Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_4g25530 Fragaria vesca HOM05D006540 ORTHO05D008202 1.6e-168 596.3 358 100.0
FAN12G0822 Fragaria x ananassa HOM05D006540 ORTHO05D008202 1.6e-168 596.3 358 100.0
FAN22G2305 Fragaria x ananassa HOM05D006540 ORTHO05D008202 1.9e-166 589.3 358 98.9
FAN17G1845 Fragaria x ananassa HOM05D006540 ORTHO05D008202 2.1e-165 585.9 358 98.6
FAN07G1259 Fragaria x ananassa HOM05D006540 ORTHO05D008202 9.9e-163 577.0 358 95.8
RcHm_v2.0_Chr4g0432921 Rosa chinensis HOM05D006540 ORTHO05D008202 2.0e-155 552.7 361 88.9
MD13G1101900 Malus domestica HOM05D006540 ORTHO05D008202 1.3e-141 506.9 358 80.4
MD16G1102400 Malus domestica HOM05D006540 ORTHO05D008202 3.1e-140 502.3 358 79.6
Prupe.1G243900 Prunus persica HOM05D006540 ORTHO05D008202 1.0e-135 487.3 358 80.2
CiPaw.05G182700 Carya illinoinensis HOM05D006540 ORTHO05D008202 8.2e-125 451.1 356 69.1
ClCG05G025710 Citrullus lanatus HOM05D006540 ORTHO05D008202 2.7e-120 436.0 359 67.1
Cfa009208 Carpinus fangiana HOM05D006540 ORTHO05D008202 4.7e-120 435.3 356 66.9
Atru.chr11.2104 Acer truncatum HOM05D006540 ORTHO05D008202 9.7e-118 427.6 358 64.2
QL03p058139 Quercus lobata HOM05D006540 ORTHO05D008202 2.9e-114 416.0 412 64.1
Dinv24788 Davidia involucrata HOM05D006540 ORTHO05D008202 3.8e-114 415.6 359 69.9
Haze_12245 Corylus avellana HOM05D006540 ORTHO05D008202 2.1e-112 409.8 375 65.1
Cpa.g.sc33.16 Carica papaya HOM05D006540 ORTHO05D008202 3.3e-110 402.5 362 64.4
PGR102G2745 Punica granatum HOM05D006540 ORTHO05D008202 4.4e-110 402.1 358 67.0
Duzib268G1404 Durio zibethinus HOM05D006540 ORTHO05D008202 5.7e-110 401.7 361 64.0
Migut.K00595 Erythranthe guttata HOM05D006540 ORTHO05D008202 6.3e-109 398.3 363 59.2
TAR622G1382 Trochodendron aralioides HOM05D006540 ORTHO05D008202 1.4e-108 397.1 360 65.0
SalBow2G2200 Salvia bowleyana HOM05D006540 ORTHO05D008202 1.8e-108 396.7 366 59.0
Eucgr.B03288 Eucalyptus grandis HOM05D006540 ORTHO05D008202 4.1e-108 395.6 363 65.6
Phvul.003G064400 Phaseolus vulgaris HOM05D006540 ORTHO05D008202 2.7e-107 392.9 356 61.2
Ciclev10032003m.g Citrus clementina HOM05D006540 ORTHO05D008202 7.7e-107 391.3 357 63.0
Manes.13G024900 Manihot esculenta HOM05D006540 ORTHO05D008202 2.9e-106 389.4 356 62.6
MSTRG.568 Avicennia marina HOM05D006540 ORTHO05D008202 3.8e-106 389.0 361 59.6
Gorai.002G186600 Gossypium raimondii HOM05D006540 ORTHO05D008202 8.5e-106 387.9 361 64.3
Glyma.17G134500 Glycine max HOM05D006540 ORTHO05D008202 3.2e-105 386.0 358 63.4
CANSAT35G0572 Cannabis sativa HOM05D006540 ORTHO05D008202 7.2e-105 384.8 363 65.0
