Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G0947 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.5e-91 340.5 345 100.0
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 3.5e-56 223.0 345 81.4
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 4.6e-56 222.6 345 81.2
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 1.5e-54 217.6 347 78.1
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 1.5e-54 217.6 348 85.1
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 1.4e-52 211.1 346 79.8
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 4.9e-50 202.6 347 78.4
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 6.4e-50 202.2 362 57.2
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 1.1e-49 201.4 348 78.2
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 2.4e-49 200.3 350 77.7
FAN07G2601 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.2e-48 198.0 105 95.2
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 1.2e-48 198.0 350 76.6
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 9.6e-46 188.3 336 77.1
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 2.1e-45 187.2 345 75.9
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 2.8e-45 186.8 363 65.0
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 3.6e-45 186.4 249 85.9
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 3.6e-45 186.4 249 85.9
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 3.6e-45 186.4 336 76.8
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 3.6e-45 186.4 336 76.8
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 4.7e-45 186.0 335 76.4
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 4.7e-45 186.0 347 67.7
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 6.2e-45 185.7 340 75.9
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.1e-44 184.9 336 76.2
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.1e-44 184.9 336 76.2
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 1.4e-44 184.5 106 85.8
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 2.4e-44 183.7 325 76.6
QL03p070738 Quercus lobata HOM05D003751 ORTHO05D004765 2.4e-44 183.7 112 85.7
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 5.2e-44 182.6 345 75.1
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 5.2e-44 182.6 390 60.3
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 6.9e-44 182.2 345 74.2
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 6.9e-44 182.2 347 74.6
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 9.0e-44 181.8 341 74.5
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 9.0e-44 181.8 341 74.5
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 9.0e-44 181.8 334 75.4
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 1.5e-43 181.0 343 73.2
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 2.0e-43 180.6 347 74.6
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 3.4e-43 179.9 337 75.1
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 3.4e-43 179.9 323 76.8
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 3.4e-43 179.9 338 75.7
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 5.8e-43 179.1 337 75.1
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 5.8e-43 179.1 340 74.4
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 9.9e-43 178.3 345 73.9
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 9.9e-43 178.3 106 82.1
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 1.3e-42 177.9 325 80.9
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 1.3e-42 177.9 346 75.4
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 1.7e-42 177.6 347 77.2
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 1.7e-42 177.6 103 82.5
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 1.7e-42 177.6 343 74.1
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 1.7e-42 177.6 101 84.2
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.8e-42 176.4 333 74.8
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 4.9e-42 176.0 340 73.5
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 4.9e-42 176.0 341 74.2
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 6.4e-42 175.6 333 74.5
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 6.4e-42 175.6 327 76.1
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 8.4e-42 175.3 336 75.9
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 8.4e-42 175.3 246 85.4
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 8.4e-42 175.3 337 73.6
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 1.1e-41 174.9 346 73.4
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 1.4e-41 174.5 336 75.6
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 1.9e-41 174.1 106 80.2
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 1.9e-41 174.1 345 73.6
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.9e-41 174.1 333 74.5
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 1.9e-41 174.1 346 73.1
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 1.9e-41 174.1 340 72.6
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 2.4e-41 173.7 327 75.8
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 2.4e-41 173.7 340 72.6
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 2.4e-41 173.7 343 70.0
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 3.2e-41 173.3 347 73.2
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 7.1e-41 172.2 345 73.6
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 7.1e-41 172.2 341 73.6
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 9.3e-41 171.8 349 73.6
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 9.3e-41 171.8 349 73.6
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 9.3e-41 171.8 349 73.1
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 9.3e-41 171.8 339 74.3
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 9.3e-41 171.8 339 74.3
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 1.2e-40 171.4 248 83.5
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 1.6e-40 171.0 324 76.2
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 1.6e-40 171.0 346 73.4
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 1.6e-40 171.0 341 73.3
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 3.5e-40 169.9 346 73.1
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 3.5e-40 169.9 357 64.4
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 3.5e-40 169.9 344 72.4
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 3.5e-40 169.9 345 73.3
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 4.6e-40 169.5 345 48.7
ClCG05G023830 Citrullus lanatus HOM05D003751 ORTHO05D004765 4.6e-40 169.5 104 83.7
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 6.0e-40 169.1 339 78.2
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 6.0e-40 169.1 101 82.2
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 6.0e-40 169.1 341 71.3
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 7.8e-40 168.7 346 72.3
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 1.0e-39 168.3 335 63.6
