Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G0854 Fragaria x ananassa HOM05D006658 ORTHO05D008515 1.0e-213 746.5 385 100.0
FvH4_4g14170 Fragaria vesca HOM05D006658 ORTHO05D008515 2.5e-212 741.9 385 99.5
FAN07G2752 Fragaria x ananassa HOM05D006658 ORTHO05D008515 4.6e-198 694.5 416 88.9
RcHm_v2.0_Chr4g0419051 Rosa chinensis HOM05D006658 ORTHO05D008515 6.0e-190 667.5 386 91.2
MD13G1180000 Malus domestica HOM05D006658 ORTHO05D008515 5.5e-167 591.3 388 79.4
Prupe.1G148500 Prunus persica HOM05D006658 ORTHO05D008515 1.5e-164 583.2 387 79.3
Cfa015553 Carpinus fangiana HOM05D006658 ORTHO05D008515 9.7e-148 527.3 391 71.4
Haze_00994 Corylus avellana HOM05D006658 ORTHO05D008515 1.3e-147 526.9 394 70.8
Potri.008G199900 Populus trichocarpa HOM05D006658 ORTHO05D008515 1.4e-146 523.5 395 69.1
CiPaw.02G090200 Carya illinoinensis HOM05D006658 ORTHO05D008515 3.1e-146 522.3 394 70.6
CANSAT78G1897 Cannabis sativa HOM05D006658 ORTHO05D008515 5.9e-145 518.1 385 70.1
QL06p005937 Quercus lobata HOM05D006658 ORTHO05D008515 2.5e-143 512.7 386 71.0
Sabra08G0161000 Salix brachista HOM05D006658 ORTHO05D008515 1.5e-140 503.4 400 67.5
TAR365G0289 Trochodendron aralioides HOM05D006658 ORTHO05D008515 1.7e-139 500.0 390 66.9
Atru.chr4.2671 Acer truncatum HOM05D006658 ORTHO05D008515 2.2e-139 499.6 389 68.1
Manes.15G021400 Manihot esculenta HOM05D006658 ORTHO05D008515 1.2e-137 493.8 373 68.9
arahy.Tifrunner.gnm1.ann1.V9Y9T8 Arachis hypogaea HOM05D006658 ORTHO05D008515 7.7e-137 491.1 385 67.3
Cpa.g.sc16.52 Carica papaya HOM05D006658 ORTHO05D008515 1.3e-136 490.3 389 67.1
Eucgr.E03351 Eucalyptus grandis HOM05D006658 ORTHO05D008515 1.7e-136 490.0 383 67.4
GSVIVG01017866001 Vitis vinifera HOM05D006658 ORTHO05D008515 1.7e-136 490.0 405 65.9
Lj6g0017983 Lotus japonicus HOM05D006658 ORTHO05D008515 1.5e-135 486.9 364 70.1
Ciclev10005116m.g Citrus clementina HOM05D006658 ORTHO05D008515 2.5e-135 486.1 404 65.3
TWI53G0915 Tripterygium wilfordii HOM05D006658 ORTHO05D008515 3.2e-135 485.7 318 76.7
Glyma.15G101900 Glycine max HOM05D006658 ORTHO05D008515 2.1e-134 483.0 373 67.3
Ca_00605_v3 Cicer arietinum L. HOM05D000887 ORTHO05D000908 2.7e-134 482.6 333 72.4
Medtr2g021220 Medicago truncatula HOM05D006658 ORTHO05D008515 2.7e-134 482.6 376 67.8
Rhsim02G0017700 Rhododendron simsii HOM05D006658 ORTHO05D008515 6.1e-134 481.5 382 67.3
MBI17_g29609_MAGBIO Magnolia biondii HOM05D006658 ORTHO05D008515 1.0e-133 480.7 391 66.0
arahy.Tifrunner.gnm1.ann1.Q3CYV3 Arachis hypogaea HOM05D006658 ORTHO05D008515 1.8e-133 479.9 385 66.0
FAN22G2256 Fragaria x ananassa HOM05D006658 ORTHO05D008515 1.8e-133 479.9 256 97.7
VMungo0540G0090 Vigna mungo HOM05D006658 ORTHO05D008515 3.0e-133 479.2 391 65.5
