Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G0929 Fragaria x ananassa HOM05D000086 ORTHO05D005495 2.4e-44 181.8 93 100.0
FvH4_4g22111 Fragaria vesca HOM05D000086 ORTHO05D005495 2.9e-42 174.9 89 100.0
RcHm_v2.0_Chr6g0303581 Rosa chinensis HOM05D000086 ORTHO05D005495 5.2e-23 110.9 91 64.8
FAN20G1138 Fragaria x ananassa HOM05D000086 ORTHO05D005495 4.4e-22 107.8 91 61.5
FvH4_2g38021 Fragaria vesca HOM05D000086 ORTHO05D005495 7.6e-22 107.1 92 63.0
FAN15G1857 Fragaria x ananassa HOM05D000086 ORTHO05D005495 1.3e-21 106.3 92 63.0
FAN27G0508 Fragaria x ananassa HOM05D000086 ORTHO05D005495 1.7e-21 105.9 91 61.5
Sc15g0004700 Simmondsia chinensis HOM05D000086 ORTHO05D005495 1.4e-20 102.8 90 57.8
Ah.00g000700 Amaranthus hybridus HOM05D000086 ORTHO05D005495 5.4e-20 100.9 90 56.7
Potri.005G244500 Populus trichocarpa HOM05D000086 ORTHO05D005495 9.2e-20 100.1 89 55.1
COL.COLO4_26096 Corchorus olitorius HOM05D000086 ORTHO05D005495 1.6e-19 99.4 93 53.8
Hma1.2p1_0023F.1_g015760 Hydrangea macrophylla HOM05D000086 ORTHO05D005495 1.6e-19 99.4 90 53.3
Thecc.08G050200 Theobroma cacao HOM05D000086 ORTHO05D005495 1.6e-19 99.4 91 58.2
SGA_v2.0_scaffold292G47385 Striga asiatica HOM05D000086 ORTHO05D005495 2.1e-19 99.0 90 56.7
AUR62013893 Chenopodium quinoa HOM05D000003 ORTHO05D005495 2.7e-19 98.6 87 56.3
Sabra02G0013900 Salix brachista HOM05D000086 ORTHO05D005495 2.7e-19 98.6 92 56.5
AUR62036701 Chenopodium quinoa HOM05D000086 ORTHO05D005495 3.5e-19 98.2 87 56.3
Sabra05G0189100 Salix brachista HOM05D000086 ORTHO05D005495 3.5e-19 98.2 89 53.9
Duzib093G0904 Durio zibethinus HOM05D000086 ORTHO05D005495 4.6e-19 97.8 91 56.0
Potri.002G017400 Populus trichocarpa HOM05D000086 ORTHO05D005495 4.6e-19 97.8 92 54.3
Ah.11g040130 Amaranthus hybridus HOM05D000086 ORTHO05D005495 7.8e-19 97.1 91 58.2
Glyma.06G021400 Glycine max HOM05D000086 ORTHO05D005495 7.8e-19 97.1 92 54.3
Oeu026124.1 Olea europaea HOM05D000086 ORTHO05D005495 7.8e-19 97.1 91 52.7
Manes.05G143500 Manihot esculenta HOM05D000086 ORTHO05D005495 1.0e-18 96.7 90 55.6
Cc10_g01210 Coffea canephora HOM05D000086 ORTHO05D005495 1.3e-18 96.3 96 53.1
Cfa013998 Carpinus fangiana HOM05D000086 ORTHO05D005495 1.7e-18 95.9 91 56.0
GSVIVG01008756001 Vitis vinifera HOM05D000086 ORTHO05D005495 2.3e-18 95.5 90 56.7
arahy.Tifrunner.gnm1.ann1.XEB2B9 Arachis hypogaea HOM05D000086 ORTHO05D005495 3.0e-18 95.1 87 54.0
Cpa.g.sc26.274 Carica papaya HOM05D000086 ORTHO05D005495 3.9e-18 94.7 89 53.9
Haze_22691 Corylus avellana HOM05D000086 ORTHO05D005495 3.9e-18 94.7 92 55.4
Sc02g0008810 Simmondsia chinensis HOM05D000086 ORTHO05D005495 3.9e-18 94.7 97 51.5
EL10Ac1g02113 Beta vulgaris HOM05D000086 ORTHO05D005495 5.1e-18 94.4 88 53.4
