Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G1261 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.5e-69 266.2 142 100.0
FvH4_4g37090 Fragaria vesca HOM05D004221 ORTHO05D004998 5.6e-69 264.2 142 99.3
FAN17G0592 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.0e-67 258.1 142 95.1
FAN10G4155 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.2e-66 256.5 142 94.4
FAN07G0046 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.5e-66 256.1 142 95.8
FAN03G0273 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.0e-66 255.8 142 93.7
FAN23G3078 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.0e-66 255.8 142 93.7
RcHm_v2.0_Chr4g0446851 Rosa chinensis HOM05D004221 ORTHO05D004998 1.3e-65 253.1 142 93.7
FAN15G1018 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.7e-65 252.7 142 93.0
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.3e-61 238.4 142 89.4
Prupe.1G348800 Prunus persica HOM05D004221 ORTHO05D004998 9.7e-61 236.9 140 88.6
FAN10G1077 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.6e-60 236.1 142 88.0
FAN17G2528 Fragaria x ananassa HOM05D004221 ORTHO05D004998 8.2e-60 233.8 142 88.0
PGR044G1895 Punica granatum HOM05D004221 ORTHO05D004998 6.9e-59 230.7 140 85.0
MD16G1003800 Malus domestica HOM05D004221 ORTHO05D004998 2.6e-58 228.8 142 84.5
MD13G1003600 Malus domestica HOM05D004221 ORTHO05D004998 1.0e-57 226.9 137 86.1
COL.COLO4_33086 Corchorus olitorius HOM05D004221 ORTHO05D004998 1.4e-56 223.0 140 79.3
CANSAT78G1084 Cannabis sativa HOM05D004221 ORTHO05D004998 1.9e-56 222.6 142 81.7
Cfa008767 Carpinus fangiana HOM05D004221 ORTHO05D004998 1.9e-56 222.6 139 81.3
Eucgr.J00883 Eucalyptus grandis HOM05D004221 ORTHO05D004998 1.9e-56 222.6 140 82.9
Ciclev10032992m.g Citrus clementina HOM05D004221 ORTHO05D004998 2.5e-56 222.2 140 80.7
Nn3g18605 Nelumbo nucifera HOM05D004221 ORTHO05D004998 2.5e-56 222.2 140 80.7
ECA232G2799 Erigeron canadensis HOM05D004221 ORTHO05D004998 7.2e-56 220.7 140 80.0
Gorai.002G015400 Gossypium raimondii HOM05D004221 ORTHO05D004998 7.2e-56 220.7 140 80.0
Nitab4.5_0013217g0020 Nicotiana tabacum HOM05D004221 ORTHO05D004998 7.2e-56 220.7 142 78.9
Hund24383 Selenicereus undatus HOM05D004221 ORTHO05D004998 7.2e-56 220.7 140 81.4
CAN.G282.46 Capsicum annuum HOM05D004221 ORTHO05D004998 9.3e-56 220.3 139 79.1
Gohir.A01G012400 Gossypium hirsutum HOM05D004221 ORTHO05D004998 9.3e-56 220.3 140 79.3
Gohir.D01G013600 Gossypium hirsutum HOM05D004221 ORTHO05D004998 9.3e-56 220.3 140 79.3
CiPaw.06G062100 Carya illinoinensis HOM05D004221 ORTHO05D004998 1.2e-55 219.9 139 79.9
Thecc.02G156600 Theobroma cacao HOM05D004221 ORTHO05D004998 1.2e-55 219.9 140 76.4
Lsat_1_v5_gn_4_64581 Lactuca sativa HOM05D004221 ORTHO05D004998 2.7e-55 218.8 140 80.0
PGSC0003DMG400016397 Solanum tuberosum HOM05D004221 ORTHO05D004998 6.1e-55 217.6 139 78.4
