Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_4g28190 Fragaria vesca HOM05D005816 ORTHO05D006915 2.3e-66 255.4 125 100.0
FAN12G1213 Fragaria x ananassa HOM05D005816 ORTHO05D006915 2.3e-66 255.4 125 100.0
FAN17G1568 Fragaria x ananassa HOM05D005816 ORTHO05D006915 7.4e-65 250.4 125 97.6
FAN07G2890 Fragaria x ananassa HOM05D005816 ORTHO05D006915 1.7e-64 249.2 125 96.8
RcHm_v2.0_Chr4g0435951 Rosa chinensis HOM05D005816 ORTHO05D006915 3.1e-55 218.4 129 85.3
Prupe.1G304500 Prunus persica HOM05D005816 ORTHO05D006915 3.2e-23 112.1 140 56.4
Nn3g17700 Nelumbo nucifera HOM05D005816 ORTHO05D006915 4.4e-17 91.7 127 46.5
Glyma.10G205100 Glycine max HOM05D005816 ORTHO05D006915 1.1e-15 87.0 123 49.6
Manes.14G096700 Manihot esculenta HOM05D005816 ORTHO05D006915 1.4e-15 86.7 125 48.8
Glyma.20G185400 Glycine max HOM05D005816 ORTHO05D006915 2.4e-15 85.9 130 47.7
VMungo0720G2795 Vigna mungo HOM05D005816 ORTHO05D006915 2.4e-15 85.9 123 46.3
Lalb_Chr21g0313371 Lupinus albus HOM05D005816 ORTHO05D006915 4.1e-15 85.1 124 50.0
Phvul.007G101800 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 5.4e-15 84.7 123 43.9
Carub.0002s1536 Capsella rubella HOM05D005816 ORTHO05D006915 7.0e-15 84.3 121 43.8
QL01p001040 Quercus lobata HOM05D005816 ORTHO05D006915 1.6e-14 83.2 117 47.0
Ciclev10033717m.g Citrus clementina HOM05D005816 ORTHO05D006915 2.7e-14 82.4 130 49.2
Thecc.03G027700 Theobroma cacao HOM05D005816 ORTHO05D006915 6.0e-14 81.3 113 47.8
CiPaw.15G002700 Carya illinoinensis HOM05D005816 ORTHO05D006915 7.8e-14 80.9 137 43.1
Thhalv10019343m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 1.0e-13 80.5 115 43.5
Aa31sc79G90 Aethionema arabicum HOM05D005816 ORTHO05D006915 1.3e-13 80.1 126 47.6
Migut.E00293 Erythranthe guttata HOM05D005816 ORTHO05D006915 1.3e-13 80.1 89 48.3
Manes.06G073000 Manihot esculenta HOM05D005816 ORTHO05D006915 2.3e-13 79.3 130 46.2
Sabra08G0087500 Salix brachista HOM05D005816 ORTHO05D006915 2.3e-13 79.3 115 46.1
Potri.008G115600 Populus trichocarpa HOM05D005816 ORTHO05D006915 3.0e-13 79.0 112 47.3
TAR629G1032 Trochodendron aralioides HOM05D005816 ORTHO05D006915 3.0e-13 79.0 124 47.6
COL.COLO4_22708 Corchorus olitorius HOM05D005816 ORTHO05D006915 3.9e-13 78.6 128 43.0
Eucgr.G02356 Eucalyptus grandis HOM05D005816 ORTHO05D006915 3.9e-13 78.6 63 60.3
Atru.chr9.746 Acer truncatum HOM05D005816 ORTHO05D006915 5.1e-13 78.2 85 55.3
AL2G27750 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 5.1e-13 78.2 115 42.6
Cc11_g10680 Coffea canephora HOM05D005816 ORTHO05D006915 5.1e-13 78.2 116 50.0
