Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_4g26390 Fragaria vesca HOM05D004794 ORTHO05D005875 7.1e-190 667.2 348 100.0
FAN12G0017 Fragaria x ananassa HOM05D004794 ORTHO05D005875 7.1e-190 667.2 348 100.0
FAN12G0914 Fragaria x ananassa HOM05D004794 ORTHO05D005875 7.1e-190 667.2 348 100.0
FAN07G1519 Fragaria x ananassa HOM05D004794 ORTHO05D005875 2.1e-186 655.6 348 98.9
FAN17G0450 Fragaria x ananassa HOM05D004794 ORTHO05D005875 4.8e-178 627.9 348 96.8
FAN22G0499 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.1e-177 626.7 348 96.6
RcHm_v2.0_Chr4g0434021 Rosa chinensis HOM05D004794 ORTHO05D005875 1.2e-173 613.2 352 93.2
Prupe.1G320000 Prunus persica HOM05D004794 ORTHO05D005875 1.1e-158 563.5 354 84.2
MD16G1034600 Malus domestica HOM05D004794 ORTHO05D005875 1.5e-152 543.1 355 82.3
MD13G1032500 Malus domestica HOM05D004794 ORTHO05D005875 1.9e-150 536.2 359 81.3
PGR102G0643 Punica granatum HOM05D004794 ORTHO05D005875 1.6e-133 479.9 358 74.3
QL01p003046 Quercus lobata HOM05D004794 ORTHO05D005875 6.1e-133 478.0 360 74.4
ClCG05G022340 Citrullus lanatus HOM05D004794 ORTHO05D005875 1.3e-130 470.3 352 74.7
CANSAT01G0565 Cannabis sativa HOM05D004794 ORTHO05D005875 2.2e-130 469.5 368 70.9
Ciclev10015744m.g Citrus clementina HOM05D004794 ORTHO05D005875 3.7e-130 468.8 358 71.2
TWI79G0577 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 3.7e-130 468.8 364 72.3
Gohir.D12G147200 Gossypium hirsutum HOM05D004794 ORTHO05D005875 1.8e-129 466.5 357 73.4
Gorai.008G158400 Gossypium raimondii HOM05D004794 ORTHO05D005875 1.8e-129 466.5 357 73.4
Sed0004857 Sechium edule HOM05D004794 ORTHO05D005875 1.8e-129 466.5 353 73.7
Thecc.02G215600 Theobroma cacao HOM05D004794 ORTHO05D005875 4.1e-129 465.3 361 71.2
MELO3C012288.2 Cucumis melo HOM05D004794 ORTHO05D005875 1.2e-128 463.8 346 73.7
Manes.14G109500 Manihot esculenta HOM05D004794 ORTHO05D005875 1.2e-128 463.8 365 71.8
Cfa015814 Carpinus fangiana HOM05D004794 ORTHO05D005875 1.6e-128 463.4 363 73.0
Gohir.A12G142300 Gossypium hirsutum HOM05D004794 ORTHO05D005875 1.6e-128 463.4 361 73.1
CiPaw.05G245300 Carya illinoinensis HOM05D004794 ORTHO05D005875 2.7e-128 462.6 367 72.5
Manes.06G063100 Manihot esculenta HOM05D004794 ORTHO05D005875 3.5e-128 462.2 361 71.5
CsaV3_5G034760 Cucumis sativus L. HOM05D004794 ORTHO05D005875 1.0e-127 460.7 352 73.3
Eucgr.B02866 Eucalyptus grandis HOM05D004794 ORTHO05D005875 1.3e-127 460.3 370 71.1
Actinidia31991 Actinidia chinensis HOM05D004794 ORTHO05D005875 5.0e-127 458.4 359 72.1
Dinv04904 Davidia involucrata HOM05D004794 ORTHO05D005875 5.0e-127 458.4 359 70.8
Lj3A877T98 Lonicera japonica HOM05D004794 ORTHO05D005875 6.5e-127 458.0 356 72.8