Actinidia00076 Actinidia chinensis HOM05D006658 ORTHO05D008515 6.7e-133 478.0 372 66.4
Phvul.006G155900 Phaseolus vulgaris HOM05D006658 ORTHO05D008515 6.7e-133 478.0 335 72.2
vmacro15292 Vaccinium macrocarpon HOM05D006658 ORTHO05D008515 6.7e-133 478.0 369 67.2
Dinv38362 Davidia involucrata HOM05D006658 ORTHO05D008515 2.0e-132 476.5 382 65.7
PSO170G4721 Papaver somniferum HOM05D006658 ORTHO05D008515 3.7e-131 472.2 318 74.8
MELO3C021391.2 Cucumis melo HOM05D006658 ORTHO05D008515 6.3e-131 471.5 345 68.4
PSO407G0441 Papaver somniferum HOM05D006658 ORTHO05D008515 1.8e-130 469.9 307 76.5
RcHm_v2.0_Chr2g0086241 Rosa chinensis HOM05D006658 ORTHO05D008515 1.8e-130 469.9 314 82.8
Sed0019307 Sechium edule HOM05D006658 ORTHO05D008515 4.1e-130 468.8 345 68.1
Lalb_Chr15g0087271 Lupinus albus HOM05D006658 ORTHO05D008515 1.6e-129 466.8 376 67.8
THA.LOC104820222 Tarenaya hassleriana HOM05D006658 ORTHO05D008515 2.0e-129 466.5 379 62.8
Gorai.006G218300 Gossypium raimondii HOM05D006658 ORTHO05D008515 2.7e-129 466.1 400 63.0
ClCG06G005690 Citrullus lanatus HOM05D006658 ORTHO05D008515 4.5e-129 465.3 364 65.9
TPR.G28916 Trifolium pratense HOM05D000887 ORTHO05D000908 7.7e-129 464.5 385 64.7
CsaV3_6G005460 Cucumis sativus L. HOM05D006658 ORTHO05D008515 1.7e-128 463.4 340 68.8
PGR065G0004 Punica granatum HOM05D006658 ORTHO05D008515 2.2e-128 463.0 389 63.0
Thecc.04G218900 Theobroma cacao HOM05D006658 ORTHO05D008515 1.5e-127 460.3 391 63.4
Lsat_1_v5_gn_5_165480 Lactuca sativa HOM05D006658 ORTHO05D008515 7.2e-127 458.0 359 64.1
Aqoxy2G03225 Aquilegia oxysepala HOM05D006658 ORTHO05D008515 9.4e-127 457.6 335 69.6
CARHR097540 Cardamine hirsuta HOM05D006658 ORTHO05D008515 1.8e-125 453.4 335 68.1
Carub.0003s2162 Capsella rubella HOM05D006658 ORTHO05D008515 1.5e-124 450.3 367 63.5
Sp3g19610 Schrenkiella parvula HOM05D006658 ORTHO05D008515 1.7e-123 446.8 335 67.2
AT3G21580 Arabidopsis thaliana HOM05D006658 ORTHO05D008515 6.3e-123 444.9 376 62.5
BcaB04g19174 Brassica carinata HOM05D006658 ORTHO05D008515 6.3e-123 444.9 387 60.2
AL3G35700 Arabidopsis lyrata HOM05D006658 ORTHO05D008515 8.3e-123 444.5 378 62.4
Thhalv10020897m.g Eutrema salsugineum HOM05D006658 ORTHO05D008515 1.8e-122 443.4 335 66.9
Sc13g0003830 Simmondsia chinensis HOM05D006658 ORTHO05D008515 1.8e-122 443.4 379 62.3
Cc03_g02920 Coffea canephora HOM05D006658 ORTHO05D008515 2.4e-122 443.0 362 64.1
BcaC01g03498 Brassica carinata HOM05D006658 ORTHO05D008515 3.1e-122 442.6 376 62.2
A03p42320 Brassica napus HOM05D006658 ORTHO05D008515 4.1e-122 442.2 376 62.0
BraA03t13384Z Brassica rapa HOM05D006658 ORTHO05D008515 4.1e-122 442.2 376 62.0
HanXRQChr12g0359491 Helianthus annuus HOM05D006658 ORTHO05D008515 2.7e-121 439.5 372 61.3
