Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G1276 Fragaria x ananassa HOM05D006500 ORTHO05D008028 4.7e-120 434.5 213 100.0
FAN22G1805 Fragaria x ananassa HOM05D006500 ORTHO05D008028 1.3e-98 363.2 215 86.0
FAN07G0402 Fragaria x ananassa HOM05D006500 ORTHO05D008028 3.0e-98 362.1 215 86.0
FAN12G2511 Fragaria x ananassa HOM05D006500 ORTHO05D008028 9.6e-81 303.9 213 74.6
FvH4_4g10450 Fragaria vesca HOM05D006500 ORTHO05D008028 2.1e-80 302.8 213 74.6
FAN17G0772 Fragaria x ananassa HOM05D006500 ORTHO05D008028 2.6e-78 295.8 213 72.8
RcHm_v2.0_Chr4g0405941 Rosa chinensis HOM05D006500 ORTHO05D008028 6.3e-72 274.6 213 69.0
MD17G1177800 Malus domestica HOM05D006500 ORTHO05D008028 6.9e-63 244.6 211 63.5
MD04G1049100 Malus domestica HOM05D006500 ORTHO05D008028 1.2e-62 243.8 212 63.2
Prupe.1G207200 Prunus persica HOM05D006500 ORTHO05D008028 1.3e-61 240.4 205 62.9
TWI38G1400 Tripterygium wilfordii HOM05D006500 ORTHO05D008028 4.7e-59 231.9 209 57.4
Medtr4g087310 Medicago truncatula HOM05D006500 ORTHO05D008028 1.0e-58 230.7 208 59.1
CANSAT56G1821 Cannabis sativa HOM05D006500 ORTHO05D008028 1.1e-57 227.3 210 58.6
Thhalv10008926m.g Eutrema salsugineum HOM05D006500 ORTHO05D008028 1.1e-57 227.3 216 55.6
GSVIVG01038143001 Vitis vinifera HOM05D006500 ORTHO05D008028 1.1e-57 227.3 195 60.0
Potri.019G112100 Populus trichocarpa HOM05D006500 ORTHO05D008028 1.5e-57 226.9 191 61.3
Psat7g120240 Pisum sativum HOM05D006500 ORTHO05D008028 2.6e-57 226.1 207 57.5
DCAR_023930 Daucus carota HOM05D006500 ORTHO05D008028 5.7e-57 224.9 198 57.1
Glyma.07G207800 Glycine max HOM05D006500 ORTHO05D008028 5.7e-57 224.9 203 57.6
BcaC07g42119 Brassica carinata HOM05D006500 ORTHO05D008028 7.4e-57 224.6 211 55.5
CiPaw.02G100400 Carya illinoinensis HOM05D006500 ORTHO05D008028 7.4e-57 224.6 187 61.0
Glyma.02G137600 Glycine max HOM05D006500 ORTHO05D008028 7.4e-57 224.6 203 57.6
Phvul.003G296700 Phaseolus vulgaris HOM05D006500 ORTHO05D008028 7.4e-57 224.6 208 58.7
Aa31LG1G8630 Aethionema arabicum HOM05D006500 ORTHO05D008028 9.7e-57 224.2 187 61.5
CAN.G136.13 Capsicum annuum HOM05D006500 ORTHO05D008028 9.7e-57 224.2 204 56.4
Sp1g04540 Schrenkiella parvula HOM05D006500 ORTHO05D008028 9.7e-57 224.2 205 56.1
Lalb_Chr09g0328101 Lupinus albus HOM05D006500 ORTHO05D008028 1.3e-56 223.8 211 55.5
Sabra19G0108100 Salix brachista HOM05D006500 ORTHO05D008028 1.3e-56 223.8 191 60.2
vmacro00698 Vaccinium macrocarpon HOM05D006500 ORTHO05D008028 2.2e-56 223.0 209 54.5
Carub.0001s0507 Capsella rubella HOM05D006500 ORTHO05D008028 2.8e-56 222.6 202 55.4
Ca_18638_v3 Cicer arietinum L. HOM05D006500 ORTHO05D008028 2.8e-56 222.6 188 60.1
