Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G1264 Fragaria x ananassa HOM05D007103 ORTHO05D008948 9.5e-251 869.8 460 100.0
FAN07G2615 Fragaria x ananassa HOM05D007103 ORTHO05D008948 1.1e-246 856.3 460 98.0
FAN17G1256 Fragaria x ananassa HOM05D007103 ORTHO05D008948 9.2e-246 853.2 461 98.0
RcHm_v2.0_Chr4g0446051 Rosa chinensis HOM05D007103 ORTHO05D008948 1.1e-206 723.4 470 83.4
FvH4_4g36300 Fragaria vesca HOM05D007103 ORTHO05D008948 5.0e-191 671.4 342 100.0
FAN22G0934 Fragaria x ananassa HOM05D007103 ORTHO05D008948 1.7e-183 646.4 393 86.3
Prupe.1G342500 Prunus persica HOM05D007103 ORTHO05D008948 2.0e-163 579.7 478 68.4
MD13G1010500 Malus domestica HOM05D007103 ORTHO05D008948 5.0e-159 565.1 480 66.2
GSVIVG01010248001 Vitis vinifera HOM05D007103 ORTHO05D008948 6.6e-151 538.1 476 64.5
Cfa015108 Carpinus fangiana HOM05D007103 ORTHO05D008948 4.9e-146 521.9 473 64.9
Thecc.02G296200 Theobroma cacao HOM05D007103 ORTHO05D008948 1.2e-144 517.3 471 63.1
Haze_01571 Corylus avellana HOM05D007103 ORTHO05D008948 2.3e-143 513.1 473 64.7
Manes.10G065901 Manihot esculenta HOM05D007103 ORTHO05D008948 3.0e-143 512.7 474 62.4
TWI74G0969 Tripterygium wilfordii HOM05D007103 ORTHO05D008948 8.6e-143 511.1 474 62.9
PGR044G1063 Punica granatum HOM05D007103 ORTHO05D008948 1.2e-141 507.3 463 64.1
QL03p041867 Quercus lobata HOM05D007103 ORTHO05D008948 1.0e-140 504.2 470 64.9
Sabra08G0108900 Salix brachista HOM05D007103 ORTHO05D008948 2.0e-139 500.0 453 60.7
MELO3C005211.2 Cucumis melo HOM05D007103 ORTHO05D008948 4.4e-139 498.8 473 62.4
Ciclev10005118m.g Citrus clementina HOM05D007103 ORTHO05D008948 1.4e-137 493.8 407 68.6
Sed0022925 Sechium edule HOM05D007103 ORTHO05D008948 7.0e-137 491.5 473 60.5
Gorai.002G168100 Gossypium raimondii HOM05D007103 ORTHO05D008948 1.2e-136 490.7 470 61.1
Gohir.D01G137900 Gossypium hirsutum HOM05D007103 ORTHO05D008948 1.6e-136 490.3 470 61.1
Lj3A854G74 Lonicera japonica HOM05D007103 ORTHO05D008948 2.7e-136 489.6 489 58.9
CsaV3_5G017430 Cucumis sativus L. HOM05D007103 ORTHO05D008948 8.6e-135 484.6 473 60.5
COL.COLO4_27515 Corchorus olitorius HOM05D007103 ORTHO05D008948 3.3e-134 482.6 468 58.3
Dinv06214 Davidia involucrata HOM05D007103 ORTHO05D008948 3.3e-134 482.6 473 61.3
TAR371G1171 Trochodendron aralioides HOM05D007103 ORTHO05D008948 3.3e-134 482.6 473 59.0
Gohir.A01G145152 Gossypium hirsutum HOM05D007103 ORTHO05D008948 1.2e-133 480.7 470 59.6
Rhsim04G0168800 Rhododendron simsii HOM05D007103 ORTHO05D008948 5.2e-132 475.3 532 52.1
Glyma.05G135400 Glycine max HOM05D007103 ORTHO05D008948 2.0e-131 473.4 475 58.3
Eucgr.B02623 Eucalyptus grandis HOM05D007103 ORTHO05D008948 9.8e-131 471.1 466 60.5
MSTRG.2093 Avicennia marina HOM05D007103 ORTHO05D008948 3.7e-130 469.2 463 57.0
Potri.008G143700 Populus trichocarpa HOM05D007103 ORTHO05D008948 2.4e-129 466.5 433 60.7
Nn3g18722 Nelumbo nucifera HOM05D007103 ORTHO05D008948 1.5e-126 457.2 441 61.2
CAN.G458.2 Capsicum annuum HOM05D007103 ORTHO05D008948 8.1e-125 451.4 411 61.3
HanXRQChr14g0446891 Helianthus annuus HOM05D007103 ORTHO05D008948 8.1e-125 451.4 469 55.9
arahy.Tifrunner.gnm1.ann1.U7H2Z0 Arachis hypogaea HOM05D007103 ORTHO05D008948 1.8e-124 450.3 470 57.0
