Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G1414 Fragaria x ananassa HOM05D003379 ORTHO05D003862 6.5e-202 707.2 367 100.0
FvH4_4g22730 Fragaria vesca HOM05D003379 ORTHO05D003862 4.0e-199 698.0 367 98.9
FAN07G0868 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.2e-187 659.8 374 93.3
FAN17G1075 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.7e-186 656.0 374 93.3
RcHm_v2.0_Chr4g0428951 Rosa chinensis HOM05D003379 ORTHO05D003862 3.3e-161 572.0 382 82.2
Prupe.1G216200 Prunus persica HOM05D003379 ORTHO05D003862 3.2e-92 342.8 396 56.8
MD13G1129900 Malus domestica HOM05D003379 ORTHO05D003862 1.5e-73 280.8 384 50.3
Haze_12496 Corylus avellana HOM05D003379 ORTHO05D003862 4.1e-71 272.7 426 44.1
CiPaw.06G109000 Carya illinoinensis HOM05D003379 ORTHO05D003862 7.2e-68 261.9 432 42.6
QL03p049546 Quercus lobata HOM05D003379 ORTHO05D003862 7.5e-65 251.9 428 42.1
Dinv19304 Davidia involucrata HOM05D003379 ORTHO05D003862 1.7e-61 240.7 449 40.3
Cfa009444 Carpinus fangiana HOM05D003379 ORTHO05D003862 3.8e-61 239.6 543 36.5
TAR475G0001 Trochodendron aralioides HOM05D003379 ORTHO05D003862 5.0e-61 239.2 442 39.6
Atru.chr12.1405 Acer truncatum HOM05D003379 ORTHO05D003862 1.1e-60 238.0 437 43.2
Ciclev10005064m.g Citrus clementina HOM05D003379 ORTHO05D003862 1.2e-59 234.6 428 43.0
TAR374G0325 Trochodendron aralioides HOM05D003379 ORTHO05D003862 2.1e-59 233.8 448 40.4
TWI75G1860 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 5.2e-58 229.2 429 41.3
Dinv01473 Davidia involucrata HOM05D003379 ORTHO05D003862 6.8e-58 228.8 433 41.6
Actinidia30590 Actinidia chinensis HOM05D003379 ORTHO05D003862 3.4e-57 226.5 425 39.3
Potri.003G163100 Populus trichocarpa HOM05D003379 ORTHO05D003862 2.2e-56 223.8 440 40.7
Sabra03G0118600 Salix brachista HOM05D003379 ORTHO05D003862 8.3e-56 221.9 440 40.2
Actinidia22119 Actinidia chinensis HOM05D003379 ORTHO05D003862 7.8e-54 215.3 432 40.7
COL.COLO4_21771 Corchorus olitorius HOM05D003379 ORTHO05D003862 7.8e-54 215.3 439 38.5
Rhsim12G0017700 Rhododendron simsii HOM05D003379 ORTHO05D003862 1.1e-52 211.5 437 37.8
Hma1.2p1_0787F.1_g217850 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 1.5e-52 211.1 454 37.7
Manes.08G101800 Manihot esculenta HOM05D003379 ORTHO05D003862 1.2e-51 208.0 437 41.0
Gorai.005G196800 Gossypium raimondii HOM05D003379 ORTHO05D003862 1.8e-50 204.1 439 39.4
TWI36G1473 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 6.8e-50 202.2 432 38.2
Gohir.D02G175200 Gossypium hirsutum HOM05D003379 ORTHO05D003862 1.5e-49 201.1 438 39.0
Duzib132G1102 Durio zibethinus HOM05D003379 ORTHO05D003862 2.6e-49 200.3 436 39.4
CSS0045312 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 8.3e-48 195.3 356 39.6
Thecc.02G193300 Theobroma cacao HOM05D003379 ORTHO05D003862 1.1e-47 194.9 438 39.3
Sc17g0006750 Simmondsia chinensis HOM05D003379 ORTHO05D003862 2.4e-47 193.7 432 36.8
THA.LOC104825464 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 2.7e-46 190.3 432 35.9
Dinv25618 Davidia involucrata HOM05D003379 ORTHO05D003862 3.5e-46 189.9 452 34.7