Glyma.10G268000 Glycine max HOM05D004794 ORTHO05D005875 1.1e-126 457.2 317 76.7
TWI75G0950 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 1.1e-126 457.2 359 71.6
Dinv16165 Davidia involucrata HOM05D004794 ORTHO05D005875 5.5e-126 454.9 331 74.0
Atru.chr11.334 Acer truncatum HOM05D004794 ORTHO05D005875 1.2e-125 453.8 363 70.5
Glyma.20G123100 Glycine max HOM05D004794 ORTHO05D005875 1.2e-125 453.8 317 77.0
Phvul.007G034300 Phaseolus vulgaris HOM05D004794 ORTHO05D005875 1.2e-125 453.8 317 76.3
Atru.chr11.341 Acer truncatum HOM05D004794 ORTHO05D005875 2.7e-125 452.6 363 70.2
AL5G10060 Arabidopsis lyrata HOM05D004794 ORTHO05D005875 2.7e-125 452.6 351 71.2
Hund25018 Selenicereus undatus HOM05D004794 ORTHO05D005875 6.1e-125 451.4 347 72.6
GSVIVG01011805001 Vitis vinifera HOM05D004794 ORTHO05D005875 6.1e-125 451.4 361 70.6
Psat6g222720 Pisum sativum HOM05D004794 ORTHO05D005875 8.0e-125 451.1 303 77.6
THA.LOC104805049 Tarenaya hassleriana HOM05D004794 ORTHO05D005875 1.0e-124 450.7 366 69.4
TAR374G0638 Trochodendron aralioides HOM05D004794 ORTHO05D005875 1.0e-124 450.7 335 73.4
AT2G01110 Arabidopsis thaliana HOM05D004794 ORTHO05D005875 1.8e-124 449.9 351 71.5
C02p49070 Brassica napus HOM05D004794 ORTHO05D005875 1.8e-124 449.9 351 70.7
ATR0691G049 Amborella trichopoda HOM05D004794 ORTHO05D005875 3.0e-124 449.1 313 75.4
Hma1.2p1_0114F.1_g055470 Hydrangea macrophylla HOM05D004794 ORTHO05D005875 3.0e-124 449.1 308 76.3
BcaC06g31333 Brassica carinata HOM05D004794 ORTHO05D005875 5.2e-124 448.4 358 70.1
arahy.Tifrunner.gnm1.ann1.B80FEM Arachis hypogaea HOM05D004794 ORTHO05D005875 1.2e-123 447.2 305 78.0
Nitab4.5_0013146g0030 Nicotiana tabacum HOM05D004794 ORTHO05D005875 1.2e-123 447.2 357 70.3
CARHR143660 Cardamine hirsuta HOM05D004794 ORTHO05D005875 1.5e-123 446.8 348 71.6
Lalb_Chr02g0145631 Lupinus albus HOM05D004794 ORTHO05D005875 1.5e-123 446.8 300 76.3
Sc04g0005890 Simmondsia chinensis HOM05D004794 ORTHO05D005875 2.0e-123 446.4 315 77.5
A06p44670 Brassica napus HOM05D004794 ORTHO05D005875 4.4e-123 445.3 358 70.4
BcaC03g16998 Brassica carinata HOM05D004794 ORTHO05D005875 5.7e-123 444.9 354 70.1
Aa31sc79G60 Aethionema arabicum HOM05D004794 ORTHO05D005875 9.8e-123 444.1 309 77.3
CSS0006530 Camellia sinensis var. sinensis HOM05D004794 ORTHO05D005875 9.8e-123 444.1 359 70.5
Medtr1g109080 Medicago truncatula HOM05D004794 ORTHO05D005875 9.8e-123 444.1 337 69.1
Nn4g24023 Nelumbo nucifera HOM05D004794 ORTHO05D005875 9.8e-123 444.1 361 68.4
arahy.Tifrunner.gnm1.ann1.9SFQ4R Arachis hypogaea HOM05D004794 ORTHO05D005875 1.3e-122 443.7 305 77.4
