Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G1471 Fragaria x ananassa HOM05D006591 ORTHO05D007861 3.9e-46 189.1 239 100.0
FvH4_4g30470 Fragaria vesca HOM05D006591 ORTHO05D007861 2.2e-33 146.7 108 98.1
FAN17G0139 Fragaria x ananassa HOM05D006591 ORTHO05D007861 3.8e-33 146.0 108 97.2
FAN22G1196 Fragaria x ananassa HOM05D006591 ORTHO05D007861 7.1e-32 141.7 108 95.4
FAN07G2187 Fragaria x ananassa HOM05D006591 ORTHO05D007861 9.3e-32 141.4 107 95.3
RcHm_v2.0_Chr4g0438821 Rosa chinensis HOM05D006591 ORTHO05D007861 1.8e-27 127.1 108 86.1
MD13G1065800 Malus domestica HOM05D006591 ORTHO05D007861 1.5e-18 97.4 111 72.1
MD16G1064400 Malus domestica HOM05D006591 ORTHO05D007861 2.2e-17 93.6 111 71.2
Psat2g128080 Pisum sativum HOM05D006591 ORTHO05D007861 8.4e-17 91.7 108 62.0
Prupe.1G282400 Prunus persica HOM05D006591 ORTHO05D007861 1.4e-16 90.9 105 69.5
TWI75G0359 Tripterygium wilfordii HOM05D006591 ORTHO05D007861 9.3e-16 88.2 106 66.0
TWI79G1606 Tripterygium wilfordii HOM05D006591 ORTHO05D007861 9.3e-16 88.2 106 61.3
Sabra10G0122800 Salix brachista HOM05D006591 ORTHO05D007861 1.2e-15 87.8 101 74.3
BcaB07g30669 Brassica carinata HOM05D006591 ORTHO05D007861 2.7e-15 86.7 104 64.4
BcaC04g21487 Brassica carinata HOM05D006591 ORTHO05D007861 2.7e-15 86.7 104 47.1
C09p31230 Brassica napus HOM05D006591 ORTHO05D007861 2.7e-15 86.7 104 47.1
BolC9t55979H Brassica oleracea HOM05D006591 ORTHO05D007861 2.7e-15 86.7 104 47.1
Atru.chr11.1685 Acer truncatum HOM05D006591 ORTHO05D007861 3.5e-15 86.3 103 68.9
CANSAT64G0984 Cannabis sativa HOM05D006591 ORTHO05D007861 3.5e-15 86.3 111 61.3
Cfa008903 Carpinus fangiana HOM05D006591 ORTHO05D007861 3.5e-15 86.3 108 63.9
PGR119G1238 Punica granatum HOM05D006591 ORTHO05D007861 4.6e-15 85.9 108 48.1
Sopen05g007420 Solanum pennellii HOM05D006591 ORTHO05D007861 4.6e-15 85.9 108 63.0
CAN.G1340.9 Capsicum annuum HOM05D006591 ORTHO05D007861 6.0e-15 85.5 108 61.1
Solyc05g012590.4 Solanum lycopersicum HOM05D006591 ORTHO05D007861 6.0e-15 85.5 108 50.0
PGSC0003DMG400028326 Solanum tuberosum HOM05D006591 ORTHO05D007861 6.0e-15 85.5 108 63.0
arahy.Tifrunner.gnm1.ann1.74ATFD Arachis hypogaea HOM05D006591 ORTHO05D007861 7.9e-15 85.1 108 48.1
Cc11_g12350 Coffea canephora HOM05D006591 ORTHO05D007861 7.9e-15 85.1 115 48.7
Potri.010G161300 Populus trichocarpa HOM05D006591 ORTHO05D007861 1.0e-14 84.7 233 79.4
QL03p070967 Quercus lobata HOM05D006591 ORTHO05D007861 1.0e-14 84.7 112 47.3
A09p24440 Brassica napus HOM05D006591 ORTHO05D007861 1.8e-14 84.0 104 61.5
BraA09t38037Z Brassica rapa HOM05D006591 ORTHO05D007861 1.8e-14 84.0 104 61.5
MELO3C002930.2 Cucumis melo HOM05D006591 ORTHO05D007861 1.8e-14 84.0 110 48.2
TPR.G2283 Trifolium pratense HOM05D006591 ORTHO05D007861 2.3e-14 83.6 108 48.1
Peaxi162Scf00314g00027 Petunia axillaris HOM05D006591 ORTHO05D007861 3.0e-14 83.2 95 62.1
Hund25197 Selenicereus undatus HOM05D006591 ORTHO05D007861 3.0e-14 83.2 108 48.1
THA.LOC104801815 Tarenaya hassleriana HOM05D006591 ORTHO05D007861 3.0e-14 83.2 108 63.0