PGR142G1656 Punica granatum HOM05D003379 ORTHO05D003862 4.6e-46 189.5 437 35.2
MBI07_g41898_MAGBIO Magnolia biondii HOM05D003379 ORTHO05D003862 1.7e-45 187.6 448 33.7
CDE05G0540 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 2.5e-44 183.7 416 33.2
Manes.11G076800 Manihot esculenta HOM05D003379 ORTHO05D003862 9.5e-44 181.8 453 33.8
THA.LOC104825281 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 9.5e-44 181.8 433 36.0
Hund23589 Selenicereus undatus HOM05D003379 ORTHO05D003862 1.2e-43 181.4 444 34.2
Aqoxy6G00186 Aquilegia oxysepala HOM05D003379 ORTHO05D003862 2.8e-43 180.3 453 34.0
MELO3C014781.2 Cucumis melo HOM05D003379 ORTHO05D003862 2.8e-43 180.3 436 35.8
AUR62014693 Chenopodium quinoa HOM05D003379 ORTHO05D003862 3.6e-43 179.9 386 36.8
Cpa.g.sc70.68 Carica papaya HOM05D003379 ORTHO05D003862 6.2e-43 179.1 456 34.4
ClCG05G012630 Citrullus lanatus HOM05D003379 ORTHO05D003862 2.3e-42 177.2 447 34.9
QL02p069539 Quercus lobata HOM05D003379 ORTHO05D003862 3.1e-42 176.8 449 35.2
Ah.09g236390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 6.8e-42 175.6 439 35.8
CDE05G1535 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 6.8e-42 175.6 413 33.7
MSTRG.2062 Avicennia marina HOM05D003379 ORTHO05D003862 8.9e-42 175.3 450 31.6
Lj7A617T72 Lonicera japonica HOM05D003379 ORTHO05D003862 2.0e-41 174.1 445 35.3
Manes.09G187602 Manihot esculenta HOM05D003379 ORTHO05D003862 9.9e-41 171.8 429 36.1
Nn4g22138 Nelumbo nucifera HOM05D003379 ORTHO05D003862 2.2e-40 170.6 424 35.8
Sed0002814 Sechium edule HOM05D003379 ORTHO05D003862 4.9e-40 169.5 441 33.8
Atru.chr6.2693 Acer truncatum HOM05D003379 ORTHO05D003862 6.4e-40 169.1 434 33.6
Migut.E00693 Erythranthe guttata HOM05D003379 ORTHO05D003862 1.9e-39 167.5 443 33.4
Rhsim08G0039200 Rhododendron simsii HOM05D003379 ORTHO05D003862 2.4e-39 167.2 455 32.1
EL10Ac8g20553 Beta vulgaris HOM05D003379 ORTHO05D003862 3.2e-39 166.8 429 33.1
Sed0021165 Sechium edule HOM05D003379 ORTHO05D003862 3.2e-39 166.8 441 33.3
Gohir.A03G152100 Gossypium hirsutum HOM05D003379 ORTHO05D003862 4.1e-39 166.4 425 35.3
Duzib187G1855 Durio zibethinus HOM05D003379 ORTHO05D003862 7.1e-39 165.6 443 33.0
Aa31LG3G14350 Aethionema arabicum HOM05D003379 ORTHO05D003862 2.1e-38 164.1 424 34.9
C09p63750 Brassica napus HOM05D003379 ORTHO05D003862 2.7e-38 163.7 341 40.2
Actinidia36245 Actinidia chinensis HOM05D003379 ORTHO05D003862 3.5e-38 163.3 439 34.2
CsaV3_3G027780 Cucumis sativus L. HOM05D003379 ORTHO05D003862 3.5e-38 163.3 441 34.7
vmacro18379 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 3.5e-38 163.3 457 33.5
BraA10t44552Z Brassica rapa HOM05D003379 ORTHO05D003862 6.0e-38 162.5 361 36.6
PSO017G0829 Papaver somniferum HOM05D003379 ORTHO05D003862 1.0e-37 161.8 447 33.1
VMungo1383G3656 Vigna mungo HOM05D003379 ORTHO05D003862 1.0e-37 161.8 424 35.4
Cfa007165 Carpinus fangiana HOM05D003379 ORTHO05D003862 1.3e-37 161.4 449 33.4
Potri.014G143800 Populus trichocarpa HOM05D003379 ORTHO05D003862 1.3e-37 161.4 445 33.3
