Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 6.5e-205 717.2 378 100.0
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 9.4e-204 713.4 378 99.5
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 8.2e-192 673.7 374 94.7
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 4.0e-186 654.8 419 86.2
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 2.7e-174 615.5 378 86.5
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 1.1e-156 557.0 378 78.0
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 3.7e-152 542.0 340 85.3
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 1.1e-148 530.4 378 74.6
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 1.1e-148 530.4 378 74.6
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 3.3e-148 528.9 378 73.5
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 1.8e-130 469.9 380 67.9
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 7.1e-127 458.0 374 66.8
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 4.8e-123 445.3 381 64.8
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 1.6e-115 420.2 384 58.9
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 1.6e-115 420.2 366 63.7
Sabra01G0034700 Salix brachista HOM05D002428 ORTHO05D005085 2.1e-115 419.9 367 63.2
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 6.2e-115 418.3 373 58.7
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 1.8e-114 416.8 369 60.4
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.4e-114 416.4 373 58.7
Ciclev10005183m.g Citrus clementina HOM05D002428 ORTHO05D005085 5.3e-114 415.2 373 61.4
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 3.4e-113 412.5 373 57.9
Potri.003G178400 Populus trichocarpa HOM05D002428 ORTHO05D005085 3.4e-113 412.5 366 62.3
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 2.4e-111 406.4 379 59.9
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 4.6e-110 402.1 379 59.9
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 6.0e-110 401.7 374 59.9
Gohir.D10G143200 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.3e-109 400.6 362 59.4
Gorai.011G160000 Gossypium raimondii HOM05D002428 ORTHO05D005085 8.7e-109 397.9 362 58.8
TAR362G0527 Trochodendron aralioides HOM05D002428 ORTHO05D005085 3.3e-108 396.0 375 58.1
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 3.3e-108 396.0 375 59.7
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 9.6e-108 394.4 381 59.6
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.6e-107 393.7 369 56.6
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 2.1e-107 393.3 367 59.7
Gohir.A10G122900 Gossypium hirsutum HOM05D002428 ORTHO05D005085 8.1e-107 391.3 362 58.3
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 1.8e-106 390.2 369 59.9
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 2.0e-105 386.7 366 60.4
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 4.5e-105 385.6 374 56.7
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 4.5e-105 385.6 369 55.8
Gorai.005G034400 Gossypium raimondii HOM05D002428 ORTHO05D005085 4.5e-105 385.6 369 56.1
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 5.8e-105 385.2 353 58.9
Manes.03G149000 Manihot esculenta HOM05D002428 ORTHO05D005085 2.2e-104 383.3 369 57.2
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 2.9e-104 382.9 374 55.9
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 4.2e-103 379.0 374 58.6
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 5.5e-103 378.6 358 58.9
COL.COLO4_20262 Corchorus olitorius HOM05D002428 ORTHO05D005085 6.0e-102 375.2 321 61.7
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 1.0e-101 374.4 370 56.8
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 1.3e-101 374.0 372 55.4
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 1.5e-100 370.5 329 60.8
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 1.3e-99 367.5 372 55.9
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 6.3e-99 365.2 373 55.8
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 6.3e-99 365.2 361 55.4
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 8.2e-99 364.8 351 59.0
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 1.1e-98 364.4 373 55.5
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 6.9e-98 361.7 370 55.7
Duzib212G0991 Durio zibethinus HOM05D002428 ORTHO05D005085 4.5e-97 359.0 368 56.0