ECA246G1963 Erigeron canadensis HOM05D006591 ORTHO05D007861 3.9e-14 82.8 111 62.2
Thhalv10004832m.g Eutrema salsugineum HOM05D006591 ORTHO05D007861 6.7e-14 82.0 105 45.7
Lalb_Chr10g0098581 Lupinus albus HOM05D006591 ORTHO05D007861 6.7e-14 82.0 114 62.3
Manes.05G107800 Manihot esculenta HOM05D006591 ORTHO05D007861 8.7e-14 81.6 111 63.1
Glyma.02G113900 Glycine max HOM05D006591 ORTHO05D007861 1.1e-13 81.3 111 50.5
Carub.0005s0239 Capsella rubella HOM05D006591 ORTHO05D007861 1.5e-13 80.9 100 66.0
CiPaw.06G090100 Carya illinoinensis HOM05D006591 ORTHO05D007861 1.5e-13 80.9 101 67.3
Oeu028261.1 Olea europaea HOM05D006591 ORTHO05D007861 1.5e-13 80.9 240 53.3
SGA_v2.0_scaffold287G47153 Striga asiatica HOM05D006591 ORTHO05D007861 1.5e-13 80.9 239 58.6
arahy.Tifrunner.gnm1.ann1.09DLU7 Arachis hypogaea HOM05D006591 ORTHO05D007861 1.9e-13 80.5 108 61.1
GSVIVG01012181001 Vitis vinifera HOM05D006591 ORTHO05D007861 1.9e-13 80.5 110 58.2
CsaV3_5G025480 Cucumis sativus L. HOM05D006591 ORTHO05D007861 3.3e-13 79.7 110 65.5
Phvul.002G068900 Phaseolus vulgaris HOM05D006591 ORTHO05D007861 3.3e-13 79.7 110 44.5
Lj2g0025600 Lotus japonicus HOM05D006591 ORTHO05D007861 4.3e-13 79.3 113 55.8
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 5.7e-13 79.0 107 57.0
Migut.E00061 Erythranthe guttata HOM05D006591 ORTHO05D007861 5.7e-13 79.0 98 69.4
PSO017G3262 Papaver somniferum HOM05D006591 ORTHO05D007861 5.7e-13 79.0 113 65.5
vmacro16368 Vaccinium macrocarpon HOM05D006591 ORTHO05D007861 5.7e-13 79.0 109 47.7
Cpa.g.sc1.95 Carica papaya HOM05D006591 ORTHO05D007861 7.4e-13 78.6 102 44.1
Aqoxy3G00449 Aquilegia oxysepala HOM05D006591 ORTHO05D007861 9.7e-13 78.2 109 61.5
COL.COLO4_05797 Corchorus olitorius HOM05D006591 ORTHO05D007861 9.7e-13 78.2 103 46.6
Duzib268G0337 Durio zibethinus HOM05D006591 ORTHO05D007861 1.6e-12 77.4 100 49.0
Sc11g0002290 Simmondsia chinensis HOM05D006591 ORTHO05D007861 1.6e-12 77.4 101 61.4
TPR.G24426 Trifolium pratense HOM05D006591 ORTHO05D007861 1.6e-12 77.4 77 57.1
Ciclev10032613m.g Citrus clementina HOM05D006591 ORTHO05D007861 2.8e-12 76.6 108 55.6
DCAR_027452 Daucus carota HOM05D006591 ORTHO05D007861 2.8e-12 76.6 108 56.5
Lsat_1_v5_gn_3_56260 Lactuca sativa HOM05D006591 ORTHO05D007861 2.8e-12 76.6 116 62.1
Rhsim12G0134100 Rhododendron simsii HOM05D006591 ORTHO05D007861 2.8e-12 76.6 79 57.0
TAR374G1558 Trochodendron aralioides HOM05D006591 ORTHO05D007861 2.8e-12 76.6 113 59.3
Dinv16706 Davidia involucrata HOM05D006591 ORTHO05D007861 3.7e-12 76.3 84 56.0
MSTRG.2323 Avicennia marina HOM05D006591 ORTHO05D007861 6.3e-12 75.5 109 61.5
Nn4g23331 Nelumbo nucifera HOM05D006591 ORTHO05D007861 6.3e-12 75.5 113 57.5
Ca_04911_v3 Cicer arietinum L. HOM05D006591 ORTHO05D007861 1.1e-11 74.7 69 59.4
Sp2g14340 Schrenkiella parvula HOM05D006591 ORTHO05D007861 1.1e-11 74.7 104 61.5
Actinidia19919 Actinidia chinensis HOM05D006591 ORTHO05D007861 1.4e-11 74.3 114 43.0
Medtr5g043640 Medicago truncatula HOM05D006591 ORTHO05D007861 1.4e-11 74.3 77 53.2
Thecc.02G335700 Theobroma cacao HOM05D006591 ORTHO05D007861 1.8e-11 73.9 68 58.8