Ciclev10015333m.g Citrus clementina HOM05D003379 ORTHO05D003862 1.7e-37 161.0 443 33.6
PSO478G4908 Papaver somniferum HOM05D003379 ORTHO05D003862 2.3e-37 160.6 447 34.0
Sopen04g017060 Solanum pennellii HOM05D003379 ORTHO05D003862 3.0e-37 160.2 406 34.7
TWI32G0366 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 3.9e-37 159.8 436 34.9
COL.COLO4_13374 Corchorus olitorius HOM05D003379 ORTHO05D003862 5.1e-37 159.5 447 32.7
BcaC04g19123 Brassica carinata HOM05D003379 ORTHO05D003862 6.6e-37 159.1 415 36.9
MD09G1002700 Malus domestica HOM05D003379 ORTHO05D003862 6.6e-37 159.1 438 33.1
Peaxi162Scf00171g00621 Petunia axillaris HOM05D003379 ORTHO05D003862 6.6e-37 159.1 419 34.6
vmacro01023 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 6.6e-37 159.1 429 34.3
A10p24890 Brassica napus HOM05D003379 ORTHO05D003862 1.5e-36 157.9 341 37.0
HanXRQChr12g0384731 Helianthus annuus HOM05D003379 ORTHO05D003862 3.3e-36 156.8 374 37.2
Nitab4.5_0002116g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 5.6e-36 156.0 416 34.1
Nitab4.5_0005424g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 5.6e-36 156.0 402 33.8
Haze_14949 Corylus avellana HOM05D003379 ORTHO05D003862 7.3e-36 155.6 452 32.5
Thecc.04G047800 Theobroma cacao HOM05D003379 ORTHO05D003862 9.5e-36 155.2 454 33.9
Ca_08145_v3 Cicer arietinum L. HOM05D003379 ORTHO05D003862 1.6e-35 154.5 420 33.3
Thhalv10013755m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 1.6e-35 154.5 415 35.2
PGSC0003DMG400004243 Solanum tuberosum HOM05D003379 ORTHO05D003862 1.6e-35 154.5 408 34.6
CAN.G7.8 Capsicum annuum HOM05D003379 ORTHO05D003862 2.8e-35 153.7 413 34.1
EL10Ac6g13403 Beta vulgaris HOM05D003379 ORTHO05D003862 3.6e-35 153.3 492 32.5
ECA234G2936 Erigeron canadensis HOM05D003379 ORTHO05D003862 4.7e-35 152.9 385 34.5
Sc03g0005220 Simmondsia chinensis HOM05D003379 ORTHO05D003862 4.7e-35 152.9 429 33.8
Solyc04g024520.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 1.1e-34 151.8 406 34.2
Phvul.001G084300 Phaseolus vulgaris HOM05D003379 ORTHO05D003862 1.8e-34 151.0 428 33.6
Gohir.A07G232700 Gossypium hirsutum HOM05D003379 ORTHO05D003862 3.1e-34 150.2 452 31.4
Gorai.001G276100 Gossypium raimondii HOM05D003379 ORTHO05D003862 3.1e-34 150.2 452 31.4
Lalb_Chr14g0364121 Lupinus albus HOM05D003379 ORTHO05D003862 5.2e-34 149.4 427 34.4
Gohir.D07G239900 Gossypium hirsutum HOM05D003379 ORTHO05D003862 6.8e-34 149.1 454 30.8
AUR62017428 Chenopodium quinoa HOM05D003379 ORTHO05D003862 1.2e-33 148.3 328 37.5
Medtr7g084070 Medicago truncatula HOM05D003379 ORTHO05D003862 1.2e-33 148.3 391 33.5
Sabra02G0181500 Salix brachista HOM05D003379 ORTHO05D003862 1.5e-33 147.9 437 32.0
Sp6g30680 Schrenkiella parvula HOM05D003379 ORTHO05D003862 1.5e-33 147.9 409 34.0
MD17G1006900 Malus domestica HOM05D003379 ORTHO05D003862 2.0e-33 147.5 433 31.9
HPP92_027984 Vanilla planifolia HOM05D003379 ORTHO05D003862 2.0e-33 147.5 358 34.4
CiPaw.04G001500 Carya illinoinensis HOM05D003379 ORTHO05D003862 2.6e-33 147.1 334 37.7
