucrata HOM05D006816 ORTHO05D008666 1.5e-186 656.8 549 67.0
GSVIVG01000542001 Vitis vinifera HOM05D006816 ORTHO05D008666 7.4e-186 654.4 539 67.3
Ciclev10030964m.g Citrus clementina HOM05D006816 ORTHO05D008666 1.6e-185 653.3 551 65.7
QL03p057598 Quercus lobata HOM05D006816 ORTHO05D008666 1.4e-184 650.2 561 66.1
Eucgr.H02486 Eucalyptus grandis HOM05D006816 ORTHO05D008666 3.4e-183 645.6 576 62.8
TWI36G0164 Tripterygium wilfordii HOM05D006816 ORTHO05D008666 2.2e-182 642.9 538 65.1
Haze_12261 Corylus avellana HOM05D006816 ORTHO05D008666 3.8e-182 642.1 626 60.4
Cpa.g.sc33.36 Carica papaya HOM05D006816 ORTHO05D008666 5.0e-182 641.7 547 66.0
Gohir.D02G158100 Gossypium hirsutum HOM05D006816 ORTHO05D008666 7.9e-180 634.4 550 64.9
Gorai.005G177300 Gossypium raimondii HOM05D006816 ORTHO05D008666 7.9e-180 634.4 550 64.9
CANSAT01G2021 Cannabis sativa HOM05D006816 ORTHO05D008666 1.0e-179 634.0 548 69.2
Lj3C1059T10 Lonicera japonica HOM05D006816 ORTHO05D008666 3.9e-179 632.1 546 63.9
Sabra10G0021100 Salix brachista HOM05D006816 ORTHO05D008666 2.5e-178 629.4 557 66.6
Gohir.A03G133700 Gossypium hirsutum HOM05D006816 ORTHO05D008666 9.7e-178 627.5 550 63.1
Atru.chr11.2152 Acer truncatum HOM05D006816 ORTHO05D008666 2.8e-177 625.9 539 66.2
Manes.13G022900 Manihot esculenta HOM05D006816 ORTHO05D008666 1.4e-176 623.6 545 63.9
CSS0008455 Camellia sinensis var. sinensis HOM05D006816 ORTHO05D008666 5.3e-176 621.7 550 65.6
Nn4g22582 Nelumbo nucifera HOM05D006816 ORTHO05D008666 1.7e-174 616.7 546 66.1
COL.COLO4_23463 Corchorus olitorius HOM05D006816 ORTHO05D008666 1.9e-173 613.2 579 61.3
Thhalv10018280m.g Eutrema salsugineum HOM05D006816 ORTHO05D008666 2.1e-172 609.8 538 62.3
PGR119G0117 Punica granatum HOM05D006816 ORTHO05D008666 1.4e-171 607.1 551 66.4
AT1G67840 Arabidopsis thaliana HOM05D006816 ORTHO05D008666 5.1e-171 605.1 537 62.8
Carub.0002s1430 Capsella rubella HOM05D006816 ORTHO05D008666 5.1e-171 605.1 542 62.2
BcaB03g15378 Brassica carinata HOM05D006816 ORTHO05D008666 2.0e-170 603.2 541 63.0
CARHR060480 Cardamine hirsuta HOM05D006816 ORTHO05D008666 7.4e-170 601.3 533 62.7
CsaV3_5G031010 Cucumis sativus L. HOM05D006816 ORTHO05D008666 2.2e-169 599.7 538 61.3
AL2G26590 Arabidopsis lyrata HOM05D006816 ORTHO05D008666 3.7e-169 599.0 537 62.4
PSO063G6228 Papaver somniferum HOM05D006816 ORTHO05D008666 3.7e-169 599.0 541 61.6
Aqoxy5G03738 Aquilegia oxysepala HOM05D006816 ORTHO05D008666 8.2e-169 597.8 541 61.2
C06p38240 Brassica napus HOM05D006816 ORTHO05D008666 1.4e-168 597.0 536 62.3
BolC6t38923H Brassica oleracea HOM05D006816 ORTHO05D008666 1.4e-168 597.0 538 62.1
PSO754G0080 Papaver somniferum HOM05D006816 ORTHO05D008666 1.8e-168 596.7 541 61.4
THA.LOC104825556 Tarenaya hassleriana HOM05D006816 ORTHO05D008666 1.8e-168 596.7 534 62.0
BcaC08g46032 Brassica carinata HOM05D006816 ORTHO05D008666 3.1e-168 595.9 538 62.3
MELO3C011940.2 Cucumis melo HOM05D006816 ORTHO05D008666 3.1e-168 595.9 551 60.4
Sp5g22850 Schrenkiella parvula HOM05D006816 ORTHO05D008666 3.1e-168 595.9 537 61.8
