Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G1418 Fragaria x ananassa HOM05D000439 ORTHO05D006172 2.3e-85 318.9 169 100.0
FAN09G4271 Fragaria x ananassa HOM05D000643 ORTHO05D006172 9.7e-60 233.8 126 97.6
FAN07G0650 Fragaria x ananassa HOM05D000439 ORTHO05D006172 1.3e-59 233.4 127 96.9
FAN17G2341 Fragaria x ananassa HOM05D000439 ORTHO05D006172 2.8e-59 232.3 127 96.1
FAN22G2148 Fragaria x ananassa HOM05D000439 ORTHO05D006172 2.8e-59 232.3 127 96.1
FAN05G3914 Fragaria x ananassa HOM05D000439 ORTHO05D006172 4.1e-58 228.4 129 94.6
FvH4_4g15550 Fragaria vesca HOM05D000439 ORTHO05D006172 7.0e-58 227.6 127 94.5
FAN12G2572 Fragaria x ananassa HOM05D000439 ORTHO05D006172 7.0e-58 227.6 127 94.5
RcHm_v2.0_Chr4g0416211 Rosa chinensis HOM05D000439 ORTHO05D006172 1.7e-56 223.0 127 91.3
Prupe.1G013700 Prunus persica HOM05D000439 ORTHO05D006172 1.2e-46 190.3 125 79.2
MD13G1193100 Malus domestica HOM05D000439 ORTHO05D006172 1.0e-45 187.2 127 75.6
MD16G1194000 Malus domestica HOM05D000439 ORTHO05D006172 4.0e-45 185.3 127 75.6
CiPaw.01G166100 Carya illinoinensis HOM05D000439 ORTHO05D006172 1.9e-39 166.4 125 68.0
MELO3C012651.2 Cucumis melo HOM05D000439 ORTHO05D006172 1.2e-38 163.7 138 61.6
ClCG06G006240 Citrullus lanatus HOM05D000439 ORTHO05D006172 1.6e-38 163.3 138 61.6
CsaV3_7G022490 Cucumis sativus L. HOM05D000439 ORTHO05D006172 2.1e-38 162.9 138 61.6
Cfa015646 Carpinus fangiana HOM05D000439 ORTHO05D006172 2.8e-38 162.5 127 66.1
Haze_00899 Corylus avellana HOM05D000439 ORTHO05D006172 2.8e-38 162.5 127 65.4
QL06p002460 Quercus lobata HOM05D000439 ORTHO05D006172 8.0e-38 161.0 127 66.9
Sed0018003 Sechium edule HOM05D000439 ORTHO05D006172 1.5e-36 156.8 140 59.3
TAR365G0584 Trochodendron aralioides HOM05D000439 ORTHO05D006172 1.7e-35 153.3 132 62.1
Dinv13996 Davidia involucrata HOM05D000439 ORTHO05D006172 4.9e-35 151.8 127 63.8
CANSAT78G0526 Cannabis sativa HOM05D000439 ORTHO05D006172 1.8e-34 149.8 127 62.2
FAN10G0520 Fragaria x ananassa HOM05D000439 ORTHO05D006172 1.2e-33 147.1 80 96.2
Aqoxy5G00467 Aquilegia oxysepala HOM05D000439 ORTHO05D006172 1.6e-33 146.7 129 60.5
TAR636G3313 Trochodendron aralioides HOM05D000439 ORTHO05D006172 1.0e-32 144.1 129 58.1
Manes.15G029200 Manihot esculenta HOM05D000439 ORTHO05D006172 2.9e-32 142.5 134 59.0
Hund12129 Selenicereus undatus HOM05D000439 ORTHO05D006172 6.6e-32 141.4 127 56.7
Eucgr.H03480 Eucalyptus grandis HOM05D000439 ORTHO05D006172 1.1e-31 140.6 127 59.1
Cpa.g.sc58.106 Carica papaya HOM05D000439 ORTHO05D006172 1.5e-31 140.2 130 60.0