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 1.0e-96 357.8 373 54.4
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 1.0e-96 357.8 365 55.6
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 2.9e-96 356.3 358 54.2
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 1.4e-95 354.0 324 60.5
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 1.4e-95 354.0 341 58.4
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 3.2e-95 352.8 357 55.7
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 7.2e-95 351.7 381 53.0
VMungo0540G1973 Vigna mungo HOM05D002428 ORTHO05D005085 1.2e-94 350.9 361 52.6
CAN.G500.14 Capsicum annuum HOM05D002428 ORTHO05D005085 2.7e-94 349.7 381 53.0
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 2.3e-93 346.7 378 50.0
PGSC0003DMG400029636 Solanum tuberosum HOM05D002428 ORTHO05D005085 2.5e-92 343.2 381 52.5
THA.LOC104808717 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 4.3e-92 342.4 371 53.1
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 7.4e-92 341.7 376 51.9
Sc13g0000100 Simmondsia chinensis HOM05D002428 ORTHO05D005085 6.3e-91 338.6 371 51.8
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 8.2e-91 338.2 373 52.3
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 1.4e-90 337.4 385 51.4
Nitab4.5_0003750g0010 Nicotiana tabacum HOM05D002428 ORTHO05D005085 1.8e-90 337.0 366 52.7
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 6.9e-90 335.1 360 53.9
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 2.6e-89 333.2 373 50.7
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 3.4e-89 332.8 382 51.3
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 2.2e-88 330.1 355 50.4
Peaxi162Scf00047g00728 Petunia axillaris HOM05D002428 ORTHO05D005085 2.9e-88 329.7 372 52.7
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 3.8e-88 329.3 350 53.4
BcaB03g14602 Brassica carinata HOM05D002428 ORTHO05D005085 1.1e-87 327.8 371 50.7
THA.LOC104804814 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 1.4e-87 327.4 373 49.6
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 1.9e-87 327.0 369 49.9
MBI10_g05704_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D005085 3.2e-87 326.2 363 52.3
Sp3g21770 Schrenkiella parvula HOM05D002428 ORTHO05D005085 5.5e-87 325.5 373 51.5
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 5.5e-87 325.5 312 59.3
Thhalv10002585m.g Eutrema salsugineum HOM05D002428 ORTHO05D005085 7.9e-86 321.6 370 51.1
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 1.8e-85 320.5 331 54.7
BolC1t03917H Brassica oleracea HOM05D002428 ORTHO05D005085 2.3e-85 320.1 371 50.7
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 2.3e-85 320.1 319 55.8
C01p39650 Brassica napus HOM05D002428 ORTHO05D005085 5.1e-85 318.9 371 50.7
Nitab4.5_0004974g0030 Nicotiana tabacum HOM05D002428 ORTHO05D005085 5.1e-85 318.9 362 51.9
TAR633G2286 Trochodendron aralioides HOM05D002428 ORTHO05D005085 7.4e-84 315.1 364 51.4
A01p31110 Brassica napus HOM05D002428 ORTHO05D005085 9.7e-84 314.7 371 50.1
BraA01t03235Z Brassica rapa HOM05D002428 ORTHO05D005085 9.7e-84 314.7 371 50.1
PSO170G6100 Papaver somniferum HOM05D002428 ORTHO05D005085 1.7e-83 313.9 361 53.2
AL3G39100 Arabidopsis lyrata HOM05D002428 ORTHO05D005085 2.8e-83 313.2 371 50.1
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 2.4e-82 310.1 306 54.9
BcaC01g03347 Brassica carinata HOM05D002428 ORTHO05D005085 5.3e-82 308.9 370 49.5
BcaB06g26571 Brassica carinata HOM05D002428 ORTHO05D005085 1.5e-81 307.4 356 50.6
EL10Ac3g07490 Beta vulgaris HOM05D002428 ORTHO05D005085 2.6e-81 306.6 383 49.6
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 3.4e-81 306.2 370 50.0
A03p43460 Brassica napus HOM05D002428 ORTHO05D005085 2.9e-80 303.1 370 49.2
A07p08320 Brassica napus HOM05D002428 ORTHO05D005085 3.8e-80 302.8 381 48.0
BolC3t17603H Brassica oleracea HOM05D002428 ORTHO05D005085 3.8e-80 302.8 370 49.2
BraA07t28615Z Brassica rapa HOM05D002428 ORTHO05D005085 3.8e-80 302.8 381 48.0
BraA03t13484Z Brassica rapa HOM05D002428 ORTHO05D005085 1.1e-79 301.2 370 49.2
AT3G24160 Arabidopsis thaliana HOM05D002428 ORTHO05D005085 1.9e-79 300.4 374 48.9
C03p53420 Brassica napus HOM05D002428 ORTHO05D005085 2.5e-79 300.1 370 49.2
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 7.2e-79 298.5 356 49.7