Aa31sc174G10 Aethionema arabicum HOM05D006658 ORTHO05D008515 4.5e-121 438.7 375 62.1
C03p51780 Brassica napus HOM05D006658 ORTHO05D008515 1.5e-119 433.7 377 61.0
BolC3t17462H Brassica oleracea HOM05D006658 ORTHO05D008515 1.5e-119 433.7 376 61.4
Os05g0400600 Oryza sativa ssp. japonica HOM05D006658 ORTHO05D008515 1.5e-119 433.7 323 67.2
COL.COLO4_21620 Corchorus olitorius HOM05D006658 ORTHO05D008515 2.0e-116 423.3 371 62.5
Zm00001eb346810 Zea mays HOM05D006658 ORTHO05D008515 2.6e-116 422.9 326 65.0
DCAR_027140 Daucus carota HOM05D006658 ORTHO05D008515 4.4e-116 422.2 357 62.2
Sopen01g032090 Solanum pennellii HOM05D006658 ORTHO05D008515 9.8e-116 421.0 377 58.4
Solyc01g080300.4 Solanum lycopersicum HOM05D006658 ORTHO05D008515 2.8e-115 419.5 377 58.6
Duzib212G0844 Durio zibethinus HOM05D006658 ORTHO05D008515 4.9e-115 418.7 349 65.6
HPP92_001401 Vanilla planifolia HOM05D006658 ORTHO05D008515 1.1e-114 417.5 332 63.6
PGSC0003DMG400004353 Solanum tuberosum HOM05D006658 ORTHO05D008515 1.8e-114 416.8 377 58.4
Psat5g176560 Pisum sativum HOM05D006658 ORTHO05D008515 5.4e-114 415.2 406 57.4
CAN.G522.10 Capsicum annuum HOM05D006658 ORTHO05D008515 7.0e-114 414.8 381 58.8
Migut.N00139 Erythranthe guttata HOM05D006658 ORTHO05D008515 2.7e-113 412.9 377 57.0
Peaxi162Scf00095g00723 Petunia axillaris HOM05D006658 ORTHO05D008515 1.7e-112 410.2 361 61.5
ATR0626G018 Amborella trichopoda HOM05D006658 ORTHO05D007095 1.1e-111 407.5 292 69.2
MSTRG.24762 Avicennia marina HOM05D006658 ORTHO05D008515 1.5e-111 407.1 390 56.2
SalBow5G3198 Salvia bowleyana HOM05D006658 ORTHO05D008515 1.5e-111 407.1 309 64.7
SGA_v2.0_scaffold107G30765 Striga asiatica HOM05D006658 ORTHO05D008515 3.3e-111 406.0 370 58.4
Nitab4.5_0003070g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008515 9.5e-111 404.4 406 55.4
Nn4g26153 Nelumbo nucifera HOM05D006658 ORTHO05D008515 2.1e-110 403.3 372 58.1
EL10Ac4g08937 Beta vulgaris HOM05D006658 ORTHO05D008515 6.1e-110 401.7 330 63.9
Gohir.D09G194900 Gossypium hirsutum HOM05D006658 ORTHO05D008515 3.0e-109 399.4 400 56.8
SEGI_40702 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 4.0e-109 399.1 331 59.5
Gohir.A09G200700 Gossypium hirsutum HOM05D006658 ORTHO05D008515 3.7e-107 392.5 400 56.2
PGR004G0022 Punica granatum HOM05D006658 ORTHO05D008515 5.9e-105 385.2 330 63.0
CDE02G1914 Ceratophyllum demersum HOM05D006658 ORTHO05D008515 5.8e-100 368.6 391 52.9
CSS0022396 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 3.7e-99 365.9 252 71.0
RcHm_v2.0_Chr5g0064291 Rosa chinensis HOM05D006658 ORTHO05D008515 1.6e-97 360.5 198 95.5
Mapoly0015s0173 Marchantia polymorpha HOM05D006658 ORTHO05D008515 1.2e-92 344.4 304 55.3