Duzib116G0412 Durio zibethinus HOM05D000086 ORTHO05D005495 5.1e-18 94.4 91 56.0
Lsat_1_v5_gn_2_7621 Lactuca sativa HOM05D000086 ORTHO05D005495 5.1e-18 94.4 89 51.7
Atru.chr13.228 Acer truncatum HOM05D000086 ORTHO05D005495 6.6e-18 94.0 95 49.5
CANSAT25G1812 Cannabis sativa HOM05D000086 ORTHO05D005495 6.6e-18 94.0 93 53.8
Glyma.04G021200 Glycine max HOM05D000086 ORTHO05D005495 8.6e-18 93.6 92 52.2
Lj5g0000916 Lotus japonicus HOM05D000086 ORTHO05D005495 8.6e-18 93.6 88 54.5
Gorai.010G001500 Gossypium raimondii HOM05D000086 ORTHO05D005495 1.1e-17 93.2 91 51.6
CSS0030807 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D005495 1.5e-17 92.8 92 51.1
CSS0050287 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D005495 1.5e-17 92.8 92 51.1
Phvul.009G019300 Phaseolus vulgaris HOM05D000086 ORTHO05D005495 1.5e-17 92.8 90 55.6
Cfa014000 Carpinus fangiana HOM05D000086 ORTHO05D005495 1.9e-17 92.4 90 53.3
Gohir.A06G001300 Gossypium hirsutum HOM05D000086 ORTHO05D005495 1.9e-17 92.4 91 51.6
Medtr3g114500 Medicago truncatula HOM05D000086 ORTHO05D005495 1.9e-17 92.4 87 55.2
DCAR_016739 Daucus carota HOM05D000086 ORTHO05D005495 2.5e-17 92.0 92 51.1
Lalb_Chr19g0131551 Lupinus albus HOM05D000157 ORTHO05D005495 2.5e-17 92.0 94 50.0
Nitab4.5_0004361g0050 Nicotiana tabacum HOM05D000086 ORTHO05D005495 2.5e-17 92.0 96 51.0
Peaxi162Scf00772g00016 Petunia axillaris HOM05D000086 ORTHO05D005495 2.5e-17 92.0 90 56.7
Phvul.001G003400 Phaseolus vulgaris HOM05D000086 ORTHO05D005495 2.5e-17 92.0 89 51.7
TWI56G1323 Tripterygium wilfordii HOM05D000086 ORTHO05D005495 2.5e-17 92.0 87 52.9
Haze_22693 Corylus avellana HOM05D000086 ORTHO05D005495 3.3e-17 91.7 89 53.9
Lalb_Chr03g0033551 Lupinus albus HOM05D000086 ORTHO05D005495 3.3e-17 91.7 88 52.3
Psat6g001320 Pisum sativum HOM05D000086 ORTHO05D005495 3.3e-17 91.7 85 55.3
CiPaw.07G144300 Carya illinoinensis HOM05D000086 ORTHO05D005495 4.3e-17 91.3 89 49.4
Migut.C00892 Erythranthe guttata HOM05D000086 ORTHO05D005495 4.3e-17 91.3 93 53.8
Manes.18G010000 Manihot esculenta HOM05D000086 ORTHO05D005495 4.3e-17 91.3 90 51.1
HanXRQChr14g0429591 Helianthus annuus HOM05D000086 ORTHO05D005495 5.6e-17 90.9 86 54.7
Lsat_1_v5_gn_8_29501 Lactuca sativa HOM05D000086 ORTHO05D005495 5.6e-17 90.9 88 52.3
MD15G1007400 Malus domestica HOM05D000086 ORTHO05D005495 5.6e-17 90.9 93 54.8
Gohir.D05G186600 Gossypium hirsutum HOM05D000086 ORTHO05D005495 9.6e-17 90.1 91 49.5
Gorai.009G191900 Gossypium raimondii HOM05D000086 ORTHO05D005495 9.6e-17 90.1 91 49.5
Gohir.A05G183900 Gossypium hirsutum HOM05D000086 ORTHO05D005495 1.2e-16 89.7 91 49.5
VMungo1309G0612 Vigna mungo HOM05D000086 ORTHO05D005495 1.2e-16 89.7 90 52.2
QL02p012665 Quercus lobata HOM05D000086 ORTHO05D005495 2.1e-16 89.0 92 50.0