BolC2t10997H Brassica oleracea HOM05D004794 ORTHO05D005875 1.3e-122 443.7 351 69.8
Sp2g12580 Schrenkiella parvula HOM05D004794 ORTHO05D005875 1.3e-122 443.7 274 83.9
BraA02t08175Z Brassica rapa HOM05D004794 ORTHO05D005875 1.7e-122 443.4 352 70.2
PSO170G3473 Papaver somniferum HOM05D004794 ORTHO05D005875 1.7e-122 443.4 310 78.1
A02p31690 Brassica napus HOM05D004794 ORTHO05D005875 2.2e-122 443.0 352 70.2
Nitab4.5_0000350g0140 Nicotiana tabacum HOM05D004794 ORTHO05D005875 2.2e-122 443.0 357 69.5
Solyc05g008530.3 Solanum lycopersicum HOM05D004794 ORTHO05D005875 2.2e-122 443.0 357 69.5
Ah.03g138420 Amaranthus hybridus HOM05D004794 ORTHO05D005875 2.8e-122 442.6 296 79.1
BraA06t27340Z Brassica rapa HOM05D004794 ORTHO05D005875 2.8e-122 442.6 361 69.3
Carub.0005s0009 Capsella rubella HOM05D004794 ORTHO05D005875 2.8e-122 442.6 354 69.5
AUR62002773 Chenopodium quinoa HOM05D004794 ORTHO05D005875 2.8e-122 442.6 346 71.7
Lalb_Chr06g0165741 Lupinus albus HOM05D004794 ORTHO05D005875 2.8e-122 442.6 314 74.2
BcaC06g34216 Brassica carinata HOM05D004794 ORTHO05D005875 3.7e-122 442.2 358 69.8
TAR622G1294 Trochodendron aralioides HOM05D004794 ORTHO05D005875 3.7e-122 442.2 300 79.0
vmacro01423 Vaccinium macrocarpon HOM05D004794 ORTHO05D005875 3.7e-122 442.2 366 68.9
PGSC0003DMG400030563 Solanum tuberosum HOM05D004794 ORTHO05D005875 4.8e-122 441.8 358 69.3
Sopen05g004370 Solanum pennellii HOM05D004794 ORTHO05D005875 6.3e-122 441.4 357 69.2
BcaB07g30424 Brassica carinata HOM05D004794 ORTHO05D005875 8.3e-122 441.0 352 70.2
Aqoxy5G03876 Aquilegia oxysepala HOM05D004794 ORTHO05D005875 1.1e-121 440.7 302 78.1
Ca_23704_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 1.1e-121 440.7 315 75.6
Ca_30211_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 1.1e-121 440.7 315 75.6
PSO445G0020 Papaver somniferum HOM05D004794 ORTHO05D005875 1.1e-121 440.7 311 77.8
Potri.010G117200 Populus trichocarpa HOM05D004794 ORTHO05D005875 1.4e-121 440.3 363 68.6
Zm00001eb009240 Zea mays HOM05D004794 ORTHO05D005875 1.4e-121 440.3 319 73.7
SGA_v2.0_scaffold376G50295 Striga asiatica HOM05D004794 ORTHO05D005875 1.8e-121 439.9 315 74.0
EL10Ac6g14275 Beta vulgaris HOM05D004794 ORTHO05D005875 2.4e-121 439.5 309 77.0
C07p31580 Brassica napus HOM05D004794 ORTHO05D005875 2.4e-121 439.5 361 68.7
CAN.G1489.14 Capsicum annuum HOM05D004794 ORTHO05D005875 4.1e-121 438.7 320 73.4
BolC7t43697H Brassica oleracea HOM05D004794 ORTHO05D005875 5.4e-121 438.3 361 68.7
Os01g0501700 Oryza sativa ssp. japonica HOM05D004794 ORTHO05D005875 1.6e-120 436.8 317 77.3
HanXRQChr01g0013251 Helianthus annuus HOM05D004794 ORTHO05D005875 2.0e-120 436.4 356 67.4
