Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G1161 Fragaria x ananassa HOM05D007225 ORTHO05D009062 2.0e-175 619.0 321 100.0
FvH4_4g13030 Fragaria vesca HOM05D007225 ORTHO05D009062 9.3e-128 460.7 245 98.4
FAN07G2982 Fragaria x ananassa HOM05D007225 ORTHO05D009062 9.6e-117 424.1 245 90.2
RcHm_v2.0_Chr4g0412751 Rosa chinensis HOM05D007225 ORTHO05D009062 4.5e-114 415.2 245 88.2
Prupe.4G273000 Prunus persica HOM05D007225 ORTHO05D009062 9.1e-91 337.8 253 70.0
Atru.chr4.938 Acer truncatum HOM05D007225 ORTHO05D009062 7.2e-80 301.6 253 63.2
MD17G1201700 Malus domestica HOM05D007225 ORTHO05D009062 8.0e-79 298.1 253 64.4
CiPaw.04G081200 Carya illinoinensis HOM05D007225 ORTHO05D009062 1.1e-75 287.7 255 60.8
Dinv24394 Davidia involucrata HOM05D007225 ORTHO05D009062 6.5e-73 278.5 252 59.9
QL10p043051 Quercus lobata HOM05D007225 ORTHO05D009062 1.1e-72 277.7 295 54.6
CANSAT01G2273 Cannabis sativa HOM05D007225 ORTHO05D009062 1.5e-72 277.3 246 63.0
Ciclev10002244m.g Citrus clementina HOM05D007225 ORTHO05D009062 1.4e-70 270.8 246 60.6
Eucgr.I00189 Eucalyptus grandis HOM05D007225 ORTHO05D009062 2.6e-69 266.5 238 59.7
Potri.005G064800 Populus trichocarpa HOM05D007225 ORTHO05D009062 1.3e-68 264.2 251 59.0
Psat7g045080 Pisum sativum HOM05D007225 ORTHO05D009062 1.7e-68 263.8 243 59.3
COL.COLO4_35773 Corchorus olitorius HOM05D007225 ORTHO05D009062 2.2e-68 263.5 249 57.4
Potri.005G064951 Populus trichocarpa HOM05D007225 ORTHO05D009062 2.8e-68 263.1 251 58.6
Ca_17629_v3 Cicer arietinum L. HOM05D007225 ORTHO05D009062 3.7e-68 262.7 243 59.3
TPR.G37342 Trifolium pratense HOM05D007225 ORTHO05D009062 6.3e-68 261.9 243 59.3
Hma1.2p1_0539F.1_g174530 Hydrangea macrophylla HOM05D007225 ORTHO05D009062 1.1e-67 261.2 257 57.2
Sabra05G0053800 Salix brachista HOM05D007225 ORTHO05D009062 2.9e-65 253.1 251 56.2
Gorai.011G119000 Gossypium raimondii HOM05D007225 ORTHO05D009062 3.8e-65 252.7 245 55.5
Thecc.01G134800 Theobroma cacao HOM05D007225 ORTHO05D009062 3.8e-65 252.7 242 55.4
Gohir.D10G108600 Gossypium hirsutum HOM05D007225 ORTHO05D009062 1.6e-63 247.3 244 54.5
Lalb_Chr13g0296631 Lupinus albus HOM05D007225 ORTHO05D009062 1.6e-63 247.3 241 56.8
Lj4g0008022 Lotus japonicus HOM05D007225 ORTHO05D009062 1.8e-62 243.8 236 55.5
TAR625G0602 Trochodendron aralioides HOM05D007225 ORTHO05D009062 6.8e-62 241.9 254 54.3
Cpa.g.sc42.174 Carica papaya HOM05D007225 ORTHO05D009062 4.4e-61 239.2 250 52.8
CSS0045766 Camellia sinensis var. sinensis HOM05D007225 ORTHO05D009062 1.1e-59 234.6 252 51.6
Cc07_g18810 Coffea canephora HOM05D007225 ORTHO05D009062 2.4e-59 233.4 257 52.5
CsaV3_2G019450 Cucumis sativus L. HOM05D007225 ORTHO05D009062 2.4e-59 233.4 237 53.6
PGSC0003DMG400012541 Solanum tuberosum HOM05D007225 ORTHO05D009062 9.2e-59 231.5 253 51.4
vmacro12787 Vaccinium macrocarpon HOM05D007225 ORTHO05D009062 9.2e-59 231.5 251 51.8
Sc07g0001760 Simmondsia chinensis HOM05D007225 ORTHO05D009062 2.7e-58 229.9 246 52.0
Solyc01g105570.4 Solanum lycopersicum HOM05D007225 ORTHO05D009062 1.0e-57 228.0 250 50.8
Oeu058297.1 Olea europaea HOM05D007225 ORTHO05D009062 1.3e-57 227.6 240 50.0
Sopen01g048040 Solanum pennellii HOM05D007225 ORTHO05D009062 2.9e-57 226.5 250 50.4