Manes.11G108400 Manihot esculenta HOM05D004221 ORTHO05D004998 7.9e-55 217.2 140 78.6
Solyc01g008270.3 Solanum lycopersicum HOM05D004221 ORTHO05D004998 7.9e-55 217.2 139 78.4
Sopen01g003790 Solanum pennellii HOM05D004221 ORTHO05D004998 7.9e-55 217.2 139 78.4
EL10Ac9g22978 Beta vulgaris HOM05D004221 ORTHO05D004998 1.0e-54 216.9 140 81.4
Lalb_Chr06g0163921 Lupinus albus HOM05D004221 ORTHO05D004998 1.0e-54 216.9 140 77.1
AUR62032953 Chenopodium quinoa HOM05D004221 ORTHO05D004998 1.3e-54 216.5 140 80.0
Potri.005G090100 Populus trichocarpa HOM05D004221 ORTHO05D004998 1.3e-54 216.5 140 75.7
THA.LOC104800677 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 1.3e-54 216.5 137 77.4
Migut.E00685 Erythranthe guttata HOM05D004221 ORTHO05D004998 3.0e-54 215.3 139 79.1
Actinidia04331 Actinidia chinensis HOM05D004221 ORTHO05D004998 3.9e-54 214.9 138 78.3
Glyma.20G103300 Glycine max HOM05D004221 ORTHO05D004998 3.9e-54 214.9 140 77.9
Hma1.2p1_0513F.1_g169420 Hydrangea macrophylla HOM05D004221 ORTHO05D004998 5.1e-54 214.5 137 78.8
RcHm_v2.0_Chr2g0169341 Rosa chinensis HOM05D004221 ORTHO05D004998 5.1e-54 214.5 114 96.5
RcHm_v2.0_Chr6g0253901 Rosa chinensis HOM05D004221 ORTHO05D004998 5.1e-54 214.5 114 96.5
HPP92_005060 Vanilla planifolia HOM05D004221 ORTHO05D004998 1.1e-53 213.4 140 75.7
HanXRQChr04g0111871 Helianthus annuus HOM05D004221 ORTHO05D004998 1.5e-53 213.0 140 78.6
PSO017G5121 Papaver somniferum HOM05D004221 ORTHO05D004998 1.5e-53 213.0 138 79.7
RcHm_v2.0_Chr4g0389221 Rosa chinensis HOM05D004221 ORTHO05D004998 1.5e-53 213.0 114 95.6
Medtr1g114500 Medicago truncatula HOM05D004221 ORTHO05D004998 1.9e-53 212.6 140 75.7
Potri.007G074042 Populus trichocarpa HOM05D004221 ORTHO05D004998 1.9e-53 212.6 140 74.3
RcHm_v2.0_Chr1g0343381 Rosa chinensis HOM05D004221 ORTHO05D004998 1.9e-53 212.6 114 95.6
Duzib132G0545 Durio zibethinus HOM05D004221 ORTHO05D004998 2.5e-53 212.2 140 74.3
Duzib132G0858 Durio zibethinus HOM05D004221 ORTHO05D004998 2.5e-53 212.2 140 74.3
PSO170G6579 Papaver somniferum HOM05D004221 ORTHO05D004998 3.3e-53 211.8 138 79.7
CsaV3_5G020730 Cucumis sativus L. HOM05D004221 ORTHO05D004998 4.3e-53 211.5 136 76.5
TAR629G3528 Trochodendron aralioides HOM05D004221 ORTHO05D004998 9.7e-53 210.3 140 77.1
GSVIVG01026144001 Vitis vinifera HOM05D004221 ORTHO05D004998 9.7e-53 210.3 137 76.6
Actinidia04067 Actinidia chinensis HOM05D004221 ORTHO05D004998 1.3e-52 209.9 137 77.4
Psat6g233960 Pisum sativum HOM05D004221 ORTHO05D004998 1.3e-52 209.9 140 74.3
RcHm_v2.0_Chr5g0039981 Rosa chinensis HOM05D004221 ORTHO05D004998 1.3e-52 209.9 114 94.7
Sc26g0002050 Simmondsia chinensis HOM05D004221 ORTHO05D004998 1.3e-52 209.9 140 77.1
TWI77G0364 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 1.3e-52 209.9 140 75.0
Lj5g0004809 Lotus japonicus HOM05D004221 ORTHO05D004998 1.6e-52 209.5 140 75.7
RcHm_v2.0_Chr4g0391701 Rosa chinensis HOM05D004221 ORTHO05D004998 1.6e-52 209.5 114 94.7