Oeu029170.1 Olea europaea HOM05D004794 ORTHO05D005875 2.7e-120 436.0 320 71.6
Peaxi162Scf00205g01022 Petunia axillaris HOM05D004794 ORTHO05D005875 3.5e-120 435.6 356 69.9
Haze_00684 Corylus avellana HOM05D004794 ORTHO05D005875 4.5e-120 435.3 363 70.2
SalBow8G5373 Salvia bowleyana HOM05D004794 ORTHO05D005875 4.5e-120 435.3 317 71.9
HPP92_027135 Vanilla planifolia HOM05D004794 ORTHO05D005875 7.7e-120 434.5 297 76.1
Lsat_1_v5_gn_3_54000 Lactuca sativa HOM05D004794 ORTHO05D005875 1.0e-119 434.1 351 68.9
CDE06G2233 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 1.3e-119 433.7 319 72.1
EL10Ac4g08742 Beta vulgaris HOM05D004794 ORTHO05D005875 3.8e-119 432.2 305 73.8
ECA246G3704 Erigeron canadensis HOM05D004794 ORTHO05D005875 3.8e-119 432.2 279 79.6
Sabra10G0086800 Salix brachista HOM05D004794 ORTHO05D005875 5.0e-119 431.8 413 60.3
Sabra10G0088400 Salix brachista HOM05D004794 ORTHO05D005875 5.0e-119 431.8 413 60.3
HPP92_021566 Vanilla planifolia HOM05D004794 ORTHO05D005875 6.5e-119 431.4 297 75.4
Cc11_g09270 Coffea canephora HOM05D004794 ORTHO05D005875 1.1e-118 430.6 362 66.6
Migut.E00392 Erythranthe guttata HOM05D004794 ORTHO05D005875 1.1e-118 430.6 319 72.1
HanXRQChr15g0477711 Helianthus annuus HOM05D004794 ORTHO05D005875 1.1e-118 430.6 354 66.7
Duzib251G0273 Durio zibethinus HOM05D004794 ORTHO05D005875 1.5e-118 430.3 364 67.3
Lj5g0022431 Lotus japonicus HOM05D004794 ORTHO05D005875 3.2e-118 429.1 338 68.9
MBI16_g29821_MAGBIO Magnolia biondii HOM05D004794 ORTHO05D005875 9.4e-118 427.6 269 83.3
MSTRG.13564 Avicennia marina HOM05D004794 ORTHO05D005875 4.7e-117 425.2 324 70.4
DCAR_007276 Daucus carota HOM05D004794 ORTHO05D005875 1.0e-116 424.1 258 82.6
Oeu048392.1 Olea europaea HOM05D004794 ORTHO05D005875 1.8e-116 423.3 329 67.5
CDE07G0253 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 6.8e-116 421.4 252 84.5
Duzib268G0539 Durio zibethinus HOM05D004794 ORTHO05D005875 6.8e-116 421.4 353 68.0
Lj6A750T92 Lonicera japonica HOM05D004794 ORTHO05D005875 1.7e-114 416.8 251 84.5
Migut.L01019 Erythranthe guttata HOM05D004794 ORTHO05D005875 3.7e-114 415.6 308 72.4
SEGI_17562 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 3.7e-114 415.6 347 68.3
COL.COLO4_20120 Corchorus olitorius HOM05D004794 ORTHO05D005875 8.3e-114 414.5 238 89.1
AUR62037257 Chenopodium quinoa HOM05D004794 ORTHO05D005875 6.6e-111 404.8 436 56.9
Lsat_1_v5_gn_4_15760 Lactuca sativa HOM05D004794 ORTHO05D005875 3.3e-110 402.5 353 66.3
Mapoly0010s0061 Marchantia polymorpha HOM05D004794 ORTHO05D005875 4.7e-109 398.7 280 75.0
HPP92_020138 Vanilla planifolia HOM05D004794 ORTHO05D005875 1.0e-108 397.5 312 70.5
Rhsim12G0088300 Rhododendron simsii HOM05D004794 ORTHO05D005875 1.5e-107 393.7 327 67.0