ECA234G3592 Erigeron canadensis HOM05D006658 ORTHO05D008515 8.3e-91 338.2 250 68.4
Pp3c16_5660 Physcomitrium patens HOM05D006658 ORTHO05D008515 1.4e-90 337.4 287 56.4
Glyma.13G210900 Glycine max HOM05D006658 ORTHO05D008515 5.4e-90 335.5 305 61.6
SMO361G0230 Selaginella moellendorffii HOM05D006658 ORTHO05D008515 3.9e-88 329.3 343 49.9
AUR62004779 Chenopodium quinoa HOM05D006658 ORTHO05D008515 5.6e-87 325.5 357 52.1
Ah.06g191650 Amaranthus hybridus HOM05D006658 ORTHO05D008515 1.6e-86 323.9 296 60.1
RcHm_v2.0_Chr5g0045591 Rosa chinensis HOM05D006658 ORTHO05D008515 2.0e-84 317.0 187 90.4
unitig_61.g26008 Utricularia gibba HOM05D006658 ORTHO05D008515 3.2e-82 309.7 309 51.8
AagrBONN_evm.TU.Sc2ySwM_228.2900 Anthoceros agrestis HOM05D006670 ORTHO05D008715 6.0e-81 305.4 309 50.5
Lj3A803G20 Lonicera japonica HOM05D006658 ORTHO05D008515 6.9e-77 292.0 292 54.1
Psat1g186040 Pisum sativum HOM05D006658 ORTHO05D008515 4.4e-76 289.3 188 77.1
AUR62003399 Chenopodium quinoa HOM05D006658 ORTHO05D008515 4.6e-73 279.3 271 57.6
CDE09G1086 Ceratophyllum demersum HOM05D002356 ORTHO05D002546 2.4e-69 266.9 254 55.9
CSS0004357 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 1.1e-66 258.1 223 59.2
Manes.07G121800 Manihot esculenta HOM05D006658 ORTHO05D008515 3.0e-64 250.0 159 79.9
Hund26050 Selenicereus undatus HOM05D006658 ORTHO05D008515 8.7e-64 248.4 253 54.9
Nn1g02127 Nelumbo nucifera HOM05D006658 ORTHO05D008515 4.5e-60 236.1 199 63.8
Cre12.g533950 Chlamydomonas reinhardtii HOM05D006658 ORTHO05D008515 2.8e-54 216.9 290 40.3
Nitab4.5_0000059g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008979 7.1e-50 202.2 313 44.7
PRCOL_00004089 Prasinoderma coloniale HOM05D006658 ORTHO05D008515 3.7e-46 189.9 277 40.4
SEGI_22040 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 5.3e-45 186.0 137 67.2
MCO01G250 Micromonas commoda HOM05D006658 ORTHO05D008515 2.6e-44 183.7 284 36.6
Psat2g070960 Pisum sativum HOM05D006658 ORTHO05D008515 3.3e-31 140.2 240 41.2
HPP92_001340 Vanilla planifolia HOM05D006658 ORTHO05D008515 6.3e-30 136.0 122 59.0
Oeu023652.1 Olea europaea HOM05D006658 ORTHO05D008515 1.5e-28 131.3 226 40.3
Peaxi162Scf00095g00724 Petunia axillaris HOM05D006658 ORTHO05D008515 2.6e-28 130.6 205 40.5
Actinidia32371 Actinidia chinensis HOM05D006658 ORTHO05D008515 8.0e-25 119.0 83 75.9
Actinidia08452 Actinidia chinensis HOM05D006658 ORTHO05D008515 2.3e-24 117.5 83 73.5
HanXRQChr09g0256171 Helianthus annuus HOM05D006658 ORTHO05D008515 3.5e-12 77.0 62 59.7
Oeu037664.1 Olea europaea HOM05D006658 ORTHO05D008515 5.5e-10 69.7 69 52.2
HanXRQChr04g0123631 Helianthus annuus HOM05D034347 ORTHO05D227534 8.8e-08 62.4 46 69.6


User provided reference genes

Program Settings