GSVIVG01001080001 Vitis vinifera HOM05D003379 ORTHO05D003862 2.6e-33 147.1 409 33.7
Lj1g0011786 Lotus japonicus HOM05D003379 ORTHO05D003862 3.4e-33 146.7 457 32.2
Potri.002G238100 Populus trichocarpa HOM05D003379 ORTHO05D003862 4.4e-33 146.4 438 32.4
C09p63160 Brassica napus HOM05D003379 ORTHO05D003862 9.9e-33 145.2 411 32.8
SGA_v2.0_scaffold306G48013 Striga asiatica HOM05D003379 ORTHO05D003862 1.3e-32 144.8 451 30.4
AL6G23930 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 2.2e-32 144.1 409 33.3
A10p24430 Brassica napus HOM05D003379 ORTHO05D003862 2.9e-32 143.7 411 32.8
SalBow6G5409 Salvia bowleyana HOM05D003379 ORTHO05D003862 2.9e-32 143.7 325 36.9
AUR62037825 Chenopodium quinoa HOM05D003379 ORTHO05D003862 3.8e-32 143.3 328 36.6
FvH4_6g54290 Fragaria vesca HOM05D003379 ORTHO05D003862 3.8e-32 143.3 428 32.5
FAN09G0861 Fragaria x ananassa HOM05D003379 ORTHO05D003862 3.8e-32 143.3 426 32.6
Eucgr.I02446 Eucalyptus grandis HOM05D003379 ORTHO05D003862 4.9e-32 142.9 463 30.0
BolC9t59151H Brassica oleracea HOM05D003379 ORTHO05D003862 6.4e-32 142.5 412 32.3
Glyma.19G103400 Glycine max HOM05D003379 ORTHO05D003862 1.9e-31 141.0 433 31.9
BraA10t44509Z Brassica rapa HOM05D003379 ORTHO05D003862 2.4e-31 140.6 410 32.4
Psat3g093320 Pisum sativum HOM05D003379 ORTHO05D003862 2.4e-31 140.6 429 31.9
FAN14G1380 Fragaria x ananassa HOM05D003379 ORTHO05D003862 3.2e-31 140.2 428 32.2
AT5G13310 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 4.1e-31 139.8 406 33.7
Cc07_g01280 Coffea canephora HOM05D003379 ORTHO05D003862 4.1e-31 139.8 499 28.9
CARHR200130 Cardamine hirsuta HOM05D003379 ORTHO05D003862 7.1e-31 139.0 415 33.5
ATR0582G197 Amborella trichopoda HOM05D003379 ORTHO05D003862 2.7e-30 137.1 443 30.7
Ah.03g136390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 3.5e-30 136.7 476 31.1
Zm00001eb084870 Zea mays HOM05D003379 ORTHO05D003862 4.6e-30 136.3 447 29.8
Carub.0006s1148 Capsella rubella HOM05D003379 ORTHO05D003862 6.0e-30 136.0 419 32.7
Thhalv10013725m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 7.8e-30 135.6 425 32.0
Lsat_1_v5_gn_4_1521 Lactuca sativa HOM05D003379 ORTHO05D003862 7.8e-30 135.6 295 38.0
DCAR_002970 Daucus carota HOM05D003379 ORTHO05D003862 1.3e-29 134.8 435 31.5
Prupe.3G313500 Prunus persica HOM05D003379 ORTHO05D003862 3.9e-29 133.3 445 30.3
Sp6g30030 Schrenkiella parvula HOM05D003379 ORTHO05D003862 1.5e-28 131.3 422 31.8
FAN05G5138 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.9e-28 131.0 424 30.9
Hund04187 Selenicereus undatus HOM05D003379 ORTHO05D003862 4.3e-28 129.8 472 30.9
Zm00001eb421370 Zea mays HOM05D003379 ORTHO05D003862 4.3e-28 129.8 448 29.0
Glyma.16G047900 Glycine max HOM05D003379 ORTHO05D003862 8.1e-27 125.6 440 32.0
Carub.0006s1216 Capsella rubella HOM05D003379 ORTHO05D003862 1.4e-26 124.8 429 31.2
Nitab4.5_0001409g0240 Nicotiana tabacum HOM05D000225 ORTHO05D001595 1.4e-26 124.8 405 28.4
Duzib147G0361 Durio zibethinus HOM05D003379 ORTHO05D003862 3.1e-26 123.6 375 30.9
AUR62012502 Chenopodium quinoa HOM05D003379 ORTHO05D003862 1.2e-25 121.7 388 31.7