Gohir.D01G150500 Gossypium hirsutum HOM05D006540 ORTHO05D008202 9.4e-105 384.4 361 64.0
Lj4g0023216 Lotus japonicus HOM05D006540 ORTHO05D008202 1.2e-104 384.0 357 60.8
TWI18G0987 Tripterygium wilfordii HOM05D006540 ORTHO05D008202 1.6e-104 383.6 359 64.1
Hma1.2p1_0223F.1_g093990 Hydrangea macrophylla HOM05D006540 ORTHO05D008202 3.6e-104 382.5 389 58.1
Cc11_g15700 Coffea canephora HOM05D006540 ORTHO05D008202 4.7e-104 382.1 369 62.6
Aa31LG2G5960 Aethionema arabicum HOM05D006540 ORTHO05D008202 1.8e-103 380.2 364 57.4
Actinidia37429 Actinidia chinensis HOM05D006540 ORTHO05D008202 1.5e-102 377.1 360 63.3
vmacro16198 Vaccinium macrocarpon HOM05D006540 ORTHO05D008202 1.5e-102 377.1 361 57.9
arahy.Tifrunner.gnm1.ann1.LD9JWE Arachis hypogaea HOM05D006540 ORTHO05D008202 4.4e-102 375.6 372 61.0
arahy.Tifrunner.gnm1.ann1.NX3C69 Arachis hypogaea HOM05D006540 ORTHO05D008202 4.4e-102 375.6 372 61.0
BcaC06g33900 Brassica carinata HOM05D006540 ORTHO05D008202 4.4e-102 375.6 357 57.7
Oeu059907.1 Olea europaea HOM05D006540 ORTHO05D008202 7.5e-102 374.8 372 57.3
CARHR147570 Cardamine hirsuta HOM05D006540 ORTHO05D008202 3.7e-101 372.5 363 59.8
Sp2g15690 Schrenkiella parvula HOM05D006540 ORTHO05D008202 8.3e-101 371.3 364 58.8
Thhalv10004491m.g Eutrema salsugineum HOM05D006540 ORTHO05D008202 1.1e-100 370.9 365 57.3
A06p41910 Brassica napus HOM05D006540 ORTHO05D008202 2.4e-100 369.8 361 58.4
BraA06t27110Z Brassica rapa HOM05D006540 ORTHO05D008202 2.4e-100 369.8 361 58.4
C07p35560 Brassica napus HOM05D006540 ORTHO05D008202 4.1e-100 369.0 357 56.6
BolC7t44080H Brassica oleracea HOM05D006540 ORTHO05D008202 4.1e-100 369.0 357 56.6
AL5G15370 Arabidopsis lyrata HOM05D006540 ORTHO05D008202 1.6e-99 367.1 361 59.3
AT3G26580 Arabidopsis thaliana HOM05D006540 ORTHO05D008202 3.5e-99 365.9 362 58.6
Lj6A811T79 Lonicera japonica HOM05D006540 ORTHO05D008202 1.0e-98 364.4 357 60.5
PGSC0003DMG400018605 Solanum tuberosum HOM05D006540 ORTHO05D008202 1.0e-98 364.4 368 59.8
Thecc.02G259400 Theobroma cacao HOM05D006540 ORTHO05D008202 2.3e-98 363.2 360 63.1
Sabra13G0070200 Salix brachista HOM05D006540 ORTHO05D008202 5.5e-97 358.6 293 68.9
Actinidia15092 Actinidia chinensis HOM05D006540 ORTHO05D008202 9.5e-97 357.8 360 61.4
THA.LOC104825662 Tarenaya hassleriana HOM05D006540 ORTHO05D008202 9.5e-97 357.8 361 58.7
Sc04g0009450 Simmondsia chinensis HOM05D006540 ORTHO05D008202 1.6e-96 357.1 360 64.7
vmacro01127 Vaccinium macrocarpon HOM05D006540 ORTHO05D008202 2.8e-96 356.3 360 58.9
Rhsim12G0110600 Rhododendron simsii HOM05D006540 ORTHO05D008202 4.7e-96 355.5 365 59.7
Potri.013G090000 Populus trichocarpa HOM05D006540 ORTHO05D008202 6.1e-96 355.1 292 68.8
