Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 4.9e-279 963.8 470 100.0
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 2.5e-278 961.4 470 99.8
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.6e-277 958.7 470 99.4
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 5.0e-255 884.0 470 91.9
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 1.1e-251 872.8 468 90.2
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.7e-247 859.0 465 91.0
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 5.0e-223 777.7 465 80.0
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 5.0e-215 751.1 467 77.9
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 7.8e-208 727.2 465 74.2
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 1.1e-204 716.8 465 72.3
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 1.8e-204 716.1 465 73.8
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 2.6e-203 712.2 463 73.9
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 3.4e-203 711.8 467 73.0
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 2.9e-202 708.8 466 71.7
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 1.9e-201 706.1 465 73.5
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 1.7e-199 699.5 466 71.0
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 1.5e-198 696.4 463 71.7
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 4.7e-197 691.4 465 71.0
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 1.1e-196 690.3 467 70.0
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 1.4e-196 689.9 470 70.4
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 8.9e-196 687.2 465 72.7
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 1.2e-195 686.8 469 70.4
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 3.4e-195 685.3 468 69.9
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 7.6e-195 684.1 465 69.5
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 6.0e-192 674.5 486 67.1
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 7.8e-192 674.1 466 68.2
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 7.3e-190 667.5 465 69.0
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 4.0e-188 661.8 467 69.2
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 4.0e-188 661.8 467 67.5
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 1.7e-186 656.4 466 68.2
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 1.7e-186 656.4 437 70.9
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 2.9e-186 655.6 467 67.9
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 1.1e-185 653.7 449 68.4
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 9.3e-185 650.6 469 67.2
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 1.2e-184 650.2 467 66.8
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 7.8e-184 647.5 465 66.5
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 3.0e-183 645.6 471 66.2
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 3.9e-183 645.2 465 66.0
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 2.5e-182 642.5 459 66.0
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 3.3e-182 642.1 464 65.9
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 4.3e-182 641.7 461 66.4
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 5.6e-182 641.3 471 66.2
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 9.6e-182 640.6 475 65.7
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 1.6e-181 639.8 464 65.9
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 2.8e-181 639.0 414 74.2
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 6.2e-181 637.9 466 65.9
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 1.1e-180 637.1 469 64.2
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 1.4e-180 636.7 467 64.5
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 1.8e-180 636.3 465 65.8
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 5.3e-180 634.8 467 66.0
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 6.9e-180 634.4 467 66.2
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 2.0e-179 632.9 460 64.8
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 3.4e-179 632.1 464 65.9
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 5.8e-179 631.3 467 64.7
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 7.6e-179 630.9 459 64.9
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 9.9e-179 630.6 463 65.7
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 1.7e-178 629.8 465 64.9
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 2.9e-178 629.0 463 65.0
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 3.8e-178 628.6 462 65.4
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 6.4e-178 627.9 465 65.4
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 1.9e-177 626.3 461 65.5