Glyma.05G174600 Glycine max HOM05D006816 ORTHO05D008666 5.3e-168 595.1 541 62.1
AUR62024254 Chenopodium quinoa HOM05D006816 ORTHO05D008666 1.5e-167 593.6 577 58.8
VMungo0251G0196 Vigna mungo HOM05D006816 ORTHO05D008666 5.9e-167 591.7 542 62.4
Lsat_1_v5_gn_4_4020 Lactuca sativa HOM05D006816 ORTHO05D008666 1.7e-166 590.1 547 62.0
Hund06034 Selenicereus undatus HOM05D006816 ORTHO05D008666 1.7e-166 590.1 538 60.6
Ah.02g130220 Amaranthus hybridus HOM05D006816 ORTHO05D008666 2.9e-166 589.3 538 61.7
BraA07t30858Z Brassica rapa HOM05D006816 ORTHO05D008666 2.9e-166 589.3 539 61.2
Lalb_Chr07g0185401 Lupinus albus HOM05D006816 ORTHO05D008666 2.9e-166 589.3 542 61.1
A07p32350 Brassica napus HOM05D006816 ORTHO05D008666 1.1e-165 587.4 539 61.0
Phvul.002G259600 Phaseolus vulgaris HOM05D006816 ORTHO05D008666 1.4e-165 587.0 544 61.0
Oeu057544.1 Olea europaea HOM05D006816 ORTHO05D008666 5.5e-165 585.1 541 59.3
Aa31sc755G30 Aethionema arabicum HOM05D006816 ORTHO05D008666 7.2e-165 584.7 545 60.2
ECA234G3219 Erigeron canadensis HOM05D006816 ORTHO05D008666 7.2e-165 584.7 535 60.4
Migut.K00611 Erythranthe guttata HOM05D006816 ORTHO05D008666 1.2e-164 583.9 542 61.1
PGSC0003DMG400018598 Solanum tuberosum HOM05D006816 ORTHO05D008666 2.1e-164 583.2 561 59.9
TPR.G6183 Trifolium pratense HOM05D006816 ORTHO05D008666 2.1e-164 583.2 541 60.3
Medtr8g089810 Medicago truncatula HOM05D006816 ORTHO05D008666 3.6e-164 582.4 540 60.6
Solyc05g013670.3 Solanum lycopersicum HOM05D006816 ORTHO05D008666 6.1e-164 581.6 560 59.6
EL10Ac6g13857 Beta vulgaris HOM05D006816 ORTHO05D008666 1.4e-163 580.5 545 61.7
HanXRQChr17g0569531 Helianthus annuus HOM05D006816 ORTHO05D008666 3.0e-163 579.3 533 60.8
Nitab4.5_0006963g0030 Nicotiana tabacum HOM05D006816 ORTHO05D008666 3.9e-163 578.9 553 60.6
Sopen05g008580 Solanum pennellii HOM05D006816 ORTHO05D008666 6.7e-163 578.2 561 59.5
Sed0004203 Sechium edule HOM05D006816 ORTHO05D008666 8.2e-161 571.2 538 59.3
ClCG05G025840 Citrullus lanatus HOM05D006816 ORTHO05D008666 1.4e-160 570.5 546 59.5
Lj4g0008868 Lotus japonicus HOM05D006816 ORTHO05D008666 3.1e-160 569.3 542 59.8
Ca_17778_v3 Cicer arietinum L. HOM05D006816 ORTHO05D008666 1.2e-159 567.4 541 59.3
Duzib251G0886 Durio zibethinus HOM05D006816 ORTHO05D008666 2.9e-158 562.8 551 64.6
SalBow2G0630 Salvia bowleyana HOM05D006816 ORTHO05D008666 5.5e-157 558.5 568 57.6
Psat7g059360 Pisum sativum HOM05D006816 ORTHO05D008666 4.7e-156 555.4 541 58.6
AUR62005487 Chenopodium quinoa HOM05D006816 ORTHO05D008666 1.5e-154 550.4 615 53.0
Peaxi162Scf00128g00318 Petunia axillaris HOM05D006816 ORTHO05D008666 4.8e-153 545.4 545 58.3
vmacro01121 Vaccinium macrocarpon HOM05D006816 ORTHO05D008666 1.8e-152 543.5 562 58.7
Cc11_g15850 Coffea canephora HOM05D006816 ORTHO05D008666 7.0e-152 541.6 535 58.9
Prupe.1G246300 Prunus persica HOM05D006816 ORTHO05D008666 1.1e-149 534.3 372 77.7
unitig_699.g19932 Utricularia gibba HOM05D006816 ORTHO05D008666 9.8e-146 521.2 543 55.6