CSS0007127 Camellia sinensis var. sinensis HOM05D000439 ORTHO05D006172 1.9e-31 139.8 134 58.2
Manes.03G178500 Manihot esculenta HOM05D000439 ORTHO05D006172 1.9e-31 139.8 134 58.2
AUR62034747 Chenopodium quinoa HOM05D000439 ORTHO05D006172 2.5e-31 139.4 130 57.7
AUR62033634 Chenopodium quinoa HOM05D000439 ORTHO05D006172 4.3e-31 138.7 130 57.7
Medtr1g103710 Medicago truncatula HOM05D000439 ORTHO05D006172 7.3e-31 137.9 138 53.6
Sabra08G0116600 Salix brachista HOM05D000439 ORTHO05D006172 9.5e-31 137.5 132 56.8
TWI73G0578 Tripterygium wilfordii HOM05D000439 ORTHO05D006172 9.5e-31 137.5 133 56.4
AL3G36750 Arabidopsis lyrata HOM05D000439 ORTHO05D006172 1.2e-30 137.1 130 56.9
Potri.008G153000 Populus trichocarpa HOM05D000439 ORTHO05D006172 1.2e-30 137.1 132 56.8
Carub.0003s2262 Capsella rubella HOM05D000439 ORTHO05D006172 1.6e-30 136.7 132 56.1
Lsat_1_v5_gn_7_67240 Lactuca sativa HOM05D000439 ORTHO05D006172 1.6e-30 136.7 129 57.4
THA.LOC104803025 Tarenaya hassleriana HOM05D000439 ORTHO05D006172 1.6e-30 136.7 129 56.6
CARHR098350 Cardamine hirsuta HOM05D000439 ORTHO05D006172 2.8e-30 136.0 136 55.1
Thhalv10020440m.g Eutrema salsugineum HOM05D000439 ORTHO05D006172 2.8e-30 136.0 128 57.8
Aa31LG8G9010 Aethionema arabicum HOM05D000439 ORTHO05D006172 3.6e-30 135.6 131 55.0
Nn1g02321 Nelumbo nucifera HOM05D000439 ORTHO05D006172 6.1e-30 134.8 127 54.3
PGR004G1056 Punica granatum HOM05D000439 ORTHO05D006172 8.0e-30 134.4 140 54.3
Sp3g20210 Schrenkiella parvula HOM05D000439 ORTHO05D006172 1.0e-29 134.0 127 56.7
THA.LOC104809078 Tarenaya hassleriana HOM05D000439 ORTHO05D006172 1.0e-29 134.0 129 56.6
BcaB04g20517 Brassica carinata HOM05D000439 ORTHO05D006172 1.4e-29 133.7 123 60.2
CARHR221480 Cardamine hirsuta HOM05D000439 ORTHO05D006172 1.4e-29 133.7 128 55.5
AT3G22440 Arabidopsis thaliana HOM05D000439 ORTHO05D006172 1.8e-29 133.3 131 55.0
EL10As3g23288 Beta vulgaris HOM05D000439 ORTHO05D006172 1.8e-29 133.3 130 56.2
THA.LOC104822271 Tarenaya hassleriana HOM05D000439 ORTHO05D006172 1.8e-29 133.3 129 55.8
BcaC09g49175 Brassica carinata HOM05D000439 ORTHO05D006172 2.3e-29 132.9 123 60.2
C01p41830 Brassica napus HOM05D000439 ORTHO05D006172 2.3e-29 132.9 123 60.2
BolC1t04137H Brassica oleracea HOM05D000439 ORTHO05D006172 2.3e-29 132.9 123 60.2
Gorai.005G042900 Gossypium raimondii HOM05D000439 ORTHO05D006172 2.3e-29 132.9 126 55.6
Rhsim02G0025300 Rhododendron simsii HOM05D000439 ORTHO05D006172 2.3e-29 132.9 131 54.2
TPR.G5544 Trifolium pratense HOM05D000439 ORTHO05D006172 2.3e-29 132.9 140 51.4