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 4.2e-177 625.2 465 63.4
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 1.9e-174 616.3 461 65.3
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 6.2e-173 611.3 461 64.6
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 8.1e-173 610.9 463 65.0
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 3.1e-172 609.0 461 64.6
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 6.9e-172 607.8 460 63.5
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 9.0e-172 607.4 461 64.2
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 9.0e-172 607.4 461 64.2
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 1.2e-171 607.1 461 64.4
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 2.6e-171 605.9 460 62.8
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 7.6e-171 604.4 459 64.1
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 1.3e-170 603.6 460 62.8
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 1.7e-170 603.2 444 65.8
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 2.2e-170 602.8 438 65.5
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 1.1e-169 600.5 460 62.6
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 5.5e-169 598.2 468 62.0
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 7.1e-169 597.8 459 61.9
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 9.3e-169 597.4 437 65.2
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 1.2e-168 597.0 459 62.3
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 1.6e-168 596.7 459 61.9
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 3.5e-168 595.5 458 62.7
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 4.6e-168 595.1 473 61.7
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 7.9e-168 594.3 468 61.8
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 1.3e-167 593.6 459 62.1
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 1.8e-167 593.2 463 62.6
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 3.9e-167 592.0 419 67.3
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 8.7e-167 590.9 459 62.3
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 1.5e-166 590.1 454 64.3
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 2.8e-165 585.9 467 62.5
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 2.2e-162 576.2 490 61.8
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 3.2e-161 572.4 442 62.2
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 5.1e-159 565.1 460 60.4
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 5.1e-159 565.1 466 57.7
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 6.7e-159 564.7 431 62.2
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 4.3e-158 562.0 459 60.6
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 9.7e-158 560.8 466 58.2
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 3.7e-157 558.9 468 59.8
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 3.7e-157 558.9 437 61.3
SalBow2G3145 Salvia bowleyana HOM05D004011 ORTHO05D005290 8.2e-157 557.8 466 59.0
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 7.7e-155 551.2 484 57.2
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 2.9e-154 549.3 460 59.6
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 3.8e-154 548.9 437 62.5
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 1.4e-153 547.0 433 61.7
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 1.9e-153 546.6 445 60.7
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 7.2e-153 544.7 436 60.3
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 1.8e-151 540.0 497 56.3
Cpa.g.sc5.292 Carica papaya HOM05D004011 ORTHO05D005290 4.3e-150 535.4 468 59.6
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 7.4e-150 534.6 464 58.2
PSO423G0236 Papaver somniferum HOM05D004011 ORTHO05D005290 1.3e-149 533.9 469 56.7
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 4.8e-149 531.9 469 55.2
vmacro01220 Vaccinium macrocarpon HOM05D004011 ORTHO05D005290 6.9e-148 528.1 342 73.4
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 2.6e-147 526.2 458 54.6
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 7.2e-145 518.1 423 59.6
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 1.2e-139 500.7 388 62.6
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 9.4e-137 491.1 352 64.8
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 2.1e-136 490.0 446 57.0
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 2.6e-131 473.0 364 62.6
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 5.5e-129 465.3 433 55.0
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 5.2e-127 458.8 508 48.2
AUR62026286 Chenopodium quinoa HOM05D004011 ORTHO05D005290 8.5e-122 441.4 501 47.5