Oeu024099.1 Olea europaea HOM05D005816 ORTHO05D006915 5.1e-13 78.2 106 49.1
Oeu044626.1 Olea europaea HOM05D005816 ORTHO05D006915 6.6e-13 77.8 123 41.5
SalBow8G0077 Salvia bowleyana HOM05D005816 ORTHO05D006915 6.6e-13 77.8 126 45.2
BcaB05g24412 Brassica carinata HOM05D005816 ORTHO05D006915 1.5e-12 76.6 118 44.1
CiPaw.16G002600 Carya illinoinensis HOM05D005816 ORTHO05D006915 1.9e-12 76.3 112 43.8
Thecc.02G362100 Theobroma cacao HOM05D005816 ORTHO05D006915 1.9e-12 76.3 111 47.7
CARHR061620 Cardamine hirsuta HOM05D005816 ORTHO05D006915 2.5e-12 75.9 111 44.1
Duzib205G0672 Durio zibethinus HOM05D005816 ORTHO05D006915 2.5e-12 75.9 108 48.1
BcaB03g15849 Brassica carinata HOM05D005816 ORTHO05D006915 4.3e-12 75.1 114 43.0
Gohir.A07G038800 Gossypium hirsutum HOM05D005816 ORTHO05D006915 4.3e-12 75.1 113 46.0
BcaC08g46328 Brassica carinata HOM05D005816 ORTHO05D006915 7.3e-12 74.3 114 43.9
BolC6t39316H Brassica oleracea HOM05D005816 ORTHO05D006915 7.3e-12 74.3 114 43.9
Duzib248G0754 Durio zibethinus HOM05D005816 ORTHO05D006915 9.5e-12 73.9 111 46.8
TPR.G9813 Trifolium pratense HOM05D005816 ORTHO05D006915 9.5e-12 73.9 114 41.2
BcaC03g14990 Brassica carinata HOM05D005816 ORTHO05D006915 1.2e-11 73.6 115 40.0
Hma1.2p1_0862F.1_g229870 Hydrangea macrophylla HOM05D005816 ORTHO05D006915 1.2e-11 73.6 111 45.0
Atru.chr11.1371 Acer truncatum HOM05D005816 ORTHO05D006915 2.1e-11 72.8 116 43.1
Lj4g0025770 Lotus japonicus HOM05D005816 ORTHO05D006915 3.6e-11 72.0 112 42.9
PGR119G1376 Punica granatum HOM05D005816 ORTHO05D006915 3.6e-11 72.0 118 44.9
Gohir.D11G006300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 4.7e-11 71.6 117 41.0
Lalb_Chr10g0099661 Lupinus albus HOM05D005816 ORTHO05D006915 6.2e-11 71.2 123 40.7
Dinv36900 Davidia involucrata HOM05D005816 ORTHO05D006915 8.1e-11 70.9 85 48.2
Manes.05G118800 Manihot esculenta HOM05D005816 ORTHO05D006915 8.1e-11 70.9 108 42.6
Medtr8g076990 Medicago truncatula HOM05D005816 ORTHO05D006915 8.1e-11 70.9 72 51.4
CSS0007623 Camellia sinensis var. sinensis HOM05D005816 ORTHO05D006915 1.4e-10 70.1 109 46.8
COL.COLO4_07860 Corchorus olitorius HOM05D005816 ORTHO05D006915 1.4e-10 70.1 116 39.7
Medtr1g093800 Medicago truncatula HOM05D005816 ORTHO05D006915 1.4e-10 70.1 110 49.1
ClCG01G005730 Citrullus lanatus HOM05D005816 ORTHO05D006915 1.8e-10 69.7 66 56.1
Sed0000064 Sechium edule HOM05D005816 ORTHO05D006915 2.3e-10 69.3 63 58.7
BcaC08g46825 Brassica carinata HOM05D005816 ORTHO05D006915 3.1e-10 68.9 60 55.0
Duzib251G0462 Durio zibethinus HOM05D005816 ORTHO05D006915 3.1e-10 68.9 111 45.0
Oeu041876.1 Olea europaea HOM05D005816 ORTHO05D006915 3.1e-10 68.9 127 39.4