TWI09G0034 Tripterygium wilfordii HOM05D000439 ORTHO05D006172 2.3e-29 132.9 130 56.9
AT4G14900 Arabidopsis thaliana HOM05D000439 ORTHO05D006172 3.1e-29 132.5 124 56.5
Gohir.A09G215900 Gossypium hirsutum HOM05D000439 ORTHO05D006172 3.1e-29 132.5 125 54.4
Gohir.D09G218300 Gossypium hirsutum HOM05D000439 ORTHO05D006172 3.1e-29 132.5 125 54.4
Gorai.006G239300 Gossypium raimondii HOM05D000439 ORTHO05D006172 3.1e-29 132.5 125 54.4
Lj5g0001183 Lotus japonicus HOM05D000439 ORTHO05D006172 4.0e-29 132.1 143 53.1
Lsat_1_v5_gn_9_80141 Lactuca sativa HOM05D000439 ORTHO05D006172 5.2e-29 131.7 128 57.8
Duzib212G0312 Durio zibethinus HOM05D000439 ORTHO05D006172 6.8e-29 131.3 126 54.8
Gohir.A02G032200 Gossypium hirsutum HOM05D000439 ORTHO05D006172 6.8e-29 131.3 126 54.8
Ah.04g154630 Amaranthus hybridus HOM05D000439 ORTHO05D006172 8.9e-29 131.0 131 55.7
Psat6g207360 Pisum sativum HOM05D000439 ORTHO05D006172 1.2e-28 130.6 140 50.7
CSS0012474 Camellia sinensis var. sinensis HOM05D000439 ORTHO05D006172 1.5e-28 130.2 127 55.9
Thhalv10024868m.g Eutrema salsugineum HOM05D000439 ORTHO05D006172 1.5e-28 130.2 126 56.3
Sopen09g030890 Solanum pennellii HOM05D000439 ORTHO05D006172 1.5e-28 130.2 127 55.9
PGSC0003DMG400030083 Solanum tuberosum HOM05D000439 ORTHO05D006172 2.0e-28 129.8 127 55.9
TWI53G0069 Tripterygium wilfordii HOM05D000439 ORTHO05D006172 2.0e-28 129.8 130 54.6
AL7G40950 Arabidopsis lyrata HOM05D000439 ORTHO05D006172 3.4e-28 129.0 124 53.2
Duzib052G0960 Durio zibethinus HOM05D000439 ORTHO05D006172 3.4e-28 129.0 126 51.6
Solyc09g076050.4 Solanum lycopersicum HOM05D000439 ORTHO05D006172 4.4e-28 128.6 127 55.1
Peaxi162Scf00092g01013 Petunia axillaris HOM05D000439 ORTHO05D006172 9.8e-28 127.5 132 54.5
Ciclev10004753m.g Citrus clementina HOM05D000439 ORTHO05D006172 1.3e-27 127.1 125 53.6
arahy.Tifrunner.gnm1.ann1.JR532J Arachis hypogaea HOM05D000439 ORTHO05D006172 2.9e-27 125.9 132 52.3
arahy.Tifrunner.gnm1.ann1.Y59G7X Arachis hypogaea HOM05D000439 ORTHO05D006172 2.9e-27 125.9 132 52.3
A01p32650 Brassica napus HOM05D000439 ORTHO05D006172 2.9e-27 125.9 125 56.8
Hma1.2p1_0602F.1_g187340 Hydrangea macrophylla HOM05D000439 ORTHO05D006172 2.9e-27 125.9 143 50.3
Atru.chr4.2461 Acer truncatum HOM05D000439 ORTHO05D006172 3.7e-27 125.6 131 51.1
Sp7g13040 Schrenkiella parvula HOM05D000439 ORTHO05D006172 1.1e-26 124.0 135 51.1
HanXRQChr06g0181431 Helianthus annuus HOM05D000439 ORTHO05D006172 2.4e-26 122.9 127 56.7