Pp3c17_17430 Physcomitrium patens HOM05D004011 ORTHO05D005290 1.2e-104 384.4 472 44.5
SMO331G0048 Selaginella moellendorffii HOM05D004011 ORTHO05D005290 1.5e-89 334.3 458 40.8
Mapoly0042s0014 Marchantia polymorpha HOM05D004011 ORTHO05D005290 6.8e-87 325.5 432 41.0
Atru.chr9.2355 Acer truncatum HOM05D004011 ORTHO05D005290 1.5e-86 324.3 240 69.6
arahy.Tifrunner.gnm1.ann1.NNWV08 Arachis hypogaea HOM05D004011 ORTHO05D005290 7.6e-78 295.4 262 56.9
Atru.chr5.3340 Acer truncatum HOM05D004011 ORTHO05D005290 4.6e-75 286.2 196 73.5
Atru.chr1.621 Acer truncatum HOM05D004011 ORTHO05D005290 7.8e-75 285.4 196 73.5
Actinidia08203 Actinidia chinensis HOM05D004011 ORTHO05D005290 3.3e-73 280.0 189 68.8
Actinidia08204 Actinidia chinensis HOM05D004011 ORTHO05D005290 2.4e-71 273.9 198 66.7
BraA08t32877Z Brassica rapa HOM05D004011 ORTHO05D005290 2.2e-69 267.3 225 58.7
BolC7t42515H Brassica oleracea HOM05D004011 ORTHO05D005290 8.4e-61 238.8 222 57.2
C07p19960 Brassica napus HOM05D004011 ORTHO05D005290 3.9e-58 229.9 219 55.7
Medtr5g037420 Medicago truncatula HOM05D004011 ORTHO05D005290 8.1e-56 222.2 148 66.9
A07p13340 Brassica napus HOM05D004011 ORTHO05D005290 2.2e-53 214.2 421 35.2
C05p23600 Brassica napus HOM05D004011 ORTHO05D005290 1.6e-48 198.0 315 39.7
Atru.chr10.818 Acer truncatum HOM05D004011 ORTHO05D005290 3.0e-42 177.2 273 39.2
TPR.G21863 Trifolium pratense HOM05D004011 ORTHO05D005290 1.4e-39 168.3 110 67.3
BcaC06g35090 Brassica carinata HOM05D004011 ORTHO05D005290 4.5e-38 163.3 178 51.7
Atru.chr2.3843 Acer truncatum HOM05D004011 ORTHO05D005290 2.5e-33 147.5 193 40.9
AL1G38380 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 6.9e-31 139.4 115 59.1
AL1G38370 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 1.5e-30 138.3 109 63.3
BcaC06g35091 Brassica carinata HOM05D004011 ORTHO05D005290 2.2e-29 134.4 213 39.9
TAR636G0334 Trochodendron aralioides HOM05D004011 ORTHO05D005290 1.4e-28 131.7 83 72.3
Cfa021096 Carpinus fangiana HOM05D004011 ORTHO05D000073 2.5e-28 131.0 94 72.3
BraA07t29105Z Brassica rapa HOM05D004011 ORTHO05D005290 7.2e-28 129.4 132 50.8
RcHm_v2.0_Chr7g0206221 Rosa chinensis HOM05D004011 ORTHO05D005290 4.7e-27 126.7 57 89.5
BolC7t42514H Brassica oleracea HOM05D004011 ORTHO05D005290 1.1e-25 122.1 213 38.5
BolC5t31071H Brassica oleracea HOM05D004011 ORTHO05D005290 7.4e-25 119.4 144 45.8
BolC5t31081H Brassica oleracea HOM05D004011 ORTHO05D005290 2.8e-24 117.5 144 45.1
BolC5t31079H Brassica oleracea HOM05D004011 ORTHO05D005290 5.3e-23 113.2 76 65.8
BolC7t42512H Brassica oleracea HOM05D004011 ORTHO05D005290 7.0e-23 112.8 120 50.0
Duzib268G0988 Durio zibethinus HOM05D004011 ORTHO05D005290 7.0e-23 112.8 90 61.1
BolC5t31070H Brassica oleracea HOM05D004011 ORTHO05D005290 1.2e-22 112.1 76 65.8
C07p19930 Brassica napus HOM05D004011 ORTHO05D005290 1.0e-21 109.0 117 50.4
C07p19950 Brassica napus HOM05D004011 ORTHO05D005290 6.5e-21 106.3 217 37.3
Cc11_g13680 Coffea canephora HOM05D004011 ORTHO05D005290 6.5e-21 106.3 80 58.8
BcaB04g18716 Brassica carinata HOM05D000040 ORTHO05D005442 3.2e-20 104.0 114 48.2
BolC5t31074H Brassica oleracea HOM05D004011 ORTHO05D005290 8.0e-19 99.4 63 69.8
BcaB07g32391 Brassica carinata HOM05D026641 ORTHO05D027156 1.8e-18 98.2 103 52.4
Atru.chr1.3881 Acer truncatum HOM05D004011 ORTHO05D023183 2.0e-17 94.7 56 73.2
AL2G16820 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 1.1e-15 89.0 56 69.6
SEGI_16255 Sequoiadendron giganteum HOM05D004011 ORTHO05D005290 1.4e-15 88.6 112 43.8
SMO203G0050 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 8.5e-13 79.3 186 29.0
SMO252G0024 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.1e-12 79.0 176 29.5
SMO110G0005 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.6e-11 75.1 176 28.4
A07p13320 Brassica napus HOM05D004011 ORTHO05D005290 1.4e-10 72.0 53 64.2
A07p13600 Brassica napus HOM05D004011 ORTHO05D100703 1.5e-09 68.6 53 58.5
RcHm_v2.0_Chr2g0130381 Rosa chinensis HOM05D000321 ORTHO05D000204 2.0e-09 68.2 39 74.4
BraA07t29103Z Brassica rapa HOM05D001102 ORTHO05D021602 7.5e-09 66.2 40 72.5
CAN.G1697.3 Capsicum annuum HOM05D013442 ORTHO05D016868 8.3e-08 62.8 68 42.6
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 8.3e-08 62.8 258 24.8
A07p13570 Brassica napus HOM05D004011 ORTHO05D006437 4.1e-07 60.5 57 56.1
A09p40560 Brassica napus HOM05D004011 ORTHO05D033156 5.4e-07 60.1 50 50.0
SMO331G0015 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 2.0e-06 58.2 170 26.5
Nitab4.5_0002852g0030 Nicotiana tabacum HOM05D001347 ORTHO05D001198 2.7e-06 57.8 42 57.1
C05p23620 Brassica napus HOM05D004011 ORTHO05D033156 3.5e-06 57.4 50 50.0
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.5e-06 57.0 178 26.4


User provided reference genes

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