HanXRQChr14g0433631 Helianthus annuus HOM05D003327 ORTHO05D004535 2.8e-56 222.6 191 57.6
Lj4g0023361 Lotus japonicus HOM05D006500 ORTHO05D008028 2.8e-56 222.6 211 55.9
Peaxi162Scf00180g00116 Petunia axillaris HOM05D006500 ORTHO05D008028 2.8e-56 222.6 208 55.3
AL1G15630 Arabidopsis lyrata HOM05D006500 ORTHO05D008028 3.7e-56 222.2 201 56.2
Duzib268G0518 Durio zibethinus HOM05D006500 ORTHO05D008028 3.7e-56 222.2 186 60.2
BcaC07g42115 Brassica carinata HOM05D006500 ORTHO05D008028 4.8e-56 221.9 211 55.0
BcaC07g42118 Brassica carinata HOM05D006500 ORTHO05D008028 4.8e-56 221.9 211 55.0
C08p51630 Brassica napus HOM05D006500 ORTHO05D008028 4.8e-56 221.9 211 55.0
BolC8t52691H Brassica oleracea HOM05D006500 ORTHO05D008028 4.8e-56 221.9 211 55.0
Solyc06g053430.4 Solanum lycopersicum HOM05D006500 ORTHO05D008028 4.8e-56 221.9 204 55.9
Sopen06g018490 Solanum pennellii HOM05D006500 ORTHO05D008028 4.8e-56 221.9 204 55.9
PGSC0003DMG400016334 Solanum tuberosum HOM05D006500 ORTHO05D008028 4.8e-56 221.9 204 55.9
ClCG06G001100 Citrullus lanatus HOM05D006500 ORTHO05D008028 6.3e-56 221.5 208 55.8
Gohir.A05G327700 Gossypium hirsutum HOM05D006500 ORTHO05D008028 6.3e-56 221.5 207 55.1
Sed0015541 Sechium edule HOM05D006500 ORTHO05D008028 6.3e-56 221.5 191 59.2
VMungo0251G2572 Vigna mungo HOM05D006500 ORTHO05D008028 6.3e-56 221.5 207 58.5
A09p67320 Brassica napus HOM05D006500 ORTHO05D008028 8.2e-56 221.1 205 55.1
CSS0014789 Camellia sinensis var. sinensis HOM05D006500 ORTHO05D008028 8.2e-56 221.1 199 57.3
QL10p055774 Quercus lobata HOM05D006500 ORTHO05D008028 8.2e-56 221.1 210 56.7
arahy.Tifrunner.gnm1.ann1.A3K5YX Arachis hypogaea HOM05D006500 ORTHO05D008028 1.1e-55 220.7 207 56.0
arahy.Tifrunner.gnm1.ann1.SHKR8E Arachis hypogaea HOM05D006500 ORTHO05D008028 1.1e-55 220.7 207 56.0
COL.COLO4_08138 Corchorus olitorius HOM05D006500 ORTHO05D008028 1.1e-55 220.7 191 58.6
Thecc.04G165600 Theobroma cacao HOM05D006500 ORTHO05D008028 1.1e-55 220.7 187 58.8
Atru.chr4.1419 Acer truncatum HOM05D006500 ORTHO05D008028 1.4e-55 220.3 206 56.8
CARHR005240 Cardamine hirsuta HOM05D006500 ORTHO05D008028 1.4e-55 220.3 206 54.9
Cpa.g.sc9.364 Carica papaya HOM05D006500 ORTHO05D008028 1.4e-55 220.3 187 59.4
CiPaw.01G170700 Carya illinoinensis HOM05D006500 ORTHO05D008028 1.4e-55 220.3 187 59.4
Sc25g0002800 Simmondsia chinensis HOM05D006500 ORTHO05D008028 1.8e-55 219.9 187 58.3
BraA09t42063Z Brassica rapa HOM05D006500 ORTHO05D008028 2.4e-55 219.5 205 54.6
Nitab4.5_0001586g0010 Nicotiana tabacum HOM05D006500 ORTHO05D008028 2.4e-55 219.5 199 56.3
Rhsim09G0010200 Rhododendron simsii HOM05D006500 ORTHO05D008028 2.4e-55 219.5 209 54.5