Potri.010G130400 Populus trichocarpa HOM05D005816 ORTHO05D006915 3.1e-10 68.9 124 45.2
CiPaw.15G126000 Carya illinoinensis HOM05D005816 ORTHO05D006915 4.0e-10 68.6 130 43.1
Gohir.A11G007200 Gossypium hirsutum HOM05D005816 ORTHO05D006915 4.0e-10 68.6 117 40.2
THA.LOC104821965 Tarenaya hassleriana HOM05D005816 ORTHO05D006915 4.0e-10 68.6 117 42.7
AT1G68795 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 5.2e-10 68.2 113 38.9
Gorai.007G007600 Gossypium raimondii HOM05D005816 ORTHO05D006915 5.2e-10 68.2 111 39.6
Sopen03g038660 Solanum pennellii HOM05D005816 ORTHO05D006915 5.2e-10 68.2 64 56.2
Aqoxy3G03898 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 8.9e-10 67.4 103 40.8
Gohir.D07G042900 Gossypium hirsutum HOM05D005816 ORTHO05D006915 8.9e-10 67.4 113 44.2
Gohir.D13G069300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 8.9e-10 67.4 115 40.0
Gorai.001G045900 Gossypium raimondii HOM05D005816 ORTHO05D006915 8.9e-10 67.4 113 44.2
Lsat_1_v5_gn_4_19200 Lactuca sativa HOM05D005816 ORTHO05D006915 8.9e-10 67.4 114 44.7
MELO3C005357.2 Cucumis melo HOM05D005816 ORTHO05D006915 1.2e-09 67.0 111 39.6
Sp5g23900 Schrenkiella parvula HOM05D005816 ORTHO05D006915 1.5e-09 66.6 78 51.3
Gorai.013G079400 Gossypium raimondii HOM05D005816 ORTHO05D006915 2.0e-09 66.2 114 40.4
Lsat_1_v5_gn_3_58221 Lactuca sativa HOM05D005816 ORTHO05D006915 2.0e-09 66.2 113 45.1
BolC6t39843H Brassica oleracea HOM05D005816 ORTHO05D006915 2.6e-09 65.9 60 58.3
Aqoxy3G00384 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 3.4e-09 65.5 100 42.0
Lsat_1_v5_gn_4_112260 Lactuca sativa HOM05D005816 ORTHO05D006915 3.4e-09 65.5 86 50.0
MD06G1210600 Malus domestica HOM05D005816 ORTHO05D006915 3.4e-09 65.5 121 41.3
Sed0012991 Sechium edule HOM05D005816 ORTHO05D006915 3.4e-09 65.5 75 49.3
PGSC0003DMG400005703 Solanum tuberosum HOM05D005816 ORTHO05D006915 4.4e-09 65.1 64 51.6
Gohir.A13G071300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 5.8e-09 64.7 116 38.8
TPR.G26768 Trifolium pratense HOM05D005816 ORTHO05D006915 5.8e-09 64.7 122 38.5
HanXRQChr16g0502081 Helianthus annuus HOM05D005816 ORTHO05D006915 7.5e-09 64.3 86 45.3
Gohir.D02G116175 Gossypium hirsutum HOM05D005816 ORTHO05D006915 9.9e-09 63.9 110 40.0
Solyc05g009915.1 Solanum lycopersicum HOM05D005816 ORTHO05D006915 9.9e-09 63.9 114 43.0
Cpa.g.sc13.61 Carica papaya HOM05D005816 ORTHO05D006915 1.3e-08 63.5 60 56.7
Prupe.5G216700 Prunus persica HOM05D005816 ORTHO05D006915 1.3e-08 63.5 117 36.8
Migut.L01100 Erythranthe guttata HOM05D005816 ORTHO05D006915 1.7e-08 63.2 108 39.8
