Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G0989 Fragaria x ananassa HOM05D006250 ORTHO05D007107 1.3e-153 547.4 569 100.0
FAN22G2376 Fragaria x ananassa HOM05D006250 ORTHO05D007107 5.6e-136 488.8 598 91.6
FAN17G0914 Fragaria x ananassa HOM05D006250 ORTHO05D007107 2.0e-133 480.3 609 90.1
FvH4_4g35070 Fragaria vesca HOM05D006250 ORTHO05D007107 2.1e-130 470.3 604 90.2
FAN07G1033 Fragaria x ananassa HOM05D006250 ORTHO05D007107 2.7e-114 416.8 249 89.6
RcHm_v2.0_Chr4g0444691 Rosa chinensis HOM05D006250 ORTHO05D007107 1.8e-113 414.1 604 85.6
MD13G1086400 Malus domestica HOM05D006250 ORTHO05D007107 4.8e-87 326.2 610 78.5
Prupe.1G260300 Prunus persica HOM05D006250 ORTHO05D007107 3.1e-86 323.6 241 74.7
MD16G1085800 Malus domestica HOM05D006250 ORTHO05D007107 7.2e-83 312.4 231 75.3
Haze_12133 Corylus avellana HOM05D006250 ORTHO05D007107 5.4e-78 296.2 622 73.3
Dinv31115 Davidia involucrata HOM05D006250 ORTHO05D007107 2.2e-71 274.2 622 72.8
COL.COLO4_19523 Corchorus olitorius HOM05D006250 ORTHO05D007107 2.9e-71 273.9 610 73.4
Ciclev10031015m.g Citrus clementina HOM05D006250 ORTHO05D007107 3.2e-70 270.4 615 74.1
GSVIVG01020179001 Vitis vinifera HOM05D006250 ORTHO05D007107 5.4e-70 269.6 608 73.8
Migut.L01451 Erythranthe guttata HOM05D006250 ORTHO05D007107 5.0e-68 263.1 624 71.3
Eucgr.B03367 Eucalyptus grandis HOM05D006250 ORTHO05D007107 5.0e-68 263.1 620 72.9
Sopen05g002190 Solanum pennellii HOM05D000912 ORTHO05D001232 2.5e-67 260.8 617 71.6
PGSC0003DMG400015603 Solanum tuberosum HOM05D006250 ORTHO05D007107 2.5e-67 260.8 616 71.4
Solyc05g006170.4 Solanum lycopersicum HOM05D006250 ORTHO05D007107 3.3e-67 260.4 617 71.6
CAN.G1160.10 Capsicum annuum HOM05D006250 ORTHO05D007107 5.6e-67 259.6 611 71.7
QL03p066863 Quercus lobata HOM05D006250 ORTHO05D007107 2.3e-65 254.2 621 72.0
CiPaw.05G146100 Carya illinoinensis HOM05D006250 ORTHO05D007107 4.0e-65 253.4 626 72.2
Cc11_g14200 Coffea canephora HOM05D006250 ORTHO05D007107 4.4e-64 250.0 617 69.9
Gorai.009G344900 Gossypium raimondii HOM05D006250 ORTHO05D007107 4.4e-64 250.0 606 71.8
Thecc.02G242000 Theobroma cacao HOM05D006250 ORTHO05D007107 4.4e-64 250.0 615 71.4
Gohir.D05G321400 Gossypium hirsutum HOM05D006250 ORTHO05D007107 9.8e-64 248.8 606 71.8
Hma1.2p1_1049F.1_g251780 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 1.7e-63 248.1 613 72.1
Hma1.2p1_2649F.1_g326135 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 1.7e-63 248.1 613 72.1
Lalb_Chr09g0326521 Lupinus albus HOM05D006250 ORTHO05D007107 3.7e-63 246.9 605 69.9
Manes.05G091350 Manihot esculenta HOM05D006250 ORTHO05D007107 1.4e-62 245.0 608 70.6
arahy.Tifrunner.gnm1.ann1.ST0DQ2 Arachis hypogaea HOM05D006250 ORTHO05D007107 1.9e-62 244.6 616 67.7