ATR0824G245 Amborella trichopoda HOM05D006816 ORTHO05D008666 4.1e-136 489.2 560 52.5
DCAR_031163 Daucus carota HOM05D006816 ORTHO05D008666 5.0e-134 482.3 550 53.5
CAN.G436.5 Capsicum annuum HOM05D006816 ORTHO05D008666 2.5e-133 479.9 480 58.8
Sc11g0000930 Simmondsia chinensis HOM05D006816 ORTHO05D008666 2.5e-133 479.9 474 63.5
Zm00001eb319330 Zea mays HOM05D006816 ORTHO05D008666 1.0e-131 474.6 541 51.8
Actinidia01356 Actinidia chinensis HOM05D006816 ORTHO05D008666 2.0e-130 470.3 478 57.9
Nitab4.5_0000524g0100 Nicotiana tabacum HOM05D006816 ORTHO05D008666 1.3e-126 457.6 467 58.0
Thecc.02G261900 Theobroma cacao HOM05D006816 ORTHO05D008666 2.9e-121 439.9 383 65.5
Potri.010G047500 Populus trichocarpa HOM05D006816 ORTHO05D008666 8.3e-113 411.8 374 64.7
SEGI_18687 Sequoiadendron giganteum HOM05D006816 ORTHO05D008666 3.2e-112 409.8 545 45.7
SGA_v2.0_scaffold100G29566 Striga asiatica HOM05D006816 ORTHO05D008666 7.3e-109 398.7 566 49.8
CiPaw.05G180700 Carya illinoinensis HOM05D006816 ORTHO05D008666 1.2e-108 397.9 331 68.9
arahy.Tifrunner.gnm1.ann1.2HFS1Z Arachis hypogaea HOM05D006816 ORTHO05D008666 6.4e-105 385.6 382 60.5
arahy.Tifrunner.gnm1.ann1.CH9KSW Arachis hypogaea HOM05D006816 ORTHO05D008666 7.1e-104 382.1 382 59.9
HPP92_023364 Vanilla planifolia HOM05D006816 ORTHO05D008666 4.6e-87 326.2 322 57.5
Os12g0292900 Oryza sativa ssp. japonica HOM05D006816 ORTHO05D008666 7.6e-82 308.9 386 49.7
CDE02G3152 Ceratophyllum demersum HOM05D006816 ORTHO05D008666 2.5e-77 293.9 428 45.8
Mapoly0088s0066 Marchantia polymorpha HOM05D006816 ORTHO05D008666 7.6e-66 255.8 583 34.0
MBI17_g43191_MAGBIO Magnolia biondii HOM05D006816 ORTHO05D008666 2.9e-65 253.8 228 59.2
Glyma.08G131850 Glycine max HOM05D006816 ORTHO05D008666 6.3e-44 183.0 178 57.9
Pp3c11_24610 Physcomitrium patens HOM05D006816 ORTHO05D008666 7.0e-43 179.5 542 30.1
HPP92_023363 Vanilla planifolia HOM05D006816 ORTHO05D008666 5.5e-32 143.3 133 55.6
Psat3g153160 Pisum sativum HOM05D006816 ORTHO05D008517 1.0e-30 139.0 141 55.3
CBR_g52389 Chara braunii HOM05D006816 ORTHO05D008666 3.0e-30 137.5 327 30.6
Psat3g153200 Pisum sativum HOM05D006816 ORTHO05D008666 1.5e-29 135.2 131 56.5
Psat4g077560 Pisum sativum HOM05D006816 ORTHO05D008666 1.7e-28 131.7 98 68.4
COL.COLO4_35805 Corchorus olitorius HOM05D006816 ORTHO05D008666 4.8e-28 130.2 97 64.9
CDE09G0157 Ceratophyllum demersum HOM05D006816 ORTHO05D008666 8.6e-25 119.4 162 43.8
Psat2g121560 Pisum sativum HOM05D006816 ORTHO05D008666 2.5e-24 117.9 157 46.5
FvH4_4g35670 Fragaria vesca HOM05D006816 ORTHO05D008666 1.4e-22 112.1 64 90.6
FAN22G1065 Fragaria x ananassa HOM05D000247 ORTHO05D000288 2.0e-21 108.2 59 91.5
Actinidia08129 Actinidia chinensis HOM05D006816 ORTHO05D008666 1.3e-20 105.5 81 66.7
Actinidia01355 Actinidia chinensis HOM05D006816 ORTHO05D008666 1.4e-19 102.1 62 79.0
CBR_g52391 Chara braunii HOM05D006816 ORTHO05D008666 1.6e-07 62.0 195 29.7
Atru.chr11.2546 Acer truncatum HOM05D006816 ORTHO05D008666 8.0e-07 59.7 72 50.0


User provided reference genes

Program Settings