Actinidia27113 Actinidia chinensis HOM05D006500 ORTHO05D008028 3.1e-55 219.2 203 56.2
Dinv33205 Davidia involucrata HOM05D006500 ORTHO05D008028 3.1e-55 219.2 187 59.4
TAR365G1104 Trochodendron aralioides HOM05D006500 ORTHO05D008028 3.1e-55 219.2 187 57.8
AT1G05720 Arabidopsis thaliana HOM05D006500 ORTHO05D008028 5.3e-55 218.4 206 53.9
Gohir.D05G327900 Gossypium hirsutum HOM05D006500 ORTHO05D008028 5.3e-55 218.4 207 54.6
Gorai.009G351800 Gossypium raimondii HOM05D006500 ORTHO05D008028 5.3e-55 218.4 207 54.6
Ciclev10022516m.g Citrus clementina HOM05D006500 ORTHO05D008028 9.1e-55 217.6 224 53.6
EL10Ac3g06088 Beta vulgaris HOM05D006500 ORTHO05D008028 1.2e-54 217.2 187 58.3
Cc03_g14120 Coffea canephora HOM05D006500 ORTHO05D008028 1.2e-54 217.2 211 54.0
MELO3C022425.2 Cucumis melo HOM05D006500 ORTHO05D008028 1.6e-54 216.9 191 57.6
CsaV3_6G007030 Cucumis sativus L. HOM05D006500 ORTHO05D008028 1.6e-54 216.9 191 57.6
Nitab4.5_0002544g0040 Nicotiana tabacum HOM05D006500 ORTHO05D008028 1.6e-54 216.9 202 55.4
Lsat_1_v5_gn_1_74920 Lactuca sativa HOM05D006500 ORTHO05D008028 2.0e-54 216.5 195 54.4
Potri.013G126900 Populus trichocarpa HOM05D006500 ORTHO05D008028 2.0e-54 216.5 189 58.7
Nn1g09644 Nelumbo nucifera HOM05D006500 ORTHO05D008028 2.6e-54 216.1 189 56.6
MSTRG.4301 Avicennia marina HOM05D006500 ORTHO05D008028 4.5e-54 215.3 205 55.1
THA.LOC104800923 Tarenaya hassleriana HOM05D006500 ORTHO05D008028 4.5e-54 215.3 187 58.3
Sed0014008 Sechium edule HOM05D006500 ORTHO05D008028 5.9e-54 214.9 210 54.8
AUR62002395 Chenopodium quinoa HOM05D006500 ORTHO05D008028 7.7e-54 214.5 187 57.2
AUR62023794 Chenopodium quinoa HOM05D006500 ORTHO05D008028 7.7e-54 214.5 187 57.2
Manes.11G129200 Manihot esculenta HOM05D006500 ORTHO05D008028 1.3e-53 213.8 207 54.6
SGA_v2.0_scaffold283G46959 Striga asiatica HOM05D006500 ORTHO05D008028 1.3e-53 213.8 195 56.4
Aqoxy2G00124 Aquilegia oxysepala HOM05D006500 ORTHO05D008028 2.2e-53 213.0 201 54.2
Hma1.2p1_0108F.1_g051720 Hydrangea macrophylla HOM05D006500 ORTHO05D008028 2.2e-53 213.0 210 53.8
BolC8t47013H Brassica oleracea HOM05D006500 ORTHO05D008028 2.9e-53 212.6 211 54.0
BraA08t35535Z Brassica rapa HOM05D006500 ORTHO05D008028 2.9e-53 212.6 211 52.1
Hund03202 Selenicereus undatus HOM05D006500 ORTHO05D008028 2.9e-53 212.6 211 52.6
BcaC07g36846 Brassica carinata HOM05D006500 ORTHO05D008028 3.8e-53 212.2 211 54.0
C08p02210 Brassica napus HOM05D006500 ORTHO05D008028 3.8e-53 212.2 211 54.0
Duzib151G0460 Durio zibethinus HOM05D006500 ORTHO05D008028 3.8e-53 212.2 187 57.2
SalBow3G2241 Salvia bowleyana HOM05D006500 ORTHO05D008028 5.0e-53 211.8 192 55.7
Eucgr.A00110 Eucalyptus grandis HOM05D006500 ORTHO05D008028 1.1e-52 210.7 201 54.2