Duzib248G0112 Durio zibethinus HOM05D006540 ORTHO05D008202 8.0e-96 354.8 363 60.9
Nitab4.5_0000007g0060 Nicotiana tabacum HOM05D006540 ORTHO05D008202 1.4e-95 354.0 366 57.1
COL.COLO4_24263 Corchorus olitorius HOM05D006540 ORTHO05D008202 3.0e-95 352.8 357 57.1
Aqoxy3G01202 Aquilegia oxysepala HOM05D006540 ORTHO05D008202 1.5e-94 350.5 358 58.4
Lalb_Chr05g0228421 Lupinus albus HOM05D006540 ORTHO05D008202 1.5e-94 350.5 356 59.0
Peaxi162Scf00128g00138 Petunia axillaris HOM05D006540 ORTHO05D008202 1.5e-94 350.5 372 58.1
Gohir.A01G159600 Gossypium hirsutum HOM05D006540 ORTHO05D008202 5.7e-94 348.6 361 60.4
BcaC06g31063 Brassica carinata HOM05D006540 ORTHO05D008202 9.8e-94 347.8 362 56.4
Nitab4.5_0003628g0010 Nicotiana tabacum HOM05D006540 ORTHO05D008202 9.8e-94 347.8 366 57.1
Ca_22583_v3 Cicer arietinum L. HOM05D006540 ORTHO05D008202 3.7e-93 345.9 357 60.5
Medtr8g069450 Medicago truncatula HOM05D006540 ORTHO05D008202 3.1e-92 342.8 360 56.7
Sopen05g008320 Solanum pennellii HOM05D006540 ORTHO05D008202 9.2e-92 341.3 366 57.4
Carub.0005s0457 Capsella rubella HOM05D006540 ORTHO05D008202 1.6e-91 340.5 362 56.1
DCAR_024432 Daucus carota HOM05D006540 ORTHO05D008202 3.5e-91 339.3 336 58.0
Psat4g116680 Pisum sativum HOM05D006540 ORTHO05D008202 1.7e-90 337.0 365 56.7
CAN.G832.5 Capsicum annuum HOM05D006540 ORTHO05D008202 7.3e-89 331.6 368 56.5
CSS0000303 Camellia sinensis var. sinensis HOM05D006540 ORTHO05D008202 4.7e-88 328.9 369 57.5
EL10Ac6g13801 Beta vulgaris HOM05D006540 ORTHO05D008202 8.0e-88 328.2 360 55.0
Ah.03g133040 Amaranthus hybridus HOM05D006540 ORTHO05D008202 1.7e-85 320.5 245 67.3
CDE02G2769 Ceratophyllum demersum HOM05D006540 ORTHO05D008202 2.2e-85 320.1 243 66.3
ATR0686G190 Amborella trichopoda HOM05D006540 ORTHO05D008202 2.9e-85 319.7 284 60.9
ECA233G5619 Erigeron canadensis HOM05D006540 ORTHO05D008202 3.7e-85 319.3 254 67.3
GSVIVG01004073001 Vitis vinifera HOM05D006540 ORTHO05D008202 3.7e-85 319.3 183 82.5
CDE09G1037 Ceratophyllum demersum HOM05D006540 ORTHO05D008202 6.4e-85 318.5 356 52.8
Nn4g22628 Nelumbo nucifera HOM05D006540 ORTHO05D008202 8.3e-85 318.2 182 82.4
Lsat_1_v5_gn_8_152220 Lactuca sativa HOM05D006540 ORTHO05D008202 1.8e-84 317.0 368 56.5
unitig_21.g20872 Utricularia gibba HOM05D006540 ORTHO05D008202 4.6e-83 312.4 363 50.7
PSO017G4849 Papaver somniferum HOM05D006540 ORTHO05D008202 7.8e-83 311.6 380 49.7
Rhsim12G0041000 Rhododendron simsii HOM05D006540 ORTHO05D008202 1.9e-81 307.0 439 48.5
HanXRQChr08g0208131 Helianthus annuus HOM05D006540 ORTHO05D008202 6.2e-80 302.0 370 54.9
