Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G1574 Fragaria x ananassa HOM05D003565 ORTHO05D003943 7.7e-75 283.9 159 100.0
FvH4_4g18480 Fragaria vesca HOM05D003565 ORTHO05D003943 6.5e-74 280.8 159 99.4
FAN12G0358 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.5e-73 279.6 159 98.7
FAN17G2113 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.6e-67 259.6 159 92.5
RcHm_v2.0_Chr4g0422991 Rosa chinensis HOM05D003565 ORTHO05D003943 1.5e-57 226.5 157 81.5
MD00G1127800 Malus domestica HOM05D003565 ORTHO05D003943 1.4e-44 183.3 159 67.9
Prupe.1G133600 Prunus persica HOM05D003565 ORTHO05D003943 7.0e-44 181.0 160 67.5
Hma1.2p1_1807F.1_g303350 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 3.5e-43 178.7 157 66.2
Prupe.1G133700 Prunus persica HOM05D003565 ORTHO05D003943 1.7e-42 176.4 152 64.5
Thecc.04G287000 Theobroma cacao HOM05D003565 ORTHO05D003943 5.0e-42 174.9 152 63.8
Dinv29764 Davidia involucrata HOM05D003565 ORTHO05D003943 8.6e-42 174.1 152 66.4
GSVIVG01035140001 Vitis vinifera HOM05D003565 ORTHO05D003943 2.5e-41 172.6 153 65.4
Potri.010G012400 Populus trichocarpa HOM05D003565 ORTHO05D003943 1.2e-40 170.2 153 67.3
Sabra10G0007900 Salix brachista HOM05D003565 ORTHO05D003943 1.4e-39 166.8 153 66.0
vmacro15222 Vaccinium macrocarpon HOM05D003565 ORTHO05D003943 2.0e-38 162.9 152 63.2
Gorai.011G191400 Gossypium raimondii HOM05D003565 ORTHO05D003943 2.2e-37 159.5 152 59.9
Rhsim02G0008000 Rhododendron simsii HOM05D003565 ORTHO05D003943 2.9e-37 159.1 149 62.4
CiPaw.02G081300 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.7e-37 158.7 156 59.0
Duzib151G1023 Durio zibethinus HOM05D003565 ORTHO05D003943 4.9e-37 158.3 152 59.9
Gohir.A10G165200 Gossypium hirsutum HOM05D003565 ORTHO05D003943 4.9e-37 158.3 153 60.8
Gohir.D10G171300 Gossypium hirsutum HOM05D003565 ORTHO05D003943 1.1e-36 157.1 152 59.9
Cpa.g.sc16.191 Carica papaya HOM05D003565 ORTHO05D003943 5.4e-36 154.8 153 57.5
CAN.G261.3 Capsicum annuum HOM05D003565 ORTHO05D003943 7.1e-36 154.5 155 56.8
Peaxi162Scf00246g01219 Petunia axillaris HOM05D003565 ORTHO05D003943 1.6e-35 153.3 154 54.5
SalBow2G0621 Salvia bowleyana HOM05D003565 ORTHO05D003943 1.6e-35 153.3 157 59.9
Actinidia28386 Actinidia chinensis HOM05D003565 ORTHO05D003943 2.7e-35 152.5 154 58.4
CSS0008161 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 2.7e-35 152.5 152 61.2
TAR362G0267 Trochodendron aralioides HOM05D003565 ORTHO05D003943 3.5e-35 152.1 152 59.2
COL.COLO4_13836 Corchorus olitorius HOM05D003565 ORTHO05D003943 2.3e-34 149.4 159 56.6
Sopen01g028300 Solanum pennellii HOM05D003565 ORTHO05D003943 8.6e-34 147.5 159 50.3
Migut.O00777 Erythranthe guttata HOM05D003565 ORTHO05D003943 1.5e-33 146.7 150 56.7
TWI09G1223 Tripterygium wilfordii HOM05D003565 ORTHO05D003943 5.6e-33 144.8 152 57.2
SGA_v2.0_scaffold18G08345 Striga asiatica HOM05D003565 ORTHO05D003943 1.6e-32 143.3 158 55.7
SalBow2G2654 Salvia bowleyana HOM05D003565 ORTHO05D003943 4.7e-32 141.7 155 56.8
Sed0004032 Sechium edule HOM05D003565 ORTHO05D003943 4.7e-32 141.7 151 54.3
MSTRG.10106 Avicennia marina HOM05D003565 ORTHO05D003943 2.3e-31 139.4 153 56.2