arahy.Tifrunner.gnm1.ann1.11GRU6 Arachis hypogaea HOM05D006250 ORTHO05D007107 5.4e-62 243.0 616 67.7
Atru.chr11.1955 Acer truncatum HOM05D006250 ORTHO05D007107 7.0e-62 242.7 234 62.4
Phvul.002G075400 Phaseolus vulgaris HOM05D006250 ORTHO05D007107 2.7e-61 240.7 641 68.5
Potri.008G193700 Populus trichocarpa HOM05D006250 ORTHO05D007107 7.8e-61 239.2 612 71.1
TWI18G0037 Tripterygium wilfordii HOM05D006250 ORTHO05D007107 3.9e-60 236.9 616 70.0
Glyma.02G029800 Glycine max HOM05D006250 ORTHO05D007107 6.6e-60 236.1 614 70.4
TAR629G0559 Trochodendron aralioides HOM05D006250 ORTHO05D007107 1.9e-59 234.6 244 56.6
CSS0049978 Camellia sinensis var. sinensis HOM05D006250 ORTHO05D007107 3.3e-59 233.8 620 71.0
Duzib251G0023 Durio zibethinus HOM05D006250 ORTHO05D007107 5.6e-59 233.0 560 75.7
Nn3g16985 Nelumbo nucifera HOM05D006250 ORTHO05D007107 5.6e-59 233.0 586 67.6
MSTRG.625 Avicennia marina HOM05D006250 ORTHO05D007107 9.5e-59 232.3 622 68.5
Gohir.A05G319200 Gossypium hirsutum HOM05D006250 ORTHO05D007107 1.2e-58 231.9 612 70.6
CANSAT01G1928 Cannabis sativa HOM05D006250 ORTHO05D007107 4.7e-58 229.9 234 58.1
Glyma.01G036200 Glycine max HOM05D006250 ORTHO05D007107 1.8e-57 228.0 614 69.1
TPR.G13515 Trifolium pratense HOM05D006250 ORTHO05D007107 3.1e-57 227.3 558 74.6
Aa31LG2G10230 Aethionema arabicum HOM05D006250 ORTHO05D007107 5.2e-57 226.5 613 50.7
Lsat_1_v5_gn_3_49600 Lactuca sativa HOM05D006250 ORTHO05D007107 8.9e-57 225.7 232 55.2
BcaC07g38607 Brassica carinata HOM05D006250 ORTHO05D007107 7.5e-56 222.6 216 59.3
Ah.03g132320 Amaranthus hybridus HOM05D006250 ORTHO05D007107 1.7e-55 221.5 547 65.8
BolC8t49010H Brassica oleracea HOM05D006250 ORTHO05D007107 1.7e-55 221.5 229 56.3
C08p13750 Brassica napus HOM05D006250 ORTHO05D007107 2.9e-55 220.7 229 56.3
SalBow2G3220 Salvia bowleyana HOM05D006250 ORTHO05D007107 2.9e-55 220.7 538 76.0
Aqoxy3G03090 Aquilegia oxysepala HOM05D006250 ORTHO05D007107 3.7e-55 220.3 621 67.1
HanXRQChr10g0288221 Helianthus annuus HOM05D006250 ORTHO05D007107 6.4e-55 219.5 193 64.2
Thhalv10007114m.g Eutrema salsugineum HOM05D006250 ORTHO05D007107 8.3e-55 219.2 237 55.3
A08p33910 Brassica napus HOM05D006250 ORTHO05D007107 4.1e-54 216.9 237 55.3
BraA08t35306Z Brassica rapa HOM05D006250 ORTHO05D007107 4.1e-54 216.9 237 55.3
Sabra08G0147200 Salix brachista HOM05D006250 ORTHO05D007107 4.1e-54 216.9 650 55.8
VMungo1215G1343 Vigna mungo HOM05D006250 ORTHO05D007107 4.1e-54 216.9 563 73.7
TAR371G0500 Trochodendron aralioides HOM05D006250 ORTHO05D007107 5.4e-54 216.5 620 58.1
Lj2g0015976 Lotus japonicus HOM05D006250 ORTHO05D007107 3.5e-53 213.8 604 70.4
BcaC07g38569 Brassica carinata HOM05D006250 ORTHO05D007107 4.6e-53 213.4 234 56.4
Sp1g09140 Schrenkiella parvula HOM05D006250 ORTHO05D007107 4.6e-53 213.4 232 56.5