AUR62024282 Chenopodium quinoa HOM05D006540 ORTHO05D008202 8.0e-80 301.6 208 71.6
MBI10_g13027_MAGBIO Magnolia biondii HOM05D006540 ORTHO05D008202 1.2e-78 297.7 393 53.7
AUR62005459 Chenopodium quinoa HOM05D006540 ORTHO05D008202 2.2e-77 293.5 228 66.2
PSO478G4529 Papaver somniferum HOM05D006540 ORTHO05D008202 2.4e-76 290.0 359 50.1
VMungo0251G1250 Vigna mungo HOM05D006540 ORTHO05D008202 4.6e-75 285.8 290 58.6
Sed0005489 Sechium edule HOM05D006540 ORTHO05D008202 1.3e-74 284.3 289 62.3
TPR.G17765 Trifolium pratense HOM05D006540 ORTHO05D008202 7.3e-73 278.5 332 56.0
MELO3C011955.2 Cucumis melo HOM05D006540 ORTHO05D008202 4.4e-70 269.2 295 57.3
CsaV3_5G031170 Cucumis sativus L. HOM05D006540 ORTHO05D008202 9.9e-70 268.1 295 56.9
HPP92_002022 Vanilla planifolia HOM05D006540 ORTHO05D008202 1.7e-69 267.3 247 57.5
BcaB01g00564 Brassica carinata HOM05D006540 ORTHO05D008202 5.1e-66 255.8 234 59.4
Zm00001eb096140 Zea mays HOM05D006540 ORTHO05D008202 8.4e-61 238.4 250 56.0
Os03g0428800 Oryza sativa ssp. japonica HOM05D006540 ORTHO05D008202 1.2e-59 234.6 185 62.7
TAR374G0845 Trochodendron aralioides HOM05D006540 ORTHO05D008202 7.8e-59 231.9 288 56.6
SEGI_37038 Sequoiadendron giganteum HOM05D006540 ORTHO05D008202 7.6e-54 215.3 175 58.3
Mapoly0037s0067 Marchantia polymorpha HOM05D006540 ORTHO05D008202 3.5e-51 206.5 300 45.3
AagrBONN_evm.TU.Sc2ySwM_340.367 Anthoceros agrestis HOM05D006540 ORTHO05D008202 4.6e-51 206.1 247 46.2
SMO347G0417 Selaginella moellendorffii HOM05D006540 ORTHO05D008202 8.7e-50 201.8 249 49.0
Pp3c27_6670 Physcomitrium patens HOM05D006540 ORTHO05D008202 8.4e-45 185.3 185 48.1
BcaC06g33898 Brassica carinata HOM05D006540 ORTHO05D008202 6.3e-24 115.9 80 63.8
Cre12.g528050 Chlamydomonas reinhardtii HOM05D006540 ORTHO05D008202 2.2e-21 107.5 112 47.3
Oeu029879.1 Olea europaea HOM05D006540 ORTHO05D008202 1.6e-19 101.3 74 62.2
CBR_g8379 Chara braunii HOM05D006540 ORTHO05D008202 5.1e-18 96.3 133 39.8
MCO07G599 Micromonas commoda HOM05D006540 ORTHO05D008202 1.3e-16 91.7 153 35.9
RcHm_v2.0_Chr5g0067811 Rosa chinensis HOM05D006540 ORTHO05D008202 3.7e-16 90.1 48 89.6
PRCOL_00004949 Prasinoderma coloniale HOM05D006540 ORTHO05D008202 1.1e-12 78.6 233 29.6
QL04p066147 Quercus lobata HOM05D006540 ORTHO05D008202 1.4e-10 71.6 38 89.5
unitig_744.g24293 Utricularia gibba HOM05D006540 ORTHO05D008202 1.1e-09 68.6 50 58.0
TAR625G0150 Trochodendron aralioides HOM05D006540 ORTHO05D008202 5.3e-07 59.7 106 40.6
Solyc05g013480.4 Solanum lycopersicum HOM05D006540 ORTHO05D008202 7.7e-06 55.8 205 37.1


User provided reference genes

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