HanXRQChr05g0149681 Helianthus annuus HOM05D005816 ORTHO05D006915 1.7e-08 63.2 112 45.5
HanXRQChr16g0528861 Helianthus annuus HOM05D005816 ORTHO05D006915 1.7e-08 63.2 112 44.6
Phvul.003G177600 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 1.7e-08 63.2 122 42.6
MD14G1221300 Malus domestica HOM05D005816 ORTHO05D006915 2.2e-08 62.8 119 41.2
Manes.01G021100 Manihot esculenta HOM05D005816 ORTHO05D006915 2.9e-08 62.4 65 50.8
Potri.012G059600 Populus trichocarpa HOM05D005816 ORTHO05D006915 2.9e-08 62.4 123 39.0
C06p48080 Brassica napus HOM05D005816 ORTHO05D006915 8.3e-08 60.8 60 51.7
Lalb_Chr07g0178581 Lupinus albus HOM05D005816 ORTHO05D006915 1.1e-07 60.5 68 50.0
Nn4g23710 Nelumbo nucifera HOM05D005816 ORTHO05D006915 1.1e-07 60.5 131 35.1
PGR044G2006 Punica granatum HOM05D005816 ORTHO05D006915 1.1e-07 60.5 114 40.4
AT1G73965 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 1.4e-07 60.1 63 54.0
Carub.0002s2074 Capsella rubella HOM05D005816 ORTHO05D006915 1.4e-07 60.1 62 53.2
Eucgr.B00694 Eucalyptus grandis HOM05D005816 ORTHO05D006915 1.9e-07 59.7 120 37.5
Glyma.17G121800 Glycine max HOM05D005816 ORTHO05D006915 1.9e-07 59.7 124 36.3
CARHR067080 Cardamine hirsuta HOM05D005816 ORTHO05D006915 2.4e-07 59.3 63 55.6
Gohir.A03G097050 Gossypium hirsutum HOM05D005816 ORTHO05D006915 2.4e-07 59.3 111 39.6
Sc11g0003040 Simmondsia chinensis HOM05D005816 ORTHO05D006915 2.4e-07 59.3 68 55.9
Sopen05g005720 Solanum pennellii HOM05D005816 ORTHO05D006915 2.4e-07 59.3 83 49.4
PGSC0003DMG400000830 Solanum tuberosum HOM05D005816 ORTHO05D006915 5.4e-07 58.2 114 39.5
CiPaw.16G083700 Carya illinoinensis HOM05D005816 ORTHO05D006915 7.1e-07 57.8 118 41.5
Psat4g043720 Pisum sativum HOM05D005816 ORTHO05D006915 9.2e-07 57.4 123 35.0
AL2G33800 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 1.2e-06 57.0 63 54.0
A07p39820 Brassica napus HOM05D005816 ORTHO05D006915 1.2e-06 57.0 106 38.7
BraA07t31528Z Brassica rapa HOM05D005816 ORTHO05D006915 1.2e-06 57.0 106 38.7
Sp5g29165 Schrenkiella parvula HOM05D005816 ORTHO05D006915 1.2e-06 57.0 113 37.2
Lalb_Chr13g0302361 Lupinus albus HOM05D005816 ORTHO05D006915 1.6e-06 56.6 62 50.0
VMungo1215G1388 Vigna mungo HOM05D005816 ORTHO05D006915 1.6e-06 56.6 110 35.5
FvH4_5g12751 Fragaria vesca HOM05D005816 ORTHO05D006915 2.7e-06 55.8 122 40.2
Aa31LG4G4260 Aethionema arabicum HOM05D005816 ORTHO05D006915 3.5e-06 55.5 61 50.8
Thhalv10019753m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 6.0e-06 54.7 112 40.2


User provided reference genes

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