TAR381G0670 Trochodendron aralioides HOM05D007225 ORTHO05D009062 1.9e-56 223.8 273 47.3
Sed0013127 Sechium edule HOM05D007225 ORTHO05D009062 7.3e-56 221.9 236 52.1
PGR119G1418 Punica granatum HOM05D007225 ORTHO05D009062 3.6e-55 219.5 237 52.3
MSTRG.23466 Avicennia marina HOM05D007225 ORTHO05D009062 6.8e-54 215.3 247 48.6
Hund04436 Selenicereus undatus HOM05D007225 ORTHO05D009062 6.8e-54 215.3 254 48.8
ClCG02G000390 Citrullus lanatus HOM05D007225 ORTHO05D009062 9.8e-53 211.5 251 49.0
Aqoxy5G02304 Aquilegia oxysepala HOM05D007225 ORTHO05D009062 1.3e-52 211.1 268 48.1
Nitab4.5_0000386g0080 Nicotiana tabacum HOM05D007225 ORTHO05D009062 2.9e-52 209.9 249 48.2
MBI06_g27455_MAGBIO Magnolia biondii HOM05D007225 ORTHO05D009062 4.9e-52 209.1 253 46.6
Duzib187G1928 Durio zibethinus HOM05D007225 ORTHO05D009062 1.4e-51 207.6 249 47.4
Migut.H00686 Erythranthe guttata HOM05D007225 ORTHO05D009062 7.0e-51 205.3 247 46.6
PSO528G0250 Papaver somniferum HOM05D007225 ORTHO05D009062 2.0e-50 203.8 263 45.6
Glyma.05G192800 Glycine max HOM05D007225 ORTHO05D009062 4.6e-50 202.6 244 50.4
PSO170G5625 Papaver somniferum HOM05D007225 ORTHO05D009062 1.3e-49 201.1 263 44.5
AUR62003589 Chenopodium quinoa HOM05D007225 ORTHO05D009062 1.7e-49 200.7 270 44.4
AUR62017902 Chenopodium quinoa HOM05D007225 ORTHO05D009062 1.5e-48 197.6 270 42.6
AUR62043562 Chenopodium quinoa HOM05D007225 ORTHO05D009062 1.5e-48 197.6 270 42.6
Phvul.002G273400 Phaseolus vulgaris HOM05D007225 ORTHO05D009062 1.5e-48 197.6 240 51.7
Gohir.A10G156900 Gossypium hirsutum HOM05D007225 ORTHO05D009062 1.2e-47 194.5 169 58.0
Lsat_1_v5_gn_5_68521 Lactuca sativa HOM05D007225 ORTHO05D009062 1.2e-47 194.5 234 50.0
ECA233G3017 Erigeron canadensis HOM05D007225 ORTHO05D000131 8.0e-47 191.8 220 50.9
Manes.12G157300 Manihot esculenta HOM05D007225 ORTHO05D009062 1.8e-46 190.7 217 51.2
Medtr8g093850 Medicago truncatula HOM05D007225 ORTHO05D009062 2.3e-46 190.3 166 59.0
Rhsim10G0132500 Rhododendron simsii HOM05D007225 ORTHO05D009062 2.3e-46 190.3 370 36.2
AT5G64010 Arabidopsis thaliana HOM05D007225 ORTHO05D009062 4.0e-46 189.5 239 43.5
EL10Ac1g01390 Beta vulgaris HOM05D007225 ORTHO05D009062 6.8e-46 188.7 310 41.0
Sp2g27080 Schrenkiella parvula HOM05D007225 ORTHO05D009062 2.6e-45 186.8 239 45.2
AL8G41270 Arabidopsis lyrata HOM05D007225 ORTHO05D009062 4.4e-45 186.0 239 43.1
A06p30630 Brassica napus HOM05D007225 ORTHO05D009062 9.8e-45 184.9 237 45.1
BraA06t26013Z Brassica rapa HOM05D007225 ORTHO05D009062 2.2e-44 183.7 237 45.1
DCAR_010250 Daucus carota HOM05D007225 ORTHO05D009062 4.9e-44 182.6 246 43.1
C03p62330 Brassica napus HOM05D007225 ORTHO05D009062 1.4e-43 181.0 239 42.3
BcaC01g02654 Brassica carinata HOM05D007225 ORTHO05D009062 3.2e-43 179.9 239 41.8
BolC3t18495H Brassica oleracea HOM05D007225 ORTHO05D009062 3.2e-43 179.9 239 41.8
Thhalv10004850m.g Eutrema salsugineum HOM05D007225 ORTHO05D009062 7.1e-43 178.7 239 44.4
CARHR277930 Cardamine hirsuta HOM05D007225 ORTHO05D002208 3.5e-42 176.4 239 43.1
VMungo0251G1761 Vigna mungo HOM05D007225 ORTHO05D009062 1.0e-41 174.9 223 50.2