COL.COLO4_21479 Corchorus olitorius HOM05D000439 ORTHO05D006172 5.4e-26 121.7 131 51.1
Carub.0007s2721 Capsella rubella HOM05D000439 ORTHO05D006172 9.2e-26 120.9 130 51.5
CAN.G490.11 Capsicum annuum HOM05D000439 ORTHO05D006172 1.2e-25 120.6 120 53.3
Phvul.007G057500 Phaseolus vulgaris HOM05D000439 ORTHO05D006172 1.2e-25 120.6 125 48.8
BraA01t03393Z Brassica rapa HOM05D000439 ORTHO05D006172 1.6e-25 120.2 125 55.2
Nitab4.5_0004258g0030 Nicotiana tabacum HOM05D000439 ORTHO05D006172 2.0e-25 119.8 122 54.1
PSO210G3898 Papaver somniferum HOM05D000439 ORTHO05D006172 6.0e-25 118.2 131 50.4
SHI00449 Sapria himalayana HOM05D000439 ORTHO05D006172 1.0e-24 117.5 134 47.8
DCAR_027218 Daucus carota HOM05D000439 ORTHO05D006172 1.3e-24 117.1 125 50.4
Nitab4.5_0000043g0100 Nicotiana tabacum HOM05D000439 ORTHO05D006172 1.3e-24 117.1 122 52.5
PSO832G2628 Papaver somniferum HOM05D000439 ORTHO05D006172 1.3e-24 117.1 131 50.4
Ca_10896_v3 Cicer arietinum L. HOM05D000439 ORTHO05D006172 2.3e-24 116.3 139 48.2
Glyma.20G146100 Glycine max HOM05D000439 ORTHO05D006172 3.9e-24 115.5 124 50.0
Sc25g0004360 Simmondsia chinensis HOM05D000439 ORTHO05D006172 3.9e-24 115.5 107 57.0
BcaC05g28068 Brassica carinata HOM05D000439 ORTHO05D006172 5.0e-24 115.2 126 52.4
C05p40900 Brassica napus HOM05D000439 ORTHO05D006172 5.0e-24 115.2 126 52.4
BolC5t32832H Brassica oleracea HOM05D000439 ORTHO05D006172 5.0e-24 115.2 126 52.4
Rhsim04G0202100 Rhododendron simsii HOM05D000439 ORTHO05D006172 8.6e-24 114.4 146 47.3
Nn4g26325 Nelumbo nucifera HOM05D000439 ORTHO05D006172 1.1e-23 114.0 109 55.0
SGA_v2.0_scaffold550G52866 Striga asiatica HOM05D000439 ORTHO05D006172 1.1e-23 114.0 119 52.1
Thecc.04G232100 Theobroma cacao HOM05D000439 ORTHO05D006172 1.5e-23 113.6 126 50.0
Sc19g0004140 Simmondsia chinensis HOM05D000439 ORTHO05D006172 1.9e-23 113.2 103 59.2
MSTRG.24741 Avicennia marina HOM05D000439 ORTHO05D006172 2.5e-23 112.8 119 52.9
FAN16G2443 Fragaria x ananassa HOM05D000439 ORTHO05D006172 3.3e-23 112.5 58 96.6
MBI11_g31279_MAGBIO Magnolia biondii HOM05D000439 ORTHO05D006172 3.3e-23 112.5 142 46.5
Gohir.D02G038900 Gossypium hirsutum HOM05D000439 ORTHO05D006172 5.6e-23 111.7 103 56.3
Oeu050279.2 Olea europaea HOM05D000439 ORTHO05D006172 9.5e-23 110.9 132 46.2
Oeu031230.1 Olea europaea HOM05D000439 ORTHO05D006172 2.1e-22 109.8 132 45.5
Migut.N00184 Erythranthe guttata HOM05D000439 ORTHO05D006172 4.7e-22 108.6 133 47.4
SGA_v2.0_scaffold166G38355 Striga asiatica HOM05D000439 ORTHO05D006172 1.4e-21 107.1 117 50.4