VMungo1215G0675 Vigna mungo HOM05D006591 ORTHO05D007861 1.8e-11 73.9 110 57.3
Lj3C1032T3 Lonicera japonica HOM05D006591 ORTHO05D007861 3.1e-11 73.2 116 56.9
AL5G13180 Arabidopsis lyrata HOM05D006591 ORTHO05D007861 4.1e-11 72.8 104 60.6
HPP92_018457 Vanilla planifolia HOM05D006591 ORTHO05D007861 4.1e-11 72.8 98 63.3
Haze_11932 Corylus avellana HOM05D006591 ORTHO05D007861 9.0e-11 71.6 134 37.3
CARHR145770 Cardamine hirsuta HOM05D006591 ORTHO05D007861 1.2e-10 71.2 100 63.0
Glyma.01G055500 Glycine max HOM05D006591 ORTHO05D007861 1.2e-10 71.2 111 55.0
Gohir.D05G306200 Gossypium hirsutum HOM05D006591 ORTHO05D007861 2.6e-10 70.1 110 44.5
PSO478G2874 Papaver somniferum HOM05D006591 ORTHO05D007861 3.4e-10 69.7 111 60.4
unitig_22.g5555 Utricularia gibba HOM05D006591 ORTHO05D007861 4.5e-10 69.3 98 62.2
Actinidia31944 Actinidia chinensis HOM05D006591 ORTHO05D007861 5.9e-10 68.9 114 41.2
Gohir.A05G306200 Gossypium hirsutum HOM05D006591 ORTHO05D007861 5.9e-10 68.9 110 43.6
AT2G03430 Arabidopsis thaliana HOM05D006591 ORTHO05D007861 7.7e-10 68.6 109 58.7
Gorai.009G326200 Gossypium raimondii HOM05D006591 ORTHO05D007861 7.7e-10 68.6 100 44.0
CSS0032544 Camellia sinensis var. sinensis HOM05D006591 ORTHO05D007861 1.0e-09 68.2 98 44.9
CDE07G0054 Ceratophyllum demersum HOM05D006591 ORTHO05D007861 1.3e-09 67.8 101 63.4
EL10Ac6g14958 Beta vulgaris HOM05D006591 ORTHO05D007861 3.8e-09 66.2 104 51.9
HanXRQChr17g0545461 Helianthus annuus HOM05D006591 ORTHO05D007861 5.0e-09 65.9 107 50.5
CSS0024373 Camellia sinensis var. sinensis HOM05D006591 ORTHO05D007861 8.5e-09 65.1 69 55.1
CSS0029304 Camellia sinensis var. sinensis HOM05D006591 ORTHO05D007861 1.4e-08 64.3 69 55.1
CSS0002938 Camellia sinensis var. sinensis HOM05D006591 ORTHO05D007861 2.5e-08 63.5 69 55.1
CSS0020090 Camellia sinensis var. sinensis HOM05D006591 ORTHO05D007861 2.5e-08 63.5 69 55.1
Sed0000747 Sechium edule HOM05D006591 ORTHO05D007861 2.5e-08 63.5 56 55.4
AagrBONN_evm.TU.Sc2ySwM_344.1136 Anthoceros agrestis HOM05D006591 ORTHO05D007861 3.2e-08 63.2 98 40.8
ATR0111G005 Amborella trichopoda HOM05D006591 ORTHO05D007861 7.2e-08 62.0 67 47.8
Eucgr.G02461 Eucalyptus grandis HOM05D006591 ORTHO05D007861 2.1e-07 60.5 71 50.7
Mapoly0001s0139 Marchantia polymorpha HOM05D006591 ORTHO05D007861 2.1e-07 60.5 104 38.5
Zm00001eb214530 Zea mays HOM05D006591 ORTHO05D007861 2.7e-07 60.1 109 56.0
Nitab4.5_0000334g0240 Nicotiana tabacum HOM05D006591 ORTHO05D007861 6.1e-07 58.9 107 40.2
Pp3c6_21850 Physcomitrium patens HOM05D006591 ORTHO05D007861 1.0e-06 58.2 232 64.2
Ah.02g126600 Amaranthus hybridus HOM05D006591 ORTHO05D007861 5.1e-06 55.8 61 54.1
Peaxi162Scf00314g00026 Petunia axillaris HOM05D033978 ORTHO05D024718 6.7e-06 55.5 31 80.6
EL10Ac6g14960 Beta vulgaris HOM05D006591 ORTHO05D007861 8.8e-06 55.1 108 34.3
C06p01310 Brassica napus HOM05D006591 ORTHO05D007861 8.8e-06 55.1 56 53.6
SEGI_35394 Sequoiadendron giganteum HOM05D006591 ORTHO05D007861 8.8e-06 55.1 66 48.5


User provided reference genes

Program Settings