Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G1268 Fragaria x ananassa HOM05D005895 ORTHO05D007916 0.0e+00 1164.8 587 100.0
FvH4_4g25910 Fragaria vesca HOM05D005895 ORTHO05D007916 0.0e+00 1156.7 591 99.2
FAN12G2739 Fragaria x ananassa HOM05D005895 ORTHO05D007916 0.0e+00 1135.2 575 99.5
FAN07G1086 Fragaria x ananassa HOM05D005895 ORTHO05D007916 0.0e+00 1131.3 590 97.3
FAN17G0264 Fragaria x ananassa HOM05D005895 ORTHO05D007916 0.0e+00 1107.8 622 92.0
FAN22G0931 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.2e-309 1065.8 616 90.1
RcHm_v2.0_Chr4g0433361 Rosa chinensis HOM05D005895 ORTHO05D007916 4.5e-306 1053.9 603 89.9
Prupe.1G247400 Prunus persica HOM05D005895 ORTHO05D007916 6.2e-271 937.2 594 82.7
MD13G1098000 Malus domestica HOM05D005895 ORTHO05D007916 9.3e-267 923.3 597 79.6
MD16G1098900 Malus domestica HOM05D005895 ORTHO05D007916 1.2e-261 906.4 597 77.4
Haze_12237 Corylus avellana HOM05D005895 ORTHO05D007916 8.7e-257 890.2 596 76.8
Cfa009199 Carpinus fangiana HOM05D005895 ORTHO05D007916 1.6e-255 885.9 597 76.2
Thecc.02G257400 Theobroma cacao HOM05D005895 ORTHO05D007916 2.6e-253 878.6 543 80.8
CANSAT01G2589 Cannabis sativa HOM05D005895 ORTHO05D007916 1.1e-251 873.2 596 75.0
Potri.010G044900 Populus trichocarpa HOM05D005895 ORTHO05D007916 2.4e-251 872.1 589 76.2
Gohir.A04G136400 Gossypium hirsutum HOM05D005895 ORTHO05D007916 5.4e-251 870.9 594 74.4
Gorai.012G172600 Gossypium raimondii HOM05D005895 ORTHO05D007916 7.1e-251 870.5 594 74.4
CiPaw.05G183400 Carya illinoinensis HOM05D005895 ORTHO05D007916 3.5e-250 868.2 588 74.7
QL03p058522 Quercus lobata HOM05D005895 ORTHO05D007916 3.3e-248 861.7 591 75.5
COL.COLO4_24246 Corchorus olitorius HOM05D005895 ORTHO05D007916 7.4e-248 860.5 543 79.2
TPR.G34672 Trifolium pratense HOM05D005895 ORTHO05D007916 2.1e-247 859.0 593 75.2
Sabra10G0023200 Salix brachista HOM05D005895 ORTHO05D007916 8.1e-247 857.1 614 72.8
Atru.chr11.2133 Acer truncatum HOM05D005895 ORTHO05D007916 1.4e-246 856.3 598 74.4
MELO3C011963.2 Cucumis melo HOM05D005895 ORTHO05D007916 2.4e-246 855.5 547 78.2
GSVIVG01004086001 Vitis vinifera HOM05D005895 ORTHO05D007916 2.0e-245 852.4 596 72.5
Ciclev10030909m.g Citrus clementina HOM05D005895 ORTHO05D007916 2.6e-245 852.0 597 74.2
Cpa.g.sc33.4 Carica papaya HOM05D005895 ORTHO05D007916 4.5e-245 851.3 537 79.9
TAR371G0306 Trochodendron aralioides HOM05D005895 ORTHO05D007916 4.5e-245 851.3 542 78.2
Atru.chr11.2117 Acer truncatum HOM05D005895 ORTHO05D007916 1.0e-244 850.1 598 73.9
Actinidia27801 Actinidia chinensis HOM05D005895 ORTHO05D007916 1.7e-244 849.4 595 73.4
CSS0018548 Camellia sinensis var. sinensis HOM05D005895 ORTHO05D007916 1.7e-244 849.4 600 73.3
TWI36G0590 Tripterygium wilfordii HOM05D005895 ORTHO05D007916 1.1e-243 846.7 594 74.4
Solyc04g025540.3 Solanum lycopersicum HOM05D005895 ORTHO05D007916 1.9e-243 845.9 593 72.2