TAR629G0713 Trochodendron aralioides HOM05D004221 ORTHO05D004998 1.6e-52 209.5 140 76.4
RcHm_v2.0_Chr4g0391031 Rosa chinensis HOM05D004221 ORTHO05D004998 2.2e-52 209.1 114 93.9
Sed0003164 Sechium edule HOM05D004221 ORTHO05D004998 2.2e-52 209.1 136 76.5
VMungo0720G0328 Vigna mungo HOM05D004221 ORTHO05D004998 2.2e-52 209.1 140 75.0
RcHm_v2.0_Chr5g0070771 Rosa chinensis HOM05D004221 ORTHO05D004998 2.8e-52 208.8 114 93.9
THA.LOC104818379 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 2.8e-52 208.8 141 75.2
Carub.0006s2106 Capsella rubella HOM05D004221 ORTHO05D004998 3.7e-52 208.4 140 74.3
AUR62017728 Chenopodium quinoa HOM05D004221 ORTHO05D004998 3.7e-52 208.4 140 79.3
Glyma.10G286000 Glycine max HOM05D004221 ORTHO05D004998 3.7e-52 208.4 140 75.7
AT5G23290 Arabidopsis thaliana HOM05D004221 ORTHO05D004998 4.8e-52 208.0 140 74.3
MSTRG.13679 Avicennia marina HOM05D004221 ORTHO05D004998 4.8e-52 208.0 139 76.3
Phvul.007G014900 Phaseolus vulgaris HOM05D004221 ORTHO05D004998 4.8e-52 208.0 140 74.3
TWI74G0522 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 4.8e-52 208.0 140 73.6
Os10g0488100 Oryza sativa ssp. japonica HOM05D004221 ORTHO05D004998 6.3e-52 207.6 139 76.3
TPR.G4058 Trifolium pratense HOM05D004221 ORTHO05D004998 6.3e-52 207.6 140 73.6
Aqoxy3G04291 Aquilegia oxysepala HOM05D004221 ORTHO05D004998 8.2e-52 207.2 140 75.0
FAN07G1220 Fragaria x ananassa HOM05D004221 ORTHO05D004998 8.2e-52 207.2 113 93.8
CARHR190250 Cardamine hirsuta HOM05D004221 ORTHO05D004998 1.1e-51 206.8 140 73.6
arahy.Tifrunner.gnm1.ann1.8BKN44 Arachis hypogaea HOM05D004221 ORTHO05D004998 1.4e-51 206.5 142 73.9
arahy.Tifrunner.gnm1.ann1.G8X8S8 Arachis hypogaea HOM05D004221 ORTHO05D004998 1.4e-51 206.5 142 73.9
arahy.Tifrunner.gnm1.ann1.VLL77W Arachis hypogaea HOM05D004221 ORTHO05D004998 1.4e-51 206.5 142 73.9
Haze_11779 Corylus avellana HOM05D004221 ORTHO05D004998 1.4e-51 206.5 171 66.1
AL6G34550 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.8e-51 206.1 140 73.6
Ca_11255_v3 Cicer arietinum L. HOM05D004221 ORTHO05D004998 1.8e-51 206.1 140 75.0
Aa31LG11G2750 Aethionema arabicum HOM05D004221 ORTHO05D004998 2.4e-51 205.7 140 73.6
ATR0618G284 Amborella trichopoda HOM05D004221 ORTHO05D004998 3.1e-51 205.3 137 76.6
Zm00001eb045320 Zea mays HOM05D004221 ORTHO05D004998 1.5e-50 203.0 138 74.6
Thhalv10005074m.g Eutrema salsugineum HOM05D004221 ORTHO05D004998 4.5e-50 201.4 139 72.7
C09p07830 Brassica napus HOM05D004221 ORTHO05D004998 7.7e-50 200.7 140 71.4
BolC9t53699H Brassica oleracea HOM05D004221 ORTHO05D004998 7.7e-50 200.7 140 71.4
BcaC04g23487 Brassica carinata HOM05D004221 ORTHO05D004998 1.0e-49 200.3 140 71.4
A06p34250 Brassica napus HOM05D004221 ORTHO05D004998 1.0e-49 200.3 140 71.4
BraA06t26357Z Brassica rapa HOM05D004221 ORTHO05D004998 1.0e-49 200.3 140 71.4