Cfa015405 Carpinus fangiana HOM05D003565 ORTHO05D003943 3.1e-31 139.0 154 53.2
PGR004G2879 Punica granatum HOM05D003565 ORTHO05D003943 3.1e-31 139.0 149 53.0
THA.LOC104820292 Tarenaya hassleriana HOM05D003565 ORTHO05D003943 4.0e-31 138.7 158 55.7
CsaV3_3G014750 Cucumis sativus L. HOM05D003565 ORTHO05D003943 5.2e-31 138.3 151 51.0
MBI18_g24867_MAGBIO Magnolia biondii HOM05D003565 ORTHO05D003943 6.8e-31 137.9 152 56.6
PGSC0003DMG400011334 Solanum tuberosum HOM05D003565 ORTHO05D003943 1.5e-30 136.7 147 50.3
Solyc01g066680.3 Solanum lycopersicum HOM05D003565 ORTHO05D003943 2.0e-30 136.3 160 47.5
MELO3C006673.2 Cucumis melo HOM05D003565 ORTHO05D003943 5.8e-30 134.8 149 49.0
HanXRQChr13g0420001 Helianthus annuus HOM05D003565 ORTHO05D003943 5.8e-30 134.8 152 53.3
Cc03_g01690 Coffea canephora HOM05D003565 ORTHO05D003943 7.6e-30 134.4 151 51.7
CiPaw.02G081400 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.3e-29 133.7 155 52.9
CiPaw.02G081500 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.3e-29 133.7 155 52.9
Nitab4.5_0000513g0180 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.7e-29 133.3 151 51.7
PSO210G5566 Papaver somniferum HOM05D003565 ORTHO05D003943 2.9e-29 132.5 155 55.5
ClCG05G006170 Citrullus lanatus HOM05D003565 ORTHO05D003943 4.9e-29 131.7 154 48.1
CANSAT78G1552 Cannabis sativa HOM05D003565 ORTHO05D003943 1.1e-28 130.6 146 54.8
PSO832G2395 Papaver somniferum HOM05D003565 ORTHO05D003943 1.1e-28 130.6 155 55.5
CiPaw.02G058900 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.9e-28 129.8 158 52.5
FAN12G0988 Fragaria x ananassa HOM05D003565 ORTHO05D003943 3.2e-28 129.0 160 52.5
Haze_01182 Corylus avellana HOM05D003565 ORTHO05D003943 4.1e-28 128.6 146 52.7
ECA240G0767 Erigeron canadensis HOM05D003565 ORTHO05D003943 4.1e-28 128.6 146 50.7
DCAR_027062 Daucus carota HOM05D003565 ORTHO05D003943 7.1e-28 127.9 154 49.4
DCAR_027064 Daucus carota HOM05D003565 ORTHO05D003943 7.1e-28 127.9 154 49.4
CSS0017850 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 1.6e-27 126.7 152 55.9
RcHm_v2.0_Chr4g0422901 Rosa chinensis HOM05D003565 ORTHO05D003943 2.7e-27 125.9 150 51.3
Nitab4.5_0005362g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 4.6e-27 125.2 148 51.4
Oeu064291.1 Olea europaea HOM05D003565 ORTHO05D003943 4.6e-27 125.2 162 47.5
FAN12G2280 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.0e-26 124.0 160 50.6
CiPaw.02G059200 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.7e-26 123.2 158 50.0
PGR004G0277 Punica granatum HOM05D003565 ORTHO05D003943 1.7e-26 123.2 149 49.0
PGR004G2171 Punica granatum HOM05D003565 ORTHO05D003943 1.7e-26 123.2 149 49.0
Lsat_1_v5_gn_6_95321 Lactuca sativa HOM05D003565 ORTHO05D003943 3.0e-26 122.5 147 49.7
Actinidia14291 Actinidia chinensis HOM05D003565 ORTHO05D003943 6.6e-26 121.3 151 51.0
AL3G29580 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 5.6e-25 118.2 174 45.4
FvH4_4g18430 Fragaria vesca HOM05D003565 ORTHO05D003943 5.6e-25 118.2 159 49.7
Aa31LG8G3780 Aethionema arabicum HOM05D003565 ORTHO05D003943 1.6e-24 116.7 117 57.3
AT3G16660 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 1.6e-24 116.7 162 48.1