Gohir.D04G179500 Gossypium hirsutum HOM05D005895 ORTHO05D007916 3.2e-243 845.1 576 74.8
Eucgr.H02516 Eucalyptus grandis HOM05D005895 ORTHO05D007916 4.2e-243 844.7 592 73.3
PGR119G2505 Punica granatum HOM05D005895 ORTHO05D007916 4.2e-243 844.7 544 77.8
Medtr8g069525 Medicago truncatula HOM05D005895 ORTHO05D007916 5.5e-243 844.3 592 74.3
CsaV3_5G031240 Cucumis sativus L. HOM05D005895 ORTHO05D007916 7.1e-243 844.0 547 77.0
BcaB05g24593 Brassica carinata HOM05D005895 ORTHO05D007916 1.6e-242 842.8 604 72.4
MBI10_g00734_MAGBIO Magnolia biondii HOM05D005895 ORTHO05D007916 6.0e-242 840.9 594 72.9
Sp5g25720 Schrenkiella parvula HOM05D005895 ORTHO05D007916 6.0e-242 840.9 543 77.3
Aa31LG4G10380 Aethionema arabicum HOM05D005895 ORTHO05D007916 7.9e-242 840.5 547 76.4
arahy.Tifrunner.gnm1.ann1.LQ91H7 Arachis hypogaea HOM05D005895 ORTHO05D007916 7.9e-242 840.5 590 73.6
CAN.G7.20 Capsicum annuum HOM05D005895 ORTHO05D007916 1.3e-241 839.7 546 76.4
Sopen04g012770 Solanum pennellii HOM05D005895 ORTHO05D007916 3.0e-241 838.6 587 72.9
Glyma.08G283100 Glycine max HOM05D005895 ORTHO05D007916 3.9e-241 838.2 585 73.0
DCAR_007061 Daucus carota HOM05D005895 ORTHO05D007916 1.5e-240 836.3 543 76.6
Lj6A811T72 Lonicera japonica HOM05D005895 ORTHO05D007916 4.3e-240 834.7 544 76.5
THA.LOC104822982 Tarenaya hassleriana HOM05D005895 ORTHO05D007916 2.1e-239 832.4 605 71.7
Sed0023548 Sechium edule HOM05D005895 ORTHO05D007916 3.7e-239 831.6 547 77.0
A02p16660 Brassica napus HOM05D005895 ORTHO05D007916 4.8e-239 831.2 598 71.7
C02p27920 Brassica napus HOM05D005895 ORTHO05D007916 4.8e-239 831.2 605 71.6
BolC2t08837H Brassica oleracea HOM05D005895 ORTHO05D007916 4.8e-239 831.2 605 71.6
AT1G70570 Arabidopsis thaliana HOM05D005895 ORTHO05D007916 8.2e-239 830.5 601 71.4
BraA02t06722Z Brassica rapa HOM05D005895 ORTHO05D007916 8.2e-239 830.5 598 71.7
Thhalv10018314m.g Eutrema salsugineum HOM05D005895 ORTHO05D007916 1.1e-238 830.1 602 70.9
Lj4g0008127 Lotus japonicus HOM05D005895 ORTHO05D007916 1.1e-238 830.1 591 73.1
Carub.0002s1729 Capsella rubella HOM05D005895 ORTHO05D007916 1.4e-238 829.7 546 75.5
AL2G29960 Arabidopsis lyrata HOM05D005895 ORTHO05D007916 2.4e-238 828.9 546 76.2
Gorai.005G179700 Gossypium raimondii HOM05D005895 ORTHO05D007916 2.4e-238 828.9 590 72.7
Lalb_Chr05g0228401 Lupinus albus HOM05D005895 ORTHO05D007916 4.1e-238 828.2 585 73.7
CARHR063780 Cardamine hirsuta HOM05D005895 ORTHO05D007916 5.8e-237 824.3 543 75.5
Cc04_g11160 Coffea canephora HOM05D005895 ORTHO05D007916 8.4e-236 820.5 541 76.0
PSO017G6602 Papaver somniferum HOM05D005895 ORTHO05D007916 8.4e-236 820.5 597 72.0
vmacro01130 Vaccinium macrocarpon HOM05D005895 ORTHO05D007916 1.9e-235 819.3 642 68.1
BcaC03g15207 Brassica carinata HOM05D005895 ORTHO05D007916 4.2e-235 818.1 593 72.3
AUR62024296 Chenopodium quinoa HOM05D005895 ORTHO05D007916 7.1e-235 817.4 598 70.9