CSS0041611 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 1.5e-25 121.3 460 29.3
Aa31LG11G15410 Aethionema arabicum HOM05D003379 ORTHO05D003862 5.8e-25 119.4 431 29.2
AL6G24630 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 5.8e-25 119.4 420 31.9
AT5G13970 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 7.6e-25 119.0 430 30.2
CANSAT64G2275 Cannabis sativa HOM05D003379 ORTHO05D003862 1.3e-24 118.2 426 29.1
Lalb_Chr22g0359971 Lupinus albus HOM05D003379 ORTHO05D003862 1.3e-24 118.2 440 32.3
Oeu027918.1 Olea europaea HOM05D003379 ORTHO05D003862 3.8e-24 116.7 420 27.9
Nitab4.5_0007209g0030 Nicotiana tabacum HOM05D000225 ORTHO05D001595 6.4e-24 115.9 381 28.3
Sopen02g036510 Solanum pennellii HOM05D003379 ORTHO05D003862 1.9e-23 114.4 412 28.6
arahy.Tifrunner.gnm1.ann1.JRYW6U Arachis hypogaea HOM05D003379 ORTHO05D003862 5.4e-23 112.8 444 31.3
CSS0018885 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 9.3e-23 112.1 282 34.4
Solyc02g091940.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 3.5e-22 110.2 412 28.4
CARHR199420 Cardamine hirsuta HOM05D003379 ORTHO05D003862 1.7e-21 107.8 249 36.1
unitig_22.g5626 Utricularia gibba HOM05D003379 ORTHO05D003862 2.3e-21 107.5 385 29.9
Lsat_1_v5_gn_0_41321 Lactuca sativa HOM05D003379 ORTHO05D003862 2.5e-20 104.0 434 26.5
Lj6P837T11 Lonicera japonica HOM05D003379 ORTHO05D003862 2.1e-19 100.9 161 42.9
HPP92_006450 Vanilla planifolia HOM05D003379 ORTHO05D003862 8.1e-19 99.0 285 32.3
arahy.Tifrunner.gnm1.ann1.M1DIX9 Arachis hypogaea HOM05D003379 ORTHO05D003862 1.4e-18 98.2 442 29.6
SMO117G0242 Selaginella moellendorffii HOM05D002493 ORTHO05D003175 1.4e-18 98.2 395 28.9
ECA246G3772 Erigeron canadensis HOM05D003379 ORTHO05D003862 4.0e-18 96.7 442 27.1
CAN.G1061.1 Capsicum annuum HOM05D003379 ORTHO05D003862 4.5e-17 93.2 413 27.6
PGSC0003DMG400021424 Solanum tuberosum HOM05D003379 ORTHO05D003862 9.9e-17 92.0 416 26.9
Cpa.g.sc38.89 Carica papaya HOM05D003379 ORTHO05D003862 2.2e-16 90.9 171 40.9
BcaNung03374 Brassica carinata HOM05D003379 ORTHO05D003862 1.4e-15 88.2 174 38.5
HanXRQChr17g0550921 Helianthus annuus HOM05D003379 ORTHO05D003862 1.2e-14 85.1 202 34.7
Pp3c5_23700 Physcomitrium patens HOM05D003379 ORTHO05D003862 1.1e-12 78.6 372 27.4
Ah.14g088790 Amaranthus hybridus HOM05D003379 ORTHO05D003862 4.0e-10 70.1 184 34.2
AagrBONN_evm.TU.Sc2ySwM_369.605 Anthoceros agrestis HOM05D003379 ORTHO05D003862 5.3e-10 69.7 259 30.1
BcaC04g20129 Brassica carinata HOM05D003379 ORTHO05D003862 5.8e-09 66.2 172 34.9
BolC7t42848H Brassica oleracea HOM05D003379 ORTHO05D003862 1.3e-08 65.1 184 34.2
RcHm_v2.0_Chr3g0475791 Rosa chinensis HOM05D003379 ORTHO05D003862 1.4e-07 61.6 349 26.1
Mapoly0001s0546 Marchantia polymorpha HOM05D003379 ORTHO05D003862 7.1e-07 59.3 402 25.6
BcaC01g02664 Brassica carinata HOM05D003379 ORTHO05D003862 9.3e-07 58.9 71 45.1
BolC3t18480H Brassica oleracea HOM05D003379 ORTHO05D003862 1.6e-06 58.2 71 45.1


User provided reference genes

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