SGA_v2.0_scaffold72G24051 Striga asiatica HOM05D002428 ORTHO05D005085 1.2e-78 297.7 379 47.5
BolC7t41792H Brassica oleracea HOM05D002428 ORTHO05D005085 1.6e-78 297.4 380 47.9
BcaC06g35609 Brassica carinata HOM05D002428 ORTHO05D005085 3.6e-78 296.2 380 47.9
C07p12990 Brassica napus HOM05D002428 ORTHO05D005085 3.6e-78 296.2 380 47.9
PSO674G0088 Papaver somniferum HOM05D002428 ORTHO05D005085 1.4e-77 294.3 382 49.0
BcaB04g20405 Brassica carinata HOM05D002428 ORTHO05D005085 2.6e-76 290.0 371 47.7
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 1.3e-75 287.7 375 44.5
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 7.0e-74 282.0 333 50.5
Carub.0003s2434 Capsella rubella HOM05D002428 ORTHO05D005085 7.0e-74 282.0 374 47.3
unitig_26.g9776 Utricularia gibba HOM05D002428 ORTHO05D005085 1.6e-73 280.8 377 45.1
Zm00001eb038510 Zea mays HOM05D002428 ORTHO05D005085 2.9e-72 276.6 359 46.0
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 7.2e-71 271.9 290 51.7
AUR62020812 Chenopodium quinoa HOM05D002428 ORTHO05D005085 1.4e-69 267.7 353 47.0
Actinidia25627 Actinidia chinensis HOM05D002428 ORTHO05D005085 1.2e-68 264.6 331 48.9
Os08g0567000 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D005085 1.2e-68 264.6 350 44.3
CDE09G0695 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 1.5e-68 264.2 359 43.5
CDE11G0336 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 3.3e-68 263.1 373 42.4
ATR0736G031 Amborella trichopoda HOM05D002428 ORTHO05D005085 1.7e-64 250.8 336 44.0
MELO3C006320.2 Cucumis melo HOM05D002428 ORTHO05D005085 7.2e-63 245.4 267 47.9
SEGI_17850 Sequoiadendron giganteum HOM05D002428 ORTHO05D005085 2.0e-52 210.7 332 42.5
HPP92_020844 Vanilla planifolia HOM05D002428 ORTHO05D005085 4.4e-52 209.5 375 38.4
AUR62032922 Chenopodium quinoa HOM05D002428 ORTHO05D005085 9.8e-52 208.4 286 44.8
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 2.7e-49 200.3 199 54.8
Cpa.g.sc59.124 Carica papaya HOM05D002428 ORTHO05D005085 5.8e-36 156.0 130 65.4
Lj3A543T20 Lonicera japonica HOM05D002428 ORTHO05D005085 8.3e-35 152.1 131 65.6
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.3e-31 140.2 137 50.4
Gorai.011G166500 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.2e-30 138.3 139 48.2
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 4.0e-29 133.3 157 47.1
Gohir.D07G140050 Gossypium hirsutum HOM05D002428 ORTHO05D005085 4.4e-28 129.8 131 49.6
SMO367G0336 Selaginella moellendorffii HOM05D002428 ORTHO05D005085 6.4e-27 125.9 387 30.5
Ah.01g001410 Amaranthus hybridus HOM05D002428 ORTHO05D005085 8.3e-27 125.6 262 34.7
Gorai.007G194000 Gossypium raimondii HOM05D002428 ORTHO05D005085 8.3e-27 125.6 126 49.2
Ah.01g001400 Amaranthus hybridus HOM05D002428 ORTHO05D005085 5.4e-26 122.9 268 35.1
Mapoly0023s0054 Marchantia polymorpha HOM05D002428 ORTHO05D005085 1.2e-25 121.7 398 29.6
CBR_g18980 Chara braunii HOM05D002428 ORTHO05D005085 7.3e-23 112.5 379 29.3
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 3.6e-22 110.2 102 52.0
Pp3c14_7560 Physcomitrium patens HOM05D002428 ORTHO05D005085 1.2e-20 105.1 362 27.3
Nitab4.5_0001063g0080 Nicotiana tabacum HOM05D002389 ORTHO05D005085 7.6e-20 102.4 242 32.2
Pp3c10_8060 Physcomitrium patens HOM05D002428 ORTHO05D005085 5.4e-18 96.3 362 26.0
Nitab4.5_0000081g0050 Nicotiana tabacum HOM05D002428 ORTHO05D005085 2.5e-15 87.4 165 31.5
PSO017G6711 Papaver somniferum HOM05D002428 ORTHO05D005085 5.8e-12 76.3 98 46.9
Glyma.15G198202 Glycine max HOM05D002428 ORTHO05D005085 2.2e-11 74.3 64 57.8
Rhsim09G0053800 Rhododendron simsii HOM05D002428 ORTHO05D005085 2.4e-10 70.9 95 49.5
Rhsim09G0054400 Rhododendron simsii HOM05D002428 ORTHO05D005085 2.4e-10 70.9 95 49.5
Solyc05g044540.3 Solanum lycopersicum HOM05D008774 ORTHO05D010951 2.4e-10 70.9 71 46.5
Peaxi162Scf00598g00061 Petunia axillaris HOM05D002428 ORTHO05D005085 6.6e-08 62.8 79 45.6
Oeu003801.3 Olea europaea HOM05D000258 ORTHO05D000153 9.6e-07 58.9 72 45.8
Oeu041684.1 Olea europaea HOM05D002428 ORTHO05D005085 9.6e-07 58.9 67 47.8
Oeu020092.1 Olea europaea HOM05D002428 ORTHO05D005085 1.6e-06 58.2 72 43.1
Oeu061488.3 Olea europaea HOM05D001416 ORTHO05D002549 2.1e-06 57.8 54 51.9
Oeu044084.1 Olea europaea HOM05D002428 ORTHO05D005085 3.6e-06 57.0 52 53.8


User provided reference genes

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