HanXRQChr12g0366761 Helianthus annuus HOM05D000086 ORTHO05D005495 3.6e-16 88.2 89 51.7
Prupe.1G360300 Prunus persica HOM05D000086 ORTHO05D005495 4.7e-16 87.8 92 52.2
TPR.G26380 Trifolium pratense HOM05D000086 ORTHO05D005495 4.7e-16 87.8 86 52.3
VMungo0647G2197 Vigna mungo HOM05D000086 ORTHO05D005495 4.7e-16 87.8 87 51.7
TPR.G16964 Trifolium pratense HOM05D000086 ORTHO05D005495 8.1e-16 87.0 90 51.1
THA.LOC104813221 Tarenaya hassleriana HOM05D000086 ORTHO05D005495 1.1e-15 86.7 97 47.4
TPR.G38204 Trifolium pratense HOM05D000086 ORTHO05D005495 1.1e-15 86.7 88 52.3
Ciclev10002708m.g Citrus clementina HOM05D000086 ORTHO05D005495 1.8e-15 85.9 92 48.9
Glyma.14G221800 Glycine max HOM05D000086 ORTHO05D005495 1.8e-15 85.9 87 50.6
Oeu014022.1 Olea europaea HOM05D000086 ORTHO05D005495 1.8e-15 85.9 90 50.0
TPR.G38345 Trifolium pratense HOM05D000086 ORTHO05D005495 1.8e-15 85.9 94 45.7
HanXRQChr13g0387001 Helianthus annuus HOM05D000086 ORTHO05D005495 2.4e-15 85.5 89 48.3
Lalb_Chr23g0266041 Lupinus albus HOM05D000086 ORTHO05D005495 2.4e-15 85.5 88 48.9
Ca_13481_v3 Cicer arietinum L. HOM05D000086 ORTHO05D005495 3.1e-15 85.1 90 51.1
MD08G1008600 Malus domestica HOM05D000086 ORTHO05D005495 3.1e-15 85.1 93 52.7
Peaxi162Scf00289g00074 Petunia axillaris HOM05D000086 ORTHO05D005495 3.1e-15 85.1 90 52.2
PGSC0003DMG400009881 Solanum tuberosum HOM05D000086 ORTHO05D005495 3.1e-15 85.1 96 49.0
Ca_15471_v3 Cicer arietinum L. HOM05D000086 ORTHO05D005495 4.0e-15 84.7 88 51.1
ECA233G5046 Erigeron canadensis HOM05D000086 ORTHO05D005495 4.0e-15 84.7 90 52.2
Lj4P800T16 Lonicera japonica HOM05D000086 ORTHO05D005495 4.0e-15 84.7 89 52.8
SpUn1114_0010 Schrenkiella parvula HOM05D000086 ORTHO05D005495 4.0e-15 84.7 95 51.6
Nn5g30836 Nelumbo nucifera HOM05D000086 ORTHO05D005495 5.2e-15 84.3 92 53.3
CARHR184540 Cardamine hirsuta HOM05D000157 ORTHO05D005495 6.8e-15 84.0 95 49.5
PGR083G1632 Punica granatum HOM05D000157 ORTHO05D005495 6.8e-15 84.0 99 49.5
SGA_v2.0_scaffold145G36087 Striga asiatica HOM05D000086 ORTHO05D005495 6.8e-15 84.0 89 50.6
THA.LOC104806061 Tarenaya hassleriana HOM05D000086 ORTHO05D005495 6.8e-15 84.0 97 47.4
Medtr1g026070 Medicago truncatula HOM05D000086 ORTHO05D005495 8.9e-15 83.6 86 52.3
Solyc12g094385.1 Solanum lycopersicum HOM05D000086 ORTHO05D005495 8.9e-15 83.6 95 47.4
Sopen04g035520 Solanum pennellii HOM05D000086 ORTHO05D005495 1.5e-14 82.8 96 47.9
Sopen12g031270 Solanum pennellii HOM05D000086 ORTHO05D005495 1.5e-14 82.8 95 47.4
Solyc04g081890.1 Solanum lycopersicum HOM05D000086 ORTHO05D005495 2.0e-14 82.4 96 47.9
BcaB02g11383 Brassica carinata HOM05D000086 ORTHO05D005495 2.6e-14 82.0 95 50.5
Aa31LG9G12300 Aethionema arabicum HOM05D000086 ORTHO05D005495 4.4e-14 81.3 96 47.9