Carub.0003s1639 Capsella rubella HOM05D003565 ORTHO05D003943 1.6e-24 116.7 130 50.8
BcaC09g48620 Brassica carinata HOM05D003565 ORTHO05D003943 2.1e-24 116.3 157 48.4
Cfa021269 Carpinus fangiana HOM05D003565 ORTHO05D003943 3.1e-23 112.5 158 43.0
Glyma.09G043500 Glycine max HOM05D003565 ORTHO05D003943 4.0e-23 112.1 148 48.6
Lalb_Chr15g0083411 Lupinus albus HOM05D003565 ORTHO05D003943 4.0e-23 112.1 147 49.7
CARHR091910 Cardamine hirsuta HOM05D003565 ORTHO05D003943 5.2e-23 111.7 159 45.3
Eucgr.H03941 Eucalyptus grandis HOM05D003565 ORTHO05D003943 3.4e-22 109.0 155 45.8
Ciclev10006409m.g Citrus clementina HOM05D003565 ORTHO05D003943 5.8e-22 108.2 152 50.7
Ciclev10006885m.g Citrus clementina HOM05D003565 ORTHO05D003943 7.6e-22 107.8 150 48.0
QL06p009817 Quercus lobata HOM05D003565 ORTHO05D003943 7.6e-22 107.8 157 47.1
Cfa015408 Carpinus fangiana HOM05D003565 ORTHO05D003943 2.2e-21 106.3 155 49.0
FAN17G0998 Fragaria x ananassa HOM05D003565 ORTHO05D003943 2.2e-21 106.3 160 43.1
Sed0026730 Sechium edule HOM05D003565 ORTHO05D003943 3.8e-21 105.5 126 46.0
CiPaw.02G081600 Carya illinoinensis HOM05D003565 ORTHO05D003943 8.4e-21 104.4 120 48.3
Nitab4.5_0000194g0060 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.1e-20 104.0 149 43.0
MELO3C035189.2 Cucumis melo HOM05D003565 ORTHO05D003943 4.2e-20 102.1 145 41.4
CiPaw.02G059300 Carya illinoinensis HOM05D003565 ORTHO05D003943 5.4e-20 101.7 136 51.5
Lj6g0014140 Lotus japonicus HOM05D003565 ORTHO05D003943 7.1e-20 101.3 148 45.3
Nitab4.5_0003949g0040 Nicotiana tabacum HOM05D003565 ORTHO05D003943 9.3e-20 100.9 159 44.0
HanXRQChr08g0214541 Helianthus annuus HOM05D003565 ORTHO05D003943 2.7e-19 99.4 135 45.9
Medtr2g436350 Medicago truncatula HOM05D003565 ORTHO05D003943 2.7e-19 99.4 150 40.7
Nitab4.5_0003949g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.7e-19 99.4 159 43.4
QL06p009717 Quercus lobata HOM05D003565 ORTHO05D003943 3.5e-19 99.0 158 43.7
QL93p0060_0003 Quercus lobata HOM05D003565 ORTHO05D003943 4.6e-19 98.6 158 43.7
PGR004G2038 Punica granatum HOM05D003565 ORTHO05D003943 6.0e-19 98.2 151 43.7
QL06p009778 Quercus lobata HOM05D003565 ORTHO05D003943 6.0e-19 98.2 158 43.7
VMungo1309G1767 Vigna mungo HOM05D003565 ORTHO05D003943 6.0e-19 98.2 136 46.3
A01p37210 Brassica napus HOM05D003565 ORTHO05D003943 1.0e-18 97.4 155 43.2
Psat1g155160 Pisum sativum HOM05D003565 ORTHO05D003943 1.3e-18 97.1 150 41.3
Phvul.009G249400 Phaseolus vulgaris HOM05D003565 ORTHO05D003943 1.7e-18 96.7 146 43.8
QL06p009754 Quercus lobata HOM05D003565 ORTHO05D003943 1.7e-18 96.7 158 42.4
QL93p0060_0027 Quercus lobata HOM05D003565 ORTHO05D003943 1.7e-18 96.7 158 43.0
QL06p009790 Quercus lobata HOM05D003565 ORTHO05D003943 3.9e-18 95.5 154 43.5
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 5.1e-18 95.1 123 45.5
ATR0796G036 Amborella trichopoda HOM05D003565 ORTHO05D003943 6.6e-18 94.7 153 45.8
BcaB04g20866 Brassica carinata HOM05D003565 ORTHO05D003943 6.6e-18 94.7 163 42.9
QL06p009796 Quercus lobata HOM05D003565 ORTHO05D003943 6.6e-18 94.7 147 45.6
QL06p009725 Quercus lobata HOM05D003565 ORTHO05D003943 8.7e-18 94.4 110 51.8