Thhalv10000946m.g Eutrema salsugineum HOM05D004794 ORTHO05D005875 2.0e-107 393.3 352 65.3
Pp3c3_36440 Physcomitrium patens HOM05D004794 ORTHO05D005875 7.5e-107 391.3 258 77.5
AagrBONN_evm.TU.Sc2ySwM_368.2774 Anthoceros agrestis HOM05D004794 ORTHO05D005875 1.7e-106 390.2 272 75.0
SMO119G0095 Selaginella moellendorffii HOM05D004794 ORTHO05D005875 1.1e-105 387.5 250 78.4
SalBow8G4147 Salvia bowleyana HOM05D004794 ORTHO05D005875 2.0e-104 383.3 383 58.0
ECA234G2688 Erigeron canadensis HOM05D004794 ORTHO05D005875 2.7e-104 382.9 298 68.1
Pp3c8_3800 Physcomitrium patens HOM05D004794 ORTHO05D005875 3.5e-104 382.5 264 75.8
HanXRQChr17g0567091 Helianthus annuus HOM05D004794 ORTHO05D005875 1.7e-103 380.2 304 67.8
DCAR_030186 Daucus carota HOM05D004794 ORTHO05D005875 3.0e-103 379.4 225 85.8
TPR.G4856 Trifolium pratense HOM05D004794 ORTHO05D005875 5.2e-100 368.6 292 66.1
CBR_g19219 Chara braunii HOM05D004794 ORTHO05D005875 8.9e-100 367.9 243 76.5
PRCOL_00000588 Prasinoderma coloniale HOM05D004794 ORTHO05D005875 9.2e-97 357.8 282 66.0
MCO02G003 Micromonas commoda HOM05D004794 ORTHO05D005875 1.4e-92 344.0 248 72.2
Zm00001eb399680 Zea mays HOM05D004794 ORTHO05D005875 1.2e-91 340.9 323 60.7
Oeu022847.1 Olea europaea HOM05D004794 ORTHO05D005875 1.1e-86 324.3 254 68.5
Cre03.g145887 Chlamydomonas reinhardtii HOM05D004794 ORTHO05D005875 7.3e-86 321.6 258 64.7
VMungo0720G1627 Vigna mungo HOM05D004794 ORTHO05D005875 7.1e-81 305.1 313 59.1
unitig_8.g3987 Utricularia gibba HOM05D000722 ORTHO05D000590 7.1e-65 251.9 206 68.0
A09p23220 Brassica napus HOM05D004794 ORTHO05D005875 5.8e-59 232.3 155 77.4
BraA09t37925Z Brassica rapa HOM05D004794 ORTHO05D005875 2.9e-58 229.9 155 76.8
BcaC03g16992 Brassica carinata HOM05D004794 ORTHO05D005875 7.9e-56 221.9 147 76.9
BolC2t10985H Brassica oleracea HOM05D004794 ORTHO05D005875 7.9e-56 221.9 147 76.9
Cpa.g.sc65.92 Carica papaya HOM05D004794 ORTHO05D005875 3.9e-47 193.0 108 93.5
SEGI_30482 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 1.5e-35 154.5 102 78.4
SEGI_31512 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 2.6e-35 153.7 99 79.8
SEGI_19547 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 1.4e-33 147.9 185 53.5
C09p29960 Brassica napus HOM05D004794 ORTHO05D039171 1.2e-32 144.8 128 61.7
BcaC04g21603 Brassica carinata HOM05D004794 ORTHO05D039171 1.2e-24 118.2 102 66.7
BolC9t55859H Brassica oleracea HOM05D004794 ORTHO05D005875 9.1e-20 102.1 64 84.4
unitig_8.g3988 Utricularia gibba HOM05D004794 ORTHO05D005875 2.6e-19 100.5 61 82.0


User provided reference genes

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