Eucgr.A00287 Eucalyptus grandis HOM05D006500 ORTHO05D008028 1.1e-52 210.7 201 54.2
BcaB03g13492 Brassica carinata HOM05D006500 ORTHO05D008028 1.5e-52 210.3 205 53.2
ECA248G2222 Erigeron canadensis HOM05D000003 ORTHO05D008028 4.2e-52 208.8 189 54.0
Oeu050336.1 Olea europaea HOM05D006500 ORTHO05D008028 5.5e-52 208.4 204 52.5
Oeu015723.1 Olea europaea HOM05D006500 ORTHO05D008028 7.2e-52 208.0 189 55.0
A08p36310 Brassica napus HOM05D006500 ORTHO05D008028 9.4e-52 207.6 211 51.2
Migut.G01179 Erythranthe guttata HOM05D006500 ORTHO05D008028 1.2e-51 207.2 189 53.4
PSO675G9108 Papaver somniferum HOM05D006500 ORTHO05D008028 3.6e-51 205.7 189 54.5
ATR0743G133 Amborella trichopoda HOM05D006500 ORTHO05D008028 4.7e-51 205.3 190 52.1
PGR083G1262 Punica granatum HOM05D006500 ORTHO05D008028 1.4e-50 203.8 189 57.1
PSO732G0103 Papaver somniferum HOM05D006500 ORTHO05D008028 1.8e-50 203.4 205 51.2
HPP92_003580 Vanilla planifolia HOM05D006500 ORTHO05D008028 8.8e-50 201.1 185 53.5
Os01g0894500 Oryza sativa ssp. japonica HOM05D006500 ORTHO05D008028 9.7e-49 197.6 207 48.3
CDE04G3295 Ceratophyllum demersum HOM05D006500 ORTHO05D008028 1.3e-48 197.2 206 49.5
Zm00001eb144900 Zea mays HOM05D006500 ORTHO05D008028 1.3e-48 197.2 203 50.7
SEGI_07767 Sequoiadendron giganteum HOM05D006500 ORTHO05D008028 6.5e-45 184.9 197 49.2
MBI08_g33171_MAGBIO Magnolia biondii HOM05D006500 ORTHO05D008028 4.7e-43 178.7 100 81.0
TPR.G23526 Trifolium pratense HOM05D006500 ORTHO05D008028 6.1e-43 178.3 97 83.5
Lj3A158T10 Lonicera japonica HOM05D006500 ORTHO05D008028 1.0e-42 177.6 173 53.8
unitig_46.g18636 Utricularia gibba HOM05D006500 ORTHO05D008028 1.4e-42 177.2 178 50.6
SMO119G0117 Selaginella moellendorffii HOM05D006500 ORTHO05D008028 6.5e-37 158.3 179 43.6
BcaC07g42121 Brassica carinata HOM05D006500 ORTHO05D008028 1.1e-36 157.5 211 43.6
Haze_01362 Corylus avellana HOM05D006500 ORTHO05D008028 1.1e-36 157.5 187 47.6
Pp3c14_2450 Physcomitrium patens HOM05D006500 ORTHO05D008028 2.5e-36 156.4 206 37.9
Nn1g09666 Nelumbo nucifera HOM05D006500 ORTHO05D008028 6.3e-32 141.7 83 75.9
Ciclev10023175m.g Citrus clementina HOM05D006500 ORTHO05D008028 1.4e-23 114.0 72 72.2
SHI33478 Sapria himalayana HOM05D000105 ORTHO05D000023 3.2e-23 112.8 83 62.7
CAN.G701.5 Capsicum annuum HOM05D006500 ORTHO05D008028 4.4e-17 92.4 86 54.7
Cre01.g038950 Chlamydomonas reinhardtii HOM05D006500 ORTHO05D008028 5.2e-10 68.9 209 27.3
MBI08_g33170_MAGBIO Magnolia biondii HOM05D006500 ORTHO05D008028 5.4e-07 58.9 33 72.7
CBR_g27901 Chara braunii HOM05D006500 ORTHO05D008028 1.6e-06 57.4 159 23.9


User provided reference genes

Program Settings