Actinidia23511 Actinidia chinensis HOM05D000439 ORTHO05D006172 1.8e-21 106.7 72 69.4
Lj3C734T11 Lonicera japonica HOM05D000439 ORTHO05D006172 8.9e-21 104.4 131 52.7
Manes.02G074901 Manihot esculenta HOM05D000439 ORTHO05D006172 8.9e-21 104.4 124 52.4
VMungo0720G0964 Vigna mungo HOM05D000439 ORTHO05D006172 1.5e-20 103.6 125 44.0
Glyma.10G248000 Glycine max HOM05D000439 ORTHO05D006172 3.4e-20 102.4 73 64.4
unitig_26.g10518 Utricularia gibba HOM05D000439 ORTHO05D006172 1.3e-19 100.5 119 44.5
ECA240G1500 Erigeron canadensis HOM05D000439 ORTHO05D006172 1.1e-18 97.4 122 45.1
ECA240G1807 Erigeron canadensis HOM05D000439 ORTHO05D006172 1.1e-18 97.4 122 45.1
Lalb_Chr21g0304711 Lupinus albus HOM05D000439 ORTHO05D006172 6.6e-16 88.2 105 44.8
Os03g0794900 Oryza sativa ssp. japonica HOM05D000439 ORTHO05D006172 2.5e-15 86.3 145 37.2
ATR0697G242 Amborella trichopoda HOM05D000439 ORTHO05D006172 7.3e-15 84.7 123 37.4
HPP92_012138 Vanilla planifolia HOM05D000439 ORTHO05D006172 1.5e-12 77.0 147 34.7
Os07g0173200 Oryza sativa ssp. japonica HOM05D000439 ORTHO05D006172 4.4e-12 75.5 68 47.1
TAR636G1267 Trochodendron aralioides HOM05D000439 ORTHO05D009874 4.4e-12 75.5 115 40.9
TAR624G0363 Trochodendron aralioides HOM05D000439 ORTHO05D009874 7.5e-12 74.7 115 40.0
Zm00001eb301060 Zea mays HOM05D000439 ORTHO05D006172 7.5e-12 74.7 64 51.6
BraA05t21505Z Brassica rapa HOM05D000439 ORTHO05D006172 2.9e-11 72.8 91 46.2
Zm00001eb117030 Zea mays HOM05D000439 ORTHO05D006172 1.4e-10 70.5 61 49.2
Aqoxy7G03789 Aquilegia oxysepala HOM05D000439 ORTHO05D009874 1.9e-10 70.1 109 39.4
Nn2g11770 Nelumbo nucifera HOM05D000439 ORTHO05D009874 3.2e-10 69.3 137 35.0
Glyma.05G231700 Glycine max HOM05D000439 ORTHO05D009874 1.6e-09 67.0 109 37.6
PSO063G1966 Papaver somniferum HOM05D000439 ORTHO05D009874 4.6e-09 65.5 110 34.5
Glyma.08G039100 Glycine max HOM05D000439 ORTHO05D009874 1.0e-08 64.3 109 36.7
CDE07G0898 Ceratophyllum demersum HOM05D000439 ORTHO05D006172 1.3e-08 63.9 65 47.7
Potri.018G078701 Populus trichocarpa HOM05D000439 ORTHO05D009874 1.3e-08 63.9 107 36.4
CDE04G3570 Ceratophyllum demersum HOM05D000439 ORTHO05D006172 3.0e-08 62.8 65 46.2
Haze_25703 Corylus avellana HOM05D000439 ORTHO05D009874 3.9e-08 62.4 109 34.9
Actinidia40144 Actinidia chinensis HOM05D000439 ORTHO05D006172 5.1e-08 62.0 85 44.7
EL10Ac8g18511 Beta vulgaris HOM05D000439 ORTHO05D009874 5.1e-08 62.0 139 30.2
AUR62011007 Chenopodium quinoa HOM05D000439 ORTHO05D009874 5.1e-08 62.0 85 41.2
CiPaw.03G233300 Carya illinoinensis HOM05D000439 ORTHO05D009874 8.6e-08 61.2 109 38.5