Thecc.07G152300 Theobroma cacao HOM05D000086 ORTHO05D005495 4.4e-14 81.3 91 47.3
AL25U10020 Arabidopsis lyrata HOM05D000086 ORTHO05D005495 7.6e-14 80.5 95 47.4
AL8G19580 Arabidopsis lyrata HOM05D000086 ORTHO05D005495 7.6e-14 80.5 95 47.4
AT5G42200 Arabidopsis thaliana HOM05D000086 ORTHO05D005495 1.7e-13 79.3 95 46.3
Actinidia15457 Actinidia chinensis HOM05D000086 ORTHO05D005495 4.9e-13 77.8 77 51.9
Carub.0008s0710 Capsella rubella HOM05D000086 ORTHO05D005495 6.4e-13 77.4 91 46.2
HanXRQChr14g0429601 Helianthus annuus HOM05D000086 ORTHO05D005495 6.4e-13 77.4 85 48.2
Glyma.17G260700 Glycine max HOM05D000086 ORTHO05D005495 3.2e-12 75.1 90 45.6
A02p27040 Brassica napus HOM05D000086 ORTHO05D005495 4.2e-12 74.7 95 46.3
BraA02t07721Z Brassica rapa HOM05D000086 ORTHO05D005495 4.2e-12 74.7 95 46.3
Rhsim06G0013000 Rhododendron simsii HOM05D000086 ORTHO05D005495 4.2e-12 74.7 76 51.3
BcaC03g16473 Brassica carinata HOM05D000086 ORTHO05D005495 5.4e-12 74.3 95 46.3
C02p42820 Brassica napus HOM05D000086 ORTHO05D005495 5.4e-12 74.3 95 46.3
Peaxi162Scf00174g00056 Petunia axillaris HOM05D000086 ORTHO05D005495 7.1e-12 73.9 82 50.0
ECA238G4114 Erigeron canadensis HOM05D000086 ORTHO05D005495 2.7e-11 72.0 69 50.7
CSS0026950 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D005495 4.6e-11 71.2 87 46.0
MBI16_g14293_MAGBIO Magnolia biondii HOM05D000196 ORTHO05D000279 7.8e-11 70.5 88 44.3
Actinidia17015 Actinidia chinensis HOM05D000001 ORTHO05D009837 1.7e-10 69.3 89 46.1
MBI05_g33955_MAGBIO Magnolia biondii HOM05D000086 ORTHO05D005495 3.0e-10 68.6 89 47.2
GSVIVG01008754001 Vitis vinifera HOM05D000086 ORTHO05D005495 6.6e-10 67.4 90 41.1
PGSC0003DMG400029328 Solanum tuberosum HOM05D000086 ORTHO05D005495 1.5e-09 66.2 95 41.1
Lj5g0008708 Lotus japonicus HOM05D000086 ORTHO05D005495 5.6e-09 64.3 84 42.9
FAN17G0724 Fragaria x ananassa HOM05D000564 ORTHO05D005495 9.6e-09 63.5 47 68.1
VMungo0540G0733 Vigna mungo HOM05D000086 ORTHO05D005495 9.6e-09 63.5 92 44.6
Migut.N01935 Erythranthe guttata HOM05D000086 ORTHO05D005495 3.6e-08 61.6 43 65.1
Lj1g0006199 Lotus japonicus HOM05D000086 ORTHO05D005495 1.1e-07 60.1 89 40.4
Nitab4.5_0005433g0010 Nicotiana tabacum HOM05D000086 ORTHO05D005495 1.1e-07 60.1 85 40.0
Nitab4.5_0001936g0020 Nicotiana tabacum HOM05D000086 ORTHO05D005495 1.8e-07 59.3 92 42.4
Nitab4.5_0004392g0020 Nicotiana tabacum HOM05D000157 ORTHO05D005495 1.8e-07 59.3 75 44.0
Lj1g0006329 Lotus japonicus HOM05D000086 ORTHO05D005495 5.3e-07 57.8 89 40.4
Aqoxy5G01112 Aquilegia oxysepala HOM05D000440 ORTHO05D005495 2.0e-06 55.8 87 37.9
Nitab4.5_0000498g0070 Nicotiana tabacum HOM05D000086 ORTHO05D005495 2.6e-06 55.5 82 40.2


User provided reference genes

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