CARHR010650 Cardamine hirsuta HOM05D006250 ORTHO05D007107 6.0e-53 213.0 228 54.8
ClCG09G022110 Citrullus lanatus HOM05D006250 ORTHO05D007107 6.0e-53 213.0 263 52.5
Carub.0001s0994 Capsella rubella HOM05D006250 ORTHO05D007107 7.8e-53 212.6 231 55.4
THA.LOC104816735 Tarenaya hassleriana HOM05D006250 ORTHO05D007107 1.3e-52 211.8 234 55.6
Medtr5g035590 Medicago truncatula HOM05D006250 ORTHO05D007107 3.9e-52 210.3 239 54.8
AT1G10510 Arabidopsis thaliana HOM05D006250 ORTHO05D007107 5.1e-52 209.9 235 54.9
AL1G21310 Arabidopsis lyrata HOM05D006250 ORTHO05D007107 1.1e-51 208.8 234 54.3
BcaC05g24932 Brassica carinata HOM05D006250 ORTHO05D007107 1.5e-51 208.4 191 59.2
A06p07280 Brassica napus HOM05D006250 ORTHO05D007107 3.3e-51 207.2 229 56.3
BraA06t23934Z Brassica rapa HOM05D006250 ORTHO05D007107 3.3e-51 207.2 229 56.3
AUR62026573 Chenopodium quinoa HOM05D006250 ORTHO05D007107 1.6e-50 204.9 574 70.4
VMungo0720G1586 Vigna mungo HOM05D006250 ORTHO05D007107 2.1e-50 204.5 546 73.8
AUR62039411 Chenopodium quinoa HOM05D006250 ORTHO05D007107 2.8e-50 204.1 576 70.7
MELO3C002989.2 Cucumis melo HOM05D006250 ORTHO05D007107 1.4e-49 201.8 217 56.7
BcaC05g24872 Brassica carinata HOM05D006250 ORTHO05D007107 1.8e-49 201.4 174 64.9
MBI18_g16987_MAGBIO Magnolia biondii HOM05D006250 ORTHO05D007107 2.4e-49 201.1 550 73.6
C05p08800 Brassica napus HOM05D006250 ORTHO05D007107 3.1e-49 200.7 172 65.1
BolC5t29626H Brassica oleracea HOM05D006250 ORTHO05D007107 3.1e-49 200.7 172 65.1
Psat4g140960 Pisum sativum HOM05D006250 ORTHO05D007107 5.2e-49 199.9 241 51.0
CDE04G2141 Ceratophyllum demersum HOM05D006250 ORTHO05D007107 6.8e-49 199.5 562 71.2
Ca_18091_v3 Cicer arietinum L. HOM05D006250 ORTHO05D007107 8.9e-49 199.1 232 54.3
ECA246G3811 Erigeron canadensis HOM05D006250 ORTHO05D007107 3.4e-48 197.2 167 62.9
unitig_749.g13267 Utricularia gibba HOM05D006250 ORTHO05D007107 1.3e-47 195.3 168 61.3
CsaV3_5G025030 Cucumis sativus L. HOM05D006250 ORTHO05D007107 4.9e-47 193.4 217 54.8
PSO063G2741 Papaver somniferum HOM05D006250 ORTHO05D007107 6.4e-47 193.0 246 48.0
EL10Ac6g13760 Beta vulgaris HOM05D006250 ORTHO05D007107 1.1e-46 192.2 550 72.7
PSO832G4030 Papaver somniferum HOM05D006250 ORTHO05D007107 1.1e-46 192.2 246 47.6
Nitab4.5_0005722g0060 Nicotiana tabacum HOM05D006250 ORTHO05D007107 3.2e-46 190.7 238 51.3
SGA_v2.0_scaffold8G04258 Striga asiatica HOM05D006250 ORTHO05D007107 1.2e-45 188.7 668 64.5
Actinidia15003 Actinidia chinensis HOM05D006250 ORTHO05D007107 2.1e-45 188.0 617 65.5
Lj6A800T42 Lonicera japonica HOM05D006250 ORTHO05D007107 1.0e-44 185.7 251 49.0
DCAR_026556 Daucus carota HOM05D006250 ORTHO05D007107 3.9e-44 183.7 159 61.0
Sed0020226 Sechium edule HOM05D006250 ORTHO05D007107 8.7e-44 182.6 215 52.6