MD15G1187200 Malus domestica HOM05D000439 ORTHO05D009874 8.6e-08 61.2 118 35.6
Sabra18G0066700 Salix brachista HOM05D000439 ORTHO05D009874 8.6e-08 61.2 107 36.4
FAN23G0749 Fragaria x ananassa HOM05D000439 ORTHO05D009874 1.1e-07 60.8 118 36.4
COL.COLO4_34901 Corchorus olitorius HOM05D000439 ORTHO05D009874 1.5e-07 60.5 109 33.9
Phvul.002G313900 Phaseolus vulgaris HOM05D000439 ORTHO05D009874 1.5e-07 60.5 115 33.9
SEGI_28702 Sequoiadendron giganteum HOM05D000439 ORTHO05D006172 1.5e-07 60.5 102 33.3
Sc14g0006950 Simmondsia chinensis HOM05D000439 ORTHO05D009874 1.5e-07 60.5 122 34.4
VMungo0251G2870 Vigna mungo HOM05D000439 ORTHO05D009874 1.5e-07 60.5 115 34.8
Ah.10g028890 Amaranthus hybridus HOM05D000439 ORTHO05D009874 1.9e-07 60.1 117 32.5
ECA238G1805 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.9e-07 60.1 46 60.9
CDE07G1583 Ceratophyllum demersum HOM05D000439 ORTHO05D009874 3.3e-07 59.3 122 35.2
AUR62021518 Chenopodium quinoa HOM05D000439 ORTHO05D009874 3.3e-07 59.3 99 37.4
Hund26144 Selenicereus undatus HOM05D000439 ORTHO05D009874 3.3e-07 59.3 105 32.4
TWI34G1498 Tripterygium wilfordii HOM05D000439 ORTHO05D009874 4.3e-07 58.9 130 30.8
TWI63G1161 Tripterygium wilfordii HOM05D000439 ORTHO05D009874 4.3e-07 58.9 117 34.2
ATR1120G089 Amborella trichopoda HOM05D000439 ORTHO05D009874 5.6e-07 58.5 110 33.6
FAN28G0603 Fragaria x ananassa HOM05D000439 ORTHO05D009874 5.6e-07 58.5 112 36.6
CSS0019665 Camellia sinensis var. sinensis HOM05D000439 ORTHO05D009874 7.3e-07 58.2 115 33.0
CDE06G2587 Ceratophyllum demersum HOM05D000439 ORTHO05D009874 9.5e-07 57.8 138 31.9
Psat7g013680 Pisum sativum HOM05D000439 ORTHO05D009874 9.5e-07 57.8 115 33.0
Manes.03G019300 Manihot esculenta HOM05D000439 ORTHO05D009874 1.6e-06 57.0 88 38.6
RcHm_v2.0_Chr2g0090711 Rosa chinensis HOM05D000439 ORTHO05D009874 1.6e-06 57.0 113 35.4
Prupe.7G229200 Prunus persica HOM05D000439 ORTHO05D009874 2.1e-06 56.6 107 34.6
vmacro05352 Vaccinium macrocarpon HOM05D000439 ORTHO05D009874 2.8e-06 56.2 128 29.7
FvH4_1g05070 Fragaria vesca HOM05D000439 ORTHO05D009874 3.6e-06 55.8 112 34.8
FAN26G1741 Fragaria x ananassa HOM05D000439 ORTHO05D009874 4.7e-06 55.5 112 35.7
CANSAT56G0657 Cannabis sativa HOM05D000439 ORTHO05D009874 6.2e-06 55.1 109 29.4
Lj4g0010983 Lotus japonicus HOM05D000439 ORTHO05D009874 6.2e-06 55.1 107 31.8
Lalb_Chr05g0222771 Lupinus albus HOM05D000439 ORTHO05D009874 8.1e-06 54.7 126 31.7


User provided reference genes

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