C07p44270 Brassica napus HOM05D004221 ORTHO05D004998 1.3e-49 199.9 140 70.7
BolC7t44950H Brassica oleracea HOM05D004221 ORTHO05D004998 1.7e-49 199.5 140 71.4
ClCG01G008100 Citrullus lanatus HOM05D004221 ORTHO05D004998 2.9e-49 198.7 178 61.2
A09p07020 Brassica napus HOM05D004221 ORTHO05D004998 5.0e-49 198.0 140 70.7
BraA09t36350Z Brassica rapa HOM05D004221 ORTHO05D004998 5.0e-49 198.0 140 70.7
Sp2g23860 Schrenkiella parvula HOM05D004221 ORTHO05D004998 5.0e-49 198.0 136 73.5
CDE02G2963 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 8.5e-49 197.2 135 71.9
MBI06_g27498_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 8.5e-49 197.2 137 74.5
unitig_699.g19553 Utricularia gibba HOM05D004221 ORTHO05D004998 3.2e-48 195.3 146 69.2
BcaB04g19880 Brassica carinata HOM05D004221 ORTHO05D004998 1.4e-46 189.9 150 65.3
Sabra07G0062100 Salix brachista HOM05D004221 ORTHO05D004998 1.8e-46 189.5 189 55.6
SGA_v2.0_scaffold256G45657 Striga asiatica HOM05D004221 ORTHO05D004998 5.1e-46 188.0 178 59.0
vmacro15987 Vaccinium macrocarpon HOM05D004221 ORTHO05D004998 2.0e-45 186.0 207 52.7
DCAR_023468 Daucus carota HOM05D004221 ORTHO05D004998 2.6e-45 185.7 114 82.5
Nitab4.5_0000069g0160 Nicotiana tabacum HOM05D004221 ORTHO05D004998 3.3e-45 185.3 115 80.9
Lj3A847T45 Lonicera japonica HOM05D004221 ORTHO05D004998 1.3e-44 183.3 114 78.9
CSS0001435 Camellia sinensis var. sinensis HOM05D004221 ORTHO05D004998 1.7e-44 183.0 114 78.9
Atru.chr11.1114 Acer truncatum HOM05D004221 ORTHO05D004998 3.7e-44 181.8 114 80.7
Cpa.g.sc60.76 Carica papaya HOM05D004221 ORTHO05D004998 3.7e-44 181.8 114 78.9
Duzib052G1226 Durio zibethinus HOM05D004221 ORTHO05D004998 3.7e-44 181.8 124 72.6
Dinv17642 Davidia involucrata HOM05D004221 ORTHO05D004998 6.3e-44 181.0 117 77.8
Rhsim09G0069500 Rhododendron simsii HOM05D004221 ORTHO05D004998 6.3e-44 181.0 212 50.5
CDE04G0710 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 8.2e-44 180.6 150 62.7
Cc00_g07040 Coffea canephora HOM05D004221 ORTHO05D004998 1.1e-43 180.3 113 79.6
Duzib132G0203 Durio zibethinus HOM05D004221 ORTHO05D004998 1.4e-43 179.9 114 78.1
Mapoly0041s0007 Marchantia polymorpha HOM05D004221 ORTHO05D004998 1.7e-41 172.9 139 61.9
TAR371G0536 Trochodendron aralioides HOM05D004221 ORTHO05D004998 1.7e-41 172.9 134 67.9
SEGI_18337 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 3.8e-41 171.8 139 61.2
Peaxi162Scf00021g02223 Petunia axillaris HOM05D004221 ORTHO05D004998 5.0e-41 171.4 139 66.2
SMO114G0084 Selaginella moellendorffii HOM05D004221 ORTHO05D004998 5.0e-41 171.4 136 60.3
Sabra05G0074200 Salix brachista HOM05D004221 ORTHO05D004998 6.5e-41 171.0 226 46.5
SalBow2G0865 Salvia bowleyana HOM05D004221 ORTHO05D004998 1.9e-40 169.5 114 73.7
Pp3c1_32320 Physcomitrium patens HOM05D004221 ORTHO05D004998 1.2e-39 166.8 135 62.2
AagrBONN_evm.TU.Sc2ySwM_117.4013 Anthoceros agrestis HOM05D004221 ORTHO05D004998 1.6e-39 166.4 141 57.4