arahy.Tifrunner.gnm1.ann1.CDY64E Arachis hypogaea HOM05D007103 ORTHO05D008948 4.0e-124 449.1 470 56.8
CANSAT78G0644 Cannabis sativa HOM05D007103 ORTHO05D008948 8.9e-124 448.0 477 58.9
Sopen04g003720 Solanum pennellii HOM05D007103 ORTHO05D008948 2.6e-123 446.4 475 57.3
Solyc04g008560.3 Solanum lycopersicum HOM05D007103 ORTHO05D008948 7.6e-123 444.9 475 57.1
PSO478G2004 Papaver somniferum HOM05D007103 ORTHO05D008948 9.9e-123 444.5 472 55.5
PGSC0003DMG400031375 Solanum tuberosum HOM05D007103 ORTHO05D008948 3.8e-122 442.6 475 56.8
THA.LOC104805941 Tarenaya hassleriana HOM05D007103 ORTHO05D008948 4.9e-122 442.2 475 57.5
HPP92_022082 Vanilla planifolia HOM05D007103 ORTHO05D008948 1.1e-121 441.0 473 55.0
Migut.E00576 Erythranthe guttata HOM05D007103 ORTHO05D008948 4.1e-121 439.1 487 53.2
Peaxi162Scf00329g00938 Petunia axillaris HOM05D007103 ORTHO05D008948 5.4e-121 438.7 471 55.2
CSS0049146 Camellia sinensis var. sinensis HOM05D007103 ORTHO05D008948 3.5e-120 436.0 461 57.3
Ca_18212_v3 Cicer arietinum L. HOM05D007103 ORTHO05D008948 5.6e-118 428.7 467 55.5
ATR0618G149 Amborella trichopoda HOM05D007103 ORTHO05D008948 9.6e-118 427.9 474 54.6
Nitab4.5_0000129g0430 Nicotiana tabacum HOM05D007103 ORTHO05D008948 1.2e-117 427.6 476 55.7
SGA_v2.0_scaffold127G33990 Striga asiatica HOM05D007103 ORTHO05D008948 1.2e-117 427.6 463 53.6
Lalb_Chr13g0293061 Lupinus albus HOM05D007103 ORTHO05D008948 2.1e-117 426.8 467 54.0
DCAR_030327 Daucus carota HOM05D007103 ORTHO05D008948 2.8e-117 426.4 472 53.2
AL5G11410 Arabidopsis lyrata HOM05D007103 ORTHO05D008948 8.1e-117 424.9 474 56.8
Psat7g086680 Pisum sativum HOM05D007103 ORTHO05D008948 1.1e-116 424.5 467 54.2
Lj4g0001083 Lotus japonicus HOM05D007103 ORTHO05D008948 3.1e-116 422.9 479 55.3
Carub.0005s0121 Capsella rubella HOM05D007103 ORTHO05D008948 4.0e-116 422.5 466 56.7
Nitab4.5_0007973g0020 Nicotiana tabacum HOM05D007103 ORTHO05D008948 4.0e-116 422.5 469 53.9
Sp2g13560 Schrenkiella parvula HOM05D007103 ORTHO05D008948 7.6e-115 418.3 476 55.9
unitig_8.g4025 Utricularia gibba HOM05D007103 ORTHO05D008948 9.9e-115 417.9 465 53.1
CDE08G0078 Ceratophyllum demersum HOM05D007103 ORTHO05D008948 1.1e-113 414.5 482 51.9
Glyma.08G090600 Glycine max HOM05D007103 ORTHO05D008948 1.4e-113 414.1 408 58.1
Sc03g0005470 Simmondsia chinensis HOM05D007103 ORTHO05D008948 1.0e-111 407.9 432 54.6
Aa31LG2G7810 Aethionema arabicum HOM05D007103 ORTHO05D008948 5.6e-110 402.1 451 57.4
vmacro08589 Vaccinium macrocarpon HOM05D007103 ORTHO05D008948 1.3e-109 401.0 355 61.1
BcaB07g30707 Brassica carinata HOM05D007103 ORTHO05D008948 3.6e-109 399.4 475 53.5
AT2G02148 Arabidopsis thaliana HOM05D007103 ORTHO05D008948 1.8e-108 397.1 473 55.0
TPR.G34765 Trifolium pratense HOM05D007103 ORTHO05D008948 2.6e-107 393.3 466 50.9
CARHR144820 Cardamine hirsuta HOM05D007103 ORTHO05D008948 4.5e-107 392.5 472 55.1
Aqoxy3G00022 Aquilegia oxysepala HOM05D007103 ORTHO05D008948 4.9e-106 389.0 404 58.2
ECA246G2851 Erigeron canadensis HOM05D007103 ORTHO05D008948 2.4e-105 386.7 455 49.9
CiPaw.05G161900 Carya illinoinensis HOM05D007103 ORTHO05D008948 4.2e-105 386.0 338 62.7