Sc11g0001380 Simmondsia chinensis HOM05D006250 ORTHO05D007107 6.2e-42 176.4 214 51.4
Hund05952 Selenicereus undatus HOM05D006250 ORTHO05D007107 5.3e-41 173.3 226 47.8
PGR102G1255 Punica granatum HOM05D006250 ORTHO05D007107 2.9e-39 167.5 119 73.1
Dinv24907 Davidia involucrata HOM05D006250 ORTHO05D007107 6.4e-39 166.4 473 80.3
Lsat_1_v5_gn_4_95161 Lactuca sativa HOM05D006250 ORTHO05D007107 4.2e-38 163.7 141 62.4
ATR0829G105 Amborella trichopoda HOM05D006250 ORTHO05D007107 2.1e-37 161.4 124 64.5
Os06g0237502 Oryza sativa ssp. japonica HOM05D006250 ORTHO05D007107 7.3e-35 152.9 551 67.2
Hma1.2p1_1049F.1_g251790 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 3.4e-32 144.1 184 50.0
Hma1.2p1_2649F.1_g326133 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 3.4e-32 144.1 184 50.0
Rhsim12G0124700 Rhododendron simsii HOM05D006250 ORTHO05D007107 9.9e-32 142.5 184 47.3
vmacro16283 Vaccinium macrocarpon HOM05D006250 ORTHO05D007107 9.9e-32 142.5 123 61.8
Zm00001eb371900 Zea mays HOM05D006250 ORTHO05D007107 2.4e-30 137.9 164 49.4
Peaxi162Scf00421g00828 Petunia axillaris HOM05D006250 ORTHO05D007107 2.7e-29 134.4 129 58.9
HPP92_017346 Vanilla planifolia HOM05D006250 ORTHO05D007107 1.1e-25 122.5 590 64.1
Nitab4.5_0000257g0160 Nicotiana tabacum HOM05D006250 ORTHO05D007107 4.0e-25 120.6 244 40.2
TAR629G0016 Trochodendron aralioides HOM05D006250 ORTHO05D007107 1.1e-19 102.4 391 67.5
SEGI_23986 Sequoiadendron giganteum HOM05D006250 ORTHO05D007107 1.2e-16 92.4 158 40.5
Lsat_1_v5_gn_4_84060 Lactuca sativa HOM05D006250 ORTHO05D007107 2.0e-16 91.7 64 68.8
vmacro16284 Vaccinium macrocarpon HOM05D006250 ORTHO05D007107 4.5e-16 90.5 179 38.5
Hma1.2p1_2649F.1_g326137 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 5.5e-14 83.6 94 51.1
AagrBONN_evm.TU.Sc2ySwM_344.3920 Anthoceros agrestis HOM05D006250 ORTHO05D007107 2.3e-12 78.2 169 36.7
DCAR_026558 Daucus carota HOM05D006250 ORTHO05D007107 2.8e-10 71.2 121 39.7
SMO116G0024 Selaginella moellendorffii HOM05D006250 ORTHO05D007107 2.4e-09 68.2 62 51.6
Mapoly0090s0039 Marchantia polymorpha HOM05D006250 ORTHO05D007107 1.0e-07 62.8 149 31.5
Pp3c14_24560 Physcomitrium patens HOM05D006250 ORTHO05D007107 1.0e-07 62.8 199 32.2
Pp3c14_24566 Physcomitrium patens HOM05D006250 ORTHO05D007107 1.0e-07 62.8 199 32.2
SEGI_34898 Sequoiadendron giganteum HOM05D006250 ORTHO05D007107 2.9e-07 61.2 89 42.7
Cpa.g.sc367.5 Carica papaya HOM05D006250 ORTHO05D007107 6.5e-07 60.1 116 43.1
RcHm_v2.0_Chr6g0258861 Rosa chinensis HOM05D046827 ORTHO05D007107 2.5e-06 58.2 39 82.1
RcHm_v2.0_Chr5g0079721 Rosa chinensis HOM05D046827 ORTHO05D007107 7.2e-06 56.6 39 79.5


User provided reference genes

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