AL2G24680 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 5.2e-38 161.4 108 73.1
AL8G16830 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 5.2e-38 161.4 108 73.1
SGA_v2.0_scaffold358G49836 Striga asiatica HOM05D004221 ORTHO05D004998 2.9e-33 145.6 150 54.7
Ah.01g012690 Amaranthus hybridus HOM05D004221 ORTHO05D004998 5.0e-33 144.8 87 85.1
Oeu013195.1 Olea europaea HOM05D004221 ORTHO05D004998 3.6e-31 138.7 87 80.5
AUR62032946 Chenopodium quinoa HOM05D004221 ORTHO05D004998 2.3e-30 136.0 87 79.3
Oeu041209.1 Olea europaea HOM05D004221 ORTHO05D004998 1.1e-27 127.1 87 78.2
Lj9A327T34 Lonicera japonica HOM05D004221 ORTHO05D004998 1.8e-27 126.3 136 53.7
RcHm_v2.0_Chr5g0067401 Rosa chinensis HOM05D004221 ORTHO05D004998 9.1e-27 124.0 70 94.3
RcHm_v2.0_Chr6g0266371 Rosa chinensis HOM05D004221 ORTHO05D004998 9.1e-27 124.0 70 94.3
SHI21211 Sapria himalayana HOM05D004221 ORTHO05D004998 4.5e-26 121.7 200 39.5
RcHm_v2.0_Chr3g0478071 Rosa chinensis HOM05D004221 ORTHO05D004998 5.9e-26 121.3 70 91.4
CBR_g19844 Chara braunii HOM05D002142 ORTHO05D001189 1.3e-25 120.2 137 46.0
SEGI_37490 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 2.2e-25 119.4 82 65.9
MELO3C000273.2 Cucumis melo HOM05D004221 ORTHO05D004998 4.2e-24 115.2 70 80.0
MCO07G569 Micromonas commoda HOM05D004221 ORTHO05D004998 8.0e-23 110.9 136 41.2
RcHm_v2.0_Chr6g0274601 Rosa chinensis HOM05D004221 ORTHO05D004998 1.4e-22 110.2 64 92.2
A02p41030 Brassica napus HOM05D004221 ORTHO05D004998 7.5e-21 104.4 77 63.6
MELO3C033736.2 Cucumis melo HOM05D004221 ORTHO05D004998 1.3e-20 103.6 64 79.7
Gorai.002G209700 Gossypium raimondii HOM05D004221 ORTHO05D004998 9.5e-16 87.4 59 67.8
Gohir.D01G168833 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.2e-15 87.0 65 63.1
PRCOL_00006790 Prasinoderma coloniale HOM05D004221 ORTHO05D004998 4.7e-15 85.1 138 34.1
Gohir.A01G178033 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.8e-14 83.2 67 59.7
MBI19_g48155_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 9.8e-13 77.4 60 68.3
Oeu013194.1 Olea europaea HOM05D004221 ORTHO05D004998 1.7e-12 76.6 49 71.4
Cre12.g523150 Chlamydomonas reinhardtii HOM05D004221 ORTHO05D004998 3.7e-12 75.5 133 30.1
MBI19_g31737_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 6.3e-12 74.7 60 66.7
Sed0018067 Sechium edule HOM05D004221 ORTHO05D004998 3.1e-11 72.4 53 67.9
AL1G29290 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 3.8e-09 65.5 48 68.8
AL8G24780 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 3.8e-09 65.5 48 68.8
SalBow3G1738 Salvia bowleyana HOM05D004221 ORTHO05D004998 9.5e-08 60.8 53 52.8
FAN03G3288 Fragaria x ananassa HOM05D004221 ORTHO05D205401 1.2e-07 60.5 189 33.9
SalBow6G4331 Salvia bowleyana HOM05D004221 ORTHO05D004998 4.7e-07 58.5 52 59.6


User provided reference genes

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