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 1.0e-39 168.3 346 72.8
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 1.0e-39 168.3 347 72.3
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 1.0e-39 168.3 351 73.2
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 1.0e-39 168.3 336 74.1
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 1.7e-39 167.5 81 93.8
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 1.7e-39 167.5 101 81.2
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 1.7e-39 167.5 101 81.2
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 1.7e-39 167.5 327 75.8
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 2.3e-39 167.2 335 74.0
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 2.3e-39 167.2 101 81.2
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 2.3e-39 167.2 327 75.2
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 2.3e-39 167.2 99 83.8
vmacro23251 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 2.3e-39 167.2 99 83.8
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 3.0e-39 166.8 98 81.6
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 3.0e-39 166.8 314 76.8
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 3.9e-39 166.4 97 83.5
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 3.9e-39 166.4 342 74.3
Dinv38780 Davidia involucrata HOM05D003751 ORTHO05D004765 3.9e-39 166.4 101 80.2
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 3.9e-39 166.4 101 80.2
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 5.1e-39 166.0 101 81.2
MELO3C012139.2 Cucumis melo HOM05D003751 ORTHO05D004765 5.1e-39 166.0 104 81.7
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 5.1e-39 166.0 248 81.9
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 6.6e-39 165.6 101 80.2
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 6.6e-39 165.6 97 83.5
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 8.7e-39 165.2 101 80.2
DCAR_005254 Daucus carota HOM05D003751 ORTHO05D004765 8.7e-39 165.2 98 81.6
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 8.7e-39 165.2 347 72.9
Zm00001eb008460 Zea mays HOM05D003751 ORTHO05D004765 8.7e-39 165.2 95 83.2
DCAR_016919 Daucus carota HOM05D003751 ORTHO05D004765 1.5e-38 164.5 97 82.5
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 1.9e-38 164.1 98 80.6
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 1.9e-38 164.1 256 81.2
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 2.5e-38 163.7 101 78.2
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 2.5e-38 163.7 336 77.4
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 2.5e-38 163.7 93 84.9
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 4.3e-38 162.9 99 79.8
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 7.3e-38 162.2 347 72.6
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 9.6e-38 161.8 315 75.9
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 9.6e-38 161.8 339 72.3
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 1.3e-37 161.4 89 87.6
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 1.6e-37 161.0 105 78.1
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 1.6e-37 161.0 97 82.5
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 2.8e-37 160.2 337 72.7
HPP92_007743 Vanilla planifolia HOM05D003751 ORTHO05D004765 2.8e-37 160.2 101 79.2
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 3.6e-37 159.8 95 84.2
CDE04G0854 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 4.8e-37 159.5 105 76.2
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 4.8e-37 159.5 105 75.2
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 6.2e-37 159.1 349 75.4
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 1.4e-36 157.9 92 84.8
Os03g0211900 Oryza sativa ssp. japonica HOM05D003751 ORTHO05D004765 1.4e-36 157.9 95 82.1
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 5.3e-36 156.0 250 64.8
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.4e-35 153.3 92 79.3
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 3.4e-35 153.3 92 79.3
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 7.6e-35 152.1 340 70.3
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 9.9e-35 151.8 96 76.0
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 4.9e-34 149.4 106 71.7
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 8.4e-34 148.7 106 70.8
Hund25193 Selenicereus undatus HOM05D003751 ORTHO05D004765 1.9e-33 147.5 78 85.9
CSS0000444 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 4.2e-33 146.4 351 57.5
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 7.1e-33 145.6 106 68.9
SalBow2G2522 Salvia bowleyana HOM05D003751 ORTHO05D004765 7.1e-33 145.6 366 68.9
SalBow2G2568 Salvia bowleyana HOM05D003751 ORTHO05D004765 7.1e-33 145.6 366 67.8
Thhalv10008166m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 1.8e-31 141.0 100 71.0
CARHR014280 Cardamine hirsuta HOM05D003751 ORTHO05D004765 5.1e-31 139.4 106 63.2
DCAR_007183 Daucus carota HOM05D003751 ORTHO05D004765 1.9e-30 137.5 357 66.9
SalBow2G0317 Salvia bowleyana HOM05D003751 ORTHO05D004765 7.4e-30 135.6 222 84.7
Carub.0001s1361 Capsella rubella HOM05D003751 ORTHO05D004765 3.7e-29 133.3 104 67.3
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 4.0e-28 129.8 102 62.7
Oeu031422.1 Olea europaea HOM05D003751 ORTHO05D004765 2.7e-24 117.1 86 74.4
SMO307G0068 Selaginella moellendorffii HOM05D003751 ORTHO05D004765 1.3e-23 114.8 79 64.6
Nitab4.5_0017073g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 2.3e-23 114.0 70 78.6
Nitab4.5_0004304g0080 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.5e-22 111.3 78 70.5
AagrBONN_evm.TU.Sc2ySwM_228.5257 Anthoceros agrestis HOM05D003751 ORTHO05D004765 4.3e-22 109.8 104 59.6
Sopen05g021560 Solanum pennellii HOM05D003751 ORTHO05D004765 8.4e-18 95.5 50 82.0
SMO239G0097 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 1.9e-17 94.4 65 63.1
Dinv16710 Davidia involucrata HOM05D003751 ORTHO05D004765 1.6e-16 91.3 245 76.3
SMO239G0021 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 3.5e-16 90.1 65 61.5
Actinidia28633 Actinidia chinensis HOM05D003751 ORTHO05D004765 4.6e-16 89.7 294 65.0
RcHm_v2.0_Chr3g0459551 Rosa chinensis HOM05D003751 ORTHO05D004765 1.6e-13 81.3 49 83.7
SEGI_40768 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 1.1e-12 78.6 63 58.7
Sopen05g021540 Solanum pennellii HOM05D003751 ORTHO05D004765 1.1e-12 78.6 43 81.4
BolC2t12198H Brassica oleracea HOM05D003751 ORTHO05D017703 9.0e-12 75.5 39 89.7
Sopen01g022300 Solanum pennellii HOM05D003751 ORTHO05D004765 4.5e-11 73.2 45 75.6
Lj3A1031T31 Lonicera japonica HOM05D003751 ORTHO05D004765 5.9e-11 72.8 136 36.8
C02p61470 Brassica napus HOM05D003751 ORTHO05D017703 7.6e-11 72.4 39 84.6
Gohir.A03G103400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.8e-07 61.2 33 87.9
BraA02t09094Z Brassica rapa HOM05D003751 ORTHO05D004765 8.8e-07 58.9 30 86.7
Oeu027875.1 Olea europaea HOM05D003751 ORTHO05D004765 1.1e-06 58.5 70 42.9


User provided reference genes

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