SalBow8G2958 Salvia bowleyana HOM05D005895 ORTHO05D007916 1.6e-234 816.2 591 69.9
Hund06020 Selenicereus undatus HOM05D005895 ORTHO05D007916 2.1e-234 815.8 521 77.4
VMungo0251G0514 Vigna mungo HOM05D005895 ORTHO05D007916 2.1e-234 815.8 593 71.0
PSO478G2260 Papaver somniferum HOM05D005895 ORTHO05D007916 2.7e-234 815.5 597 71.9
Aqoxy5G03807 Aquilegia oxysepala HOM05D005895 ORTHO05D007916 1.3e-233 813.1 556 74.5
ECA233G5390 Erigeron canadensis HOM05D005895 ORTHO05D007916 5.1e-233 811.2 584 70.5
AUR62005446 Chenopodium quinoa HOM05D005895 ORTHO05D007916 3.3e-232 808.5 596 70.1
Migut.E00194 Erythranthe guttata HOM05D005895 ORTHO05D007916 1.6e-231 806.2 552 74.1
EL10Ac6g13787 Beta vulgaris HOM05D005895 ORTHO05D007916 1.4e-230 803.1 605 69.1
Nitab4.5_0006332g0030 Nicotiana tabacum HOM05D005895 ORTHO05D007916 1.2e-229 800.0 588 69.9
Ah.03g133150 Amaranthus hybridus HOM05D005895 ORTHO05D007916 1.7e-228 796.2 601 69.2
HanXRQChr08g0208071 Helianthus annuus HOM05D005895 ORTHO05D007916 5.0e-228 794.7 544 72.2
Sc04g0009430 Simmondsia chinensis HOM05D005895 ORTHO05D007916 5.5e-227 791.2 526 76.0
Gohir.D02G159600 Gossypium hirsutum HOM05D005895 ORTHO05D007916 1.4e-225 786.6 523 76.5
Aqoxy3G01161 Aquilegia oxysepala HOM05D005895 ORTHO05D007916 1.2e-221 773.5 574 68.3
HPP92_003081 Vanilla planifolia HOM05D005895 ORTHO05D007916 7.2e-219 764.2 522 72.6
ClCG05G025660 Citrullus lanatus HOM05D005895 ORTHO05D007916 2.7e-218 762.3 547 72.2
Nn4g22655 Nelumbo nucifera HOM05D005895 ORTHO05D007916 1.4e-217 760.0 595 66.9
Nitab4.5_0000370g0030 Nicotiana tabacum HOM05D005895 ORTHO05D007916 6.7e-217 757.7 587 67.5
Manes.12G024300 Manihot esculenta HOM05D005895 ORTHO05D007916 2.0e-216 756.1 514 76.3
Os02g0131200 Oryza sativa ssp. japonica HOM05D005895 ORTHO05D007916 6.3e-215 751.1 520 72.1
ATR0585G083 Amborella trichopoda HOM05D005895 ORTHO05D007916 1.2e-213 746.9 528 72.0
Lsat_1_v5_gn_8_150700 Lactuca sativa HOM05D005895 ORTHO05D007916 2.6e-213 745.7 597 66.5
Zm00001eb231230 Zea mays HOM05D005895 ORTHO05D007916 3.5e-213 745.3 594 65.0
Phvul.003G063900 Phaseolus vulgaris HOM05D005895 ORTHO05D007916 6.1e-210 734.6 463 77.5
Psat0s3772g0040 Pisum sativum HOM05D005895 ORTHO05D007916 5.2e-209 731.5 522 72.6
Ca_22578_v3 Cicer arietinum L. HOM05D005895 ORTHO05D007916 2.0e-208 729.6 522 72.2
arahy.Tifrunner.gnm1.ann1.0I87EX Arachis hypogaea HOM05D005895 ORTHO05D007916 4.4e-208 728.4 519 73.0
Manes.13G025800 Manihot esculenta HOM05D005895 ORTHO05D007916 1.1e-206 723.8 513 73.9
MSTRG.2417 Avicennia marina HOM05D005895 ORTHO05D007916 3.0e-201 705.7 444 77.5
Gohir.A03G136300 Gossypium hirsutum HOM05D005895 ORTHO05D007916 2.0e-197 693.0 494 70.9
Duzib251G0200 Durio zibethinus HOM05D005895 ORTHO05D007916 4.0e-193 678.7 591 62.9
Oeu059911.1 Olea europaea HOM05D005895 ORTHO05D007916 8.3e-191 671.0 531 66.7
THA.LOC104818151 Tarenaya hassleriana HOM05D005895 ORTHO05D007916 7.0e-190 667.9 501 70.7