AUR62003469 Chenopodium quinoa HOM05D007103 ORTHO05D008948 4.2e-105 386.0 425 53.4
ClCG01G007020 Citrullus lanatus HOM05D007103 ORTHO05D008948 9.3e-105 384.8 349 58.7
Lsat_1_v5_gn_3_27560 Lactuca sativa HOM05D007103 ORTHO05D008948 9.3e-105 384.8 467 53.3
Thhalv10004194m.g Eutrema salsugineum HOM05D007103 ORTHO05D008948 1.6e-104 384.0 476 54.4
MBI06_g12320_MAGBIO Magnolia biondii HOM05D007103 ORTHO05D008948 1.5e-102 377.5 342 61.4
BcaC04g21529 Brassica carinata HOM05D007103 ORTHO05D008948 3.3e-102 376.3 468 52.1
BolC9t55934H Brassica oleracea HOM05D007103 ORTHO05D008948 9.6e-102 374.8 471 51.2
Phvul.002G186800 Phaseolus vulgaris HOM05D007103 ORTHO05D008948 9.6e-102 374.8 462 50.4
A09p23820 Brassica napus HOM05D007103 ORTHO05D008948 2.8e-101 373.2 471 51.4
C09p30690 Brassica napus HOM05D007103 ORTHO05D008948 3.7e-101 372.9 470 51.5
BraA09t37988Z Brassica rapa HOM05D007103 ORTHO05D008948 1.1e-100 371.3 471 51.4
Zm00001eb228800 Zea mays HOM05D007103 ORTHO05D008948 5.3e-100 369.0 404 51.7
EL10Ac6g15409 Beta vulgaris HOM05D007103 ORTHO05D008948 5.8e-99 365.5 536 44.8
AUR62017776 Chenopodium quinoa HOM05D007103 ORTHO05D008948 7.6e-99 365.2 430 50.5
Ciclev10010767m.g Citrus clementina HOM05D007103 ORTHO05D008948 7.9e-96 355.1 262 68.3
Actinidia32355 Actinidia chinensis HOM05D007103 ORTHO05D008948 1.3e-93 347.8 366 55.7
PSO017G4620 Papaver somniferum HOM05D007103 ORTHO05D008948 1.8e-92 344.0 393 50.9
VMungo0251G2627 Vigna mungo HOM05D007103 ORTHO05D008948 2.5e-86 323.6 402 50.7
BcaB07g30709 Brassica carinata HOM05D007103 ORTHO05D008948 2.9e-82 310.1 380 47.6
SEGI_34932 Sequoiadendron giganteum HOM05D007103 ORTHO05D008948 7.4e-78 295.4 365 47.9
Mapoly0001s0015 Marchantia polymorpha HOM05D007103 ORTHO05D008948 1.1e-73 281.6 486 41.4
SalBow2G1702 Salvia bowleyana HOM05D007103 ORTHO05D008948 2.7e-72 276.9 280 56.1
Pp3c5_2140 Physcomitrium patens HOM05D007103 ORTHO05D008948 3.6e-72 276.6 474 43.9
Pp3c6_26300 Physcomitrium patens HOM05D007103 ORTHO05D008948 9.7e-70 268.5 473 42.5
Atru.chr11.1054 Acer truncatum HOM05D007103 ORTHO05D008948 2.4e-68 263.8 441 44.4
Actinidia25204 Actinidia chinensis HOM05D007103 ORTHO05D008948 1.3e-66 258.1 178 71.3
SMO358G0481 Selaginella moellendorffii HOM05D007103 ORTHO05D008948 2.2e-66 257.3 457 38.7
Actinidia31381 Actinidia chinensis HOM05D007103 ORTHO05D008948 2.3e-55 220.7 398 44.2
AagrBONN_evm.TU.Sc2ySwM_368.3256 Anthoceros agrestis HOM05D007103 ORTHO05D008948 7.0e-52 209.1 226 49.1
CBR_g70721 Chara braunii HOM05D007103 ORTHO05D008948 1.3e-50 204.9 418 35.4
Medtr5g010860 Medicago truncatula HOM05D007103 ORTHO05D008948 5.2e-47 193.0 176 60.8
Cpa.g.sc2.105 Carica papaya HOM05D007103 ORTHO05D008948 7.2e-41 172.6 225 51.6
Pp3c6_29570 Physcomitrium patens HOM05D007103 ORTHO05D008948 5.6e-33 146.4 195 45.6
Hund18263 Selenicereus undatus HOM05D007103 ORTHO05D008948 2.7e-27 127.5 186 45.7
Lsat_1_v5_gn_3_133181 Lactuca sativa HOM05D003297 ORTHO05D004027 4.9e-21 106.7 219 36.1
Cpa.g.sc2.103 Carica papaya HOM05D007103 ORTHO05D008948 8.3e-13 79.3 76 56.6
Medtr6g043130 Medicago truncatula HOM05D007103 ORTHO05D008948 4.3e-09 67.0 42 73.8


User provided reference genes

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