CsaV3_6G023960 Cucumis sativus L. HOM05D000549 ORTHO05D001527 1.9e-17 93.2 123 44.7
A01p37230 Brassica napus HOM05D003565 ORTHO05D003943 4.3e-17 92.0 166 42.2
QL06p009701 Quercus lobata HOM05D003565 ORTHO05D003943 4.3e-17 92.0 158 41.8
QL93p0060_0019 Quercus lobata HOM05D003565 ORTHO05D003943 4.3e-17 92.0 158 41.8
CARHR150150 Cardamine hirsuta HOM05D003565 ORTHO05D003943 5.6e-17 91.7 159 43.4
FAN07G1512 Fragaria x ananassa HOM05D003565 ORTHO05D003943 5.6e-17 91.7 63 87.3
QL06p009739 Quercus lobata HOM05D003565 ORTHO05D003943 7.3e-17 91.3 158 41.8
QL93p0060_0047 Quercus lobata HOM05D003565 ORTHO05D003943 7.3e-17 91.3 158 41.8
CsaV3_6G024110 Cucumis sativus L. HOM05D000549 ORTHO05D003943 9.6e-17 90.9 123 43.9
TPR.G31280 Trifolium pratense HOM05D003565 ORTHO05D003943 9.6e-17 90.9 115 47.0
Nitab4.5_0000493g0100 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.1e-16 89.7 159 40.9
QL06p009664 Quercus lobata HOM05D003565 ORTHO05D003943 3.6e-16 89.0 158 41.8
Carub.0003s1640 Capsella rubella HOM05D003565 ORTHO05D003943 4.8e-16 88.6 146 41.1
Carub.0002s1293 Capsella rubella HOM05D003565 ORTHO05D003943 6.2e-16 88.2 146 40.4
HanXRQChr03g0089351 Helianthus annuus HOM05D003565 ORTHO05D003943 1.1e-15 87.4 152 38.8
Thhalv10021613m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 2.4e-15 86.3 122 45.9
HanXRQChr03g0089401 Helianthus annuus HOM05D003565 ORTHO05D003943 2.4e-15 86.3 161 37.9
AL3G29590 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 3.1e-15 85.9 146 42.5
AT3G16670 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 3.1e-15 85.9 156 39.1
HPP92_006917 Vanilla planifolia HOM05D003565 ORTHO05D003943 3.1e-15 85.9 159 42.8
Thhalv10021522m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 6.9e-15 84.7 160 38.8
C01p47670 Brassica napus HOM05D003565 ORTHO05D003943 2.0e-14 83.2 171 38.6
HanXRQChr03g0088811 Helianthus annuus HOM05D003565 ORTHO05D003943 3.4e-14 82.4 144 38.9
Nitab4.5_0000194g0050 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.4e-14 82.4 123 43.1
BraA01t03825Z Brassica rapa HOM05D003565 ORTHO05D003943 5.8e-14 81.6 180 36.1
CARHR091920 Cardamine hirsuta HOM05D003565 ORTHO05D003943 5.8e-14 81.6 157 42.7
Sp3g14950 Schrenkiella parvula HOM05D003565 ORTHO05D003943 5.8e-14 81.6 121 43.0
HanXRQChr03g0088801 Helianthus annuus HOM05D003565 ORTHO05D003943 7.6e-14 81.3 150 40.7
A01p37640 Brassica napus HOM05D003565 ORTHO05D003943 9.9e-14 80.9 124 41.9
BolC1t04739H Brassica oleracea HOM05D003565 ORTHO05D003943 9.9e-14 80.9 124 41.9
Oeu027152.1 Olea europaea HOM05D003565 ORTHO05D003943 1.7e-13 80.1 154 37.0
CARHR091930 Cardamine hirsuta HOM05D003565 ORTHO05D003943 2.2e-13 79.7 151 42.4
BraA01t03781Z Brassica rapa HOM05D003565 ORTHO05D003943 2.9e-13 79.3 161 37.9
BcaB04g18928 Brassica carinata HOM05D003565 ORTHO05D003943 3.8e-13 79.0 148 39.9
A03p40060 Brassica napus HOM05D003565 ORTHO05D003943 4.9e-13 78.6 143 37.8
BraA03t13156Z Brassica rapa HOM05D003565 ORTHO05D003943 4.9e-13 78.6 143 37.8
CARHR150160 Cardamine hirsuta HOM05D003565 ORTHO05D003943 4.9e-13 78.6 151 41.7
HanXRQChr01g0002181 Helianthus annuus HOM05D003565 ORTHO05D003943 6.4e-13 78.2 147 33.3