unitig_52.g17177 Utricularia gibba HOM05D005895 ORTHO05D007916 1.2e-189 667.2 566 62.4
Mapoly0129s0050 Marchantia polymorpha HOM05D005895 ORTHO05D007916 2.0e-189 666.4 543 63.2
Sed0009772 Sechium edule HOM05D005895 ORTHO05D007916 3.3e-187 659.1 497 70.2
Pp3c12_14340 Physcomitrium patens HOM05D005895 ORTHO05D007916 1.7e-183 646.7 512 63.9
Zm00001eb209010 Zea mays HOM05D005895 ORTHO05D007916 8.3e-183 644.4 520 63.3
SMO119G0060 Selaginella moellendorffii HOM05D005895 ORTHO05D007916 1.4e-177 627.1 507 64.3
Peaxi162Scf01242g00143 Petunia axillaris HOM05D005895 ORTHO05D007916 1.6e-173 613.6 380 78.4
AagrBONN_evm.TU.Sc2ySwM_368.1304 Anthoceros agrestis HOM05D005895 ORTHO05D007916 5.4e-158 562.0 449 63.0
Dinv24803 Davidia involucrata HOM05D005895 ORTHO05D007916 1.3e-148 530.8 391 71.1
Pp3c10_19590 Physcomitrium patens HOM05D005895 ORTHO05D007916 4.2e-118 429.5 326 64.4
FAN18G3006 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.4e-105 387.9 197 96.4
SHI17741 Sapria himalayana HOM05D000002 ORTHO05D000001 9.1e-89 332.0 446 46.4
CBR_g37586 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-63 248.4 267 50.2
CBR_g37584 Chara braunii HOM05D000019 ORTHO05D000048 4.6e-56 223.4 206 54.4
Peaxi162Scf02256g00001 Petunia axillaris HOM05D005895 ORTHO05D007916 8.1e-53 212.6 143 72.7
SEGI_05407 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 9.8e-51 205.7 141 73.8
BcaB08g34808 Brassica carinata HOM05D005895 ORTHO05D007916 4.3e-38 163.7 101 73.3
SEGI_24305 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 4.9e-34 150.2 100 70.0
SEGI_08481 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 7.1e-33 146.4 101 65.3
DCAR_028023 Daucus carota HOM05D005895 ORTHO05D007916 1.9e-25 121.7 78 79.5
Rhsim12G0041200 Rhododendron simsii HOM05D005895 ORTHO05D007916 1.0e-23 115.9 68 75.0
SMO163G0072 Selaginella moellendorffii HOM05D005895 ORTHO05D007916 1.9e-22 111.7 138 47.8
Ah.07g201790 Amaranthus hybridus HOM05D005895 ORTHO05D007916 5.6e-22 110.2 66 75.8
BcaB05g24594 Brassica carinata HOM05D005895 ORTHO05D012801 1.8e-20 105.1 73 64.4
A02p16670 Brassica napus HOM05D005895 ORTHO05D012801 1.3e-18 99.0 65 70.8
BraA02t06723Z Brassica rapa HOM05D005895 ORTHO05D012801 1.3e-18 99.0 65 70.8
C02p27930 Brassica napus HOM05D005895 ORTHO05D012801 6.4e-18 96.7 68 67.6
BolC2t08838H Brassica oleracea HOM05D005895 ORTHO05D012801 6.4e-18 96.7 68 67.6
DCAR_029453 Daucus carota HOM05D005895 ORTHO05D007916 1.3e-15 89.0 70 67.1
Gorai.012G172500 Gossypium raimondii HOM05D005895 ORTHO05D007916 1.1e-14 85.9 53 77.4
CSS0038190 Camellia sinensis var. sinensis HOM05D033929 ORTHO05D026310 2.0e-11 75.1 66 56.1
SEGI_38231 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 1.9e-06 58.5 40 67.5
CDE06G1756 Ceratophyllum demersum HOM05D005895 ORTHO05D007916 3.3e-06 57.8 101 39.6


User provided reference genes

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