GSVIVG01022343001 Vitis vinifera HOM05D007225 ORTHO05D009062 1.0e-41 174.9 157 58.6
Carub.0008s2479 Capsella rubella HOM05D007225 ORTHO05D009062 3.9e-41 172.9 240 43.3
RcHm_v2.0_Chr4g0412711 Rosa chinensis HOM05D007225 ORTHO05D009062 5.1e-41 172.6 114 81.6
Nn5g28498 Nelumbo nucifera HOM05D007225 ORTHO05D009062 8.6e-41 171.8 169 51.5
Aqoxy6G00280 Aquilegia oxysepala HOM05D007225 ORTHO05D009062 3.3e-40 169.9 256 41.8
Peaxi162Scf00172g00611 Petunia axillaris HOM05D007225 ORTHO05D009062 6.2e-39 165.6 154 54.5
THA.LOC104818429 Tarenaya hassleriana HOM05D007225 ORTHO05D009062 1.2e-37 161.4 238 42.9
Aa31LG1G17910 Aethionema arabicum HOM05D007225 ORTHO05D009062 9.9e-37 158.3 255 40.4
arahy.Tifrunner.gnm1.ann1.ST1FFJ Arachis hypogaea HOM05D007225 ORTHO05D009062 5.4e-35 152.5 229 43.2
HPP92_025180 Vanilla planifolia HOM05D007225 ORTHO05D009062 5.4e-35 152.5 268 34.7
HanXRQChr12g0380581 Helianthus annuus HOM05D007225 ORTHO05D009062 1.2e-34 151.4 184 48.4
DCAR_014328 Daucus carota HOM05D007225 ORTHO05D009062 2.1e-34 150.6 243 40.3
Nn1g06303 Nelumbo nucifera HOM05D007225 ORTHO05D009062 2.7e-34 150.2 253 38.7
Haze_25275 Corylus avellana HOM05D007225 ORTHO05D009062 7.8e-34 148.7 105 65.7
MELO3C023228.2 Cucumis melo HOM05D007225 ORTHO05D009062 7.8e-34 148.7 158 53.8
AagrBONN_evm.TU.Sc2ySwM_368.986 Anthoceros agrestis HOM05D007225 ORTHO05D009062 4.3e-32 142.9 234 37.2
ATR0709G077 Amborella trichopoda HOM05D007225 ORTHO05D009062 3.6e-31 139.8 227 37.4
Mapoly0095s0053 Marchantia polymorpha HOM05D007225 ORTHO05D009062 7.6e-29 132.1 273 34.8
Glyma.08G000900 Glycine max HOM05D007225 ORTHO05D009062 2.2e-28 130.6 239 40.2
Pp3c8_18500 Physcomitrium patens HOM05D007225 ORTHO05D009062 2.2e-28 130.6 192 42.2
Os04g0693250 Oryza sativa ssp. japonica HOM05D007225 ORTHO05D009062 4.9e-28 129.4 253 35.6
SGA_v2.0_scaffold20G09018 Striga asiatica HOM05D007225 ORTHO05D009062 6.4e-28 129.0 164 46.3
unitig_699.g19729 Utricularia gibba HOM05D007225 ORTHO05D009062 3.2e-27 126.7 254 35.4
Ah.02g121670 Amaranthus hybridus HOM05D007225 ORTHO05D009062 7.1e-27 125.6 145 45.5
Nitab4.5_0008206g0020 Nicotiana tabacum HOM05D007225 ORTHO05D009062 3.6e-23 113.2 156 46.8
Nitab4.5_0010123g0010 Nicotiana tabacum HOM05D007225 ORTHO05D009062 3.1e-22 110.2 157 46.5
AagrBONN_evm.TU.Sc2ySwM_117.1984 Anthoceros agrestis HOM05D007225 ORTHO05D009062 1.2e-21 108.2 230 33.9
SHI11479 Sapria himalayana HOM05D000043 ORTHO05D002577 1.5e-21 107.8 94 52.1
SMO146G0397 Selaginella moellendorffii HOM05D007225 ORTHO05D009062 4.4e-21 106.3 261 30.7
Carub.0003s2889 Capsella rubella HOM05D007225 ORTHO05D009062 3.0e-17 93.6 83 53.0
GSVIVG01022344001 Vitis vinifera HOM05D007225 ORTHO05D009062 2.6e-13 80.5 100 48.0
arahy.Tifrunner.gnm1.ann1.LBHD5T Arachis hypogaea HOM05D007225 ORTHO05D009062 2.7e-10 70.5 147 36.7
Os04g0693200 Oryza sativa ssp. japonica HOM05D007225 ORTHO05D009062 5.6e-08 62.8 86 36.0
SEGI_25786 Sequoiadendron giganteum HOM05D021798 ORTHO05D009062 5.6e-08 62.8 126 29.4
Zm00001eb434540 Zea mays HOM05D007225 ORTHO05D009062 2.1e-07 60.8 81 40.7
CBR_g23098 Chara braunii HOM05D007225 ORTHO05D009062 6.2e-07 59.3 194 24.7


User provided reference genes

Program Settings