HanXRQChr05g0130321 Helianthus annuus HOM05D003565 ORTHO05D003943 8.4e-13 77.8 149 34.2
BraA01t03783Z Brassica rapa HOM05D003565 ORTHO05D003943 1.4e-12 77.0 172 37.8
Oeu027151.1 Olea europaea HOM05D003565 ORTHO05D003943 1.9e-12 76.6 146 36.3
CiPaw.02G059100 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.2e-12 75.9 110 50.9
DCAR_030515 Daucus carota HOM05D003565 ORTHO05D003943 3.2e-12 75.9 140 40.0
BcaC09g48665 Brassica carinata HOM05D003565 ORTHO05D003943 2.7e-11 72.8 161 37.9
C01p47150 Brassica napus HOM05D003565 ORTHO05D003943 2.7e-11 72.8 161 37.9
CsaV3_3G014760 Cucumis sativus L. HOM05D003565 ORTHO05D003943 2.7e-11 72.8 111 39.6
C03p48610 Brassica napus HOM05D003565 ORTHO05D003943 3.5e-11 72.4 143 37.1
BolC1t04684H Brassica oleracea HOM05D003565 ORTHO05D003943 3.5e-11 72.4 162 37.7
HanXRQChr08g0214531 Helianthus annuus HOM05D003565 ORTHO05D003943 6.0e-11 71.6 149 33.6
BcaC01g03788 Brassica carinata HOM05D003565 ORTHO05D003943 7.9e-11 71.2 143 37.1
CsaV3_3G014770 Cucumis sativus L. HOM05D003565 ORTHO05D003943 1.7e-10 70.1 154 33.1
Migut.N02472 Erythranthe guttata HOM05D003565 ORTHO05D003943 1.7e-10 70.1 159 37.1
QL06p009834 Quercus lobata HOM05D003565 ORTHO05D003943 2.3e-10 69.7 152 34.9
QL06p009884 Quercus lobata HOM05D003565 ORTHO05D003943 2.3e-10 69.7 144 38.2
DCAR_022430 Daucus carota HOM05D003565 ORTHO05D003943 3.0e-10 69.3 165 39.4
Oeu026321.1 Olea europaea HOM05D003565 ORTHO05D003943 6.6e-10 68.2 112 42.0
DCAR_030517 Daucus carota HOM05D003565 ORTHO05D003943 8.7e-10 67.8 164 37.2
ECA247G1649 Erigeron canadensis HOM05D023078 ORTHO05D003943 1.1e-09 67.4 148 37.2
DCAR_027061 Daucus carota HOM05D003565 ORTHO05D003943 3.3e-09 65.9 116 43.1
arahy.Tifrunner.gnm1.ann1.VE1P60 Arachis hypogaea HOM05D003565 ORTHO05D003943 7.3e-09 64.7 98 44.9
arahy.Tifrunner.gnm1.ann1.Q570SP Arachis hypogaea HOM05D003565 ORTHO05D003943 9.6e-09 64.3 92 45.7
DCAR_002472 Daucus carota HOM05D003565 ORTHO05D003943 1.6e-08 63.5 156 37.8
Nitab4.5_0000930g0010 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.6e-08 63.5 160 35.0
Hma1.2p1_0078F.1_g040470 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 2.1e-08 63.2 163 35.6
HanXRQChr03g0089391 Helianthus annuus HOM05D003565 ORTHO05D003943 3.6e-08 62.4 126 41.3
Nitab4.5_0000493g0090 Nicotiana tabacum HOM05D003565 ORTHO05D003943 4.8e-08 62.0 148 31.8
Nitab4.5_0000493g0080 Nicotiana tabacum HOM05D003565 ORTHO05D003943 8.1e-08 61.2 148 33.8
SGA_v2.0_scaffold177G39437 Striga asiatica HOM05D003565 ORTHO05D003943 8.1e-08 61.2 151 32.5
Os07g0674400 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 1.4e-07 60.5 145 37.9
Os03g0341600 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 2.4e-07 59.7 140 36.4
FvH4_4g18450 Fragaria vesca HOM05D057627 ORTHO05D046375 3.1e-07 59.3 149 34.9
Zm00001eb111390 Zea mays HOM05D003565 ORTHO05D003943 3.1e-07 59.3 154 36.4
ECA234G1138 Erigeron canadensis HOM05D023078 ORTHO05D003943 6.9e-07 58.2 140 39.3
QL06p009948 Quercus lobata HOM05D003565 ORTHO05D003943 9.0e-07 57.8 144 36.1
Zm00001eb016410 Zea mays HOM05D003565 ORTHO05D003943 1.5e-06 57.0 139 38.8


User provided reference genes

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