Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G0803 Fragaria x ananassa HOM05D006846 ORTHO05D008473 1.8e-96 355.9 182 100.0
FvH4_4g21260 Fragaria vesca HOM05D006846 ORTHO05D008473 1.2e-76 290.0 182 84.6
FAN07G1325 Fragaria x ananassa HOM05D006846 ORTHO05D008473 1.6e-76 289.7 182 84.6
RcHm_v2.0_Chr4g0426881 Rosa chinensis HOM05D006846 ORTHO05D008473 1.6e-68 263.1 185 75.7
Prupe.1G108100 Prunus persica HOM05D006846 ORTHO05D008473 1.1e-53 213.8 185 63.8
MD13G1143600 Malus domestica HOM05D006846 ORTHO05D008473 3.6e-52 208.8 184 60.3
Cfa015953 Carpinus fangiana HOM05D006846 ORTHO05D008473 1.9e-45 186.4 187 54.0
Eucgr.H04110 Eucalyptus grandis HOM05D006846 ORTHO05D008473 4.7e-44 181.8 171 59.1
MELO3C003207.2 Cucumis melo HOM05D006846 ORTHO05D008473 1.4e-43 180.3 173 58.4
QL06p041421 Quercus lobata HOM05D006846 ORTHO05D008473 2.3e-43 179.5 181 54.7
Sabra08G0075400 Salix brachista HOM05D006846 ORTHO05D008473 7.5e-42 174.5 182 54.9
GSVIVG01017604001 Vitis vinifera HOM05D006846 ORTHO05D008473 9.8e-42 174.1 152 63.2
GSVIVG01017661001 Vitis vinifera HOM05D006846 ORTHO05D008473 9.8e-42 174.1 152 63.2
Duzib212G0339 Durio zibethinus HOM05D006846 ORTHO05D008473 2.9e-41 172.6 153 62.7
CsaV3_4G025810 Cucumis sativus L. HOM05D006846 ORTHO05D008473 6.4e-41 171.4 171 56.1
Thecc.04G310600 Theobroma cacao HOM05D006846 ORTHO05D008473 1.1e-40 170.6 171 56.1
CiPaw.01G161800 Carya illinoinensis HOM05D006846 ORTHO05D008473 1.4e-40 170.2 193 50.8
Nitab4.5_0007368g0030 Nicotiana tabacum HOM05D006846 ORTHO05D008473 1.9e-40 169.9 150 60.0
Actinidia18502 Actinidia chinensis HOM05D006846 ORTHO05D008473 2.4e-40 169.5 154 60.4
Migut.H02019 Erythranthe guttata HOM05D006846 ORTHO05D008473 2.4e-40 169.5 147 62.6
Gohir.D09G242700 Gossypium hirsutum HOM05D006846 ORTHO05D008473 3.2e-40 169.1 168 57.1
Gorai.006G266400 Gossypium raimondii HOM05D006846 ORTHO05D008473 3.2e-40 169.1 168 57.1
Hund16859 Selenicereus undatus HOM05D006846 ORTHO05D008473 3.2e-40 169.1 147 61.2
Manes.03G210800 Manihot esculenta HOM05D006846 ORTHO05D008473 5.4e-40 168.3 165 58.8
Nitab4.5_0007474g0050 Nicotiana tabacum HOM05D006846 ORTHO05D008473 7.1e-40 167.9 148 60.1
Lj6A699T67 Lonicera japonica HOM05D006846 ORTHO05D008473 1.2e-39 167.2 150 60.7
PSO339G5299 Papaver somniferum HOM05D006846 ORTHO05D008473 3.5e-39 165.6 165 55.2
PGR004G1594 Punica granatum HOM05D006846 ORTHO05D008473 4.6e-39 165.2 179 52.5
PGR033G0007 Punica granatum HOM05D006846 ORTHO05D008473 4.6e-39 165.2 179 52.5
Sed0003831 Sechium edule HOM05D006846 ORTHO05D008473 6.0e-39 164.9 173 54.3
Potri.008G099700 Populus trichocarpa HOM05D006846 ORTHO05D008473 7.8e-39 164.5 182 52.2
MSTRG.14213 Avicennia marina HOM05D006846 ORTHO05D008473 1.3e-38 163.7 159 57.9
Carub.0001s3726 Capsella rubella HOM05D003832 ORTHO05D004365 1.3e-38 163.7 172 54.7
Carub.0005s0005 Capsella rubella HOM05D006846 ORTHO05D008473 1.3e-38 163.7 168 56.0
Rhsim04G0247300 Rhododendron simsii HOM05D006846 ORTHO05D008473 1.3e-38 163.7 202 49.0
Hma1.2p1_0013F.1_g007970 Hydrangea macrophylla HOM05D006846 ORTHO05D008473 1.7e-38 163.3 142 62.0
Dinv29523 Davidia involucrata HOM05D006846 ORTHO05D008473 5.1e-38 161.8 132 68.2
Sp3g23740 Schrenkiella parvula HOM05D006846 ORTHO05D008473 5.1e-38 161.8 138 63.0
Medtr2g046100 Medicago truncatula HOM05D006846 ORTHO05D008473 8.6e-38 161.0 175 52.6
Aqoxy1G00358 Aquilegia oxysepala HOM05D006846 ORTHO05D008473 1.1e-37 160.6 160 56.2
Phvul.009G219800 Phaseolus vulgaris HOM05D006846 ORTHO05D008473 1.1e-37 160.6 175 51.4
AL1G54740 Arabidopsis lyrata HOM05D006846 ORTHO05D008473 1.5e-37 160.2 149 57.7
Sopen06g018550 Solanum pennellii HOM05D006846 ORTHO05D008473 1.9e-37 159.8 148 58.8
Thhalv10012405m.g Eutrema salsugineum HOM05D006846 ORTHO05D008473 2.5e-37 159.5 144 59.7
Os12g0182800 Oryza sativa ssp. japonica HOM05D006846 ORTHO05D008473 2.5e-37 159.5 157 53.5
Peaxi162Scf00579g00010 Petunia axillaris HOM05D006846 ORTHO05D008473 2.5e-37 159.5 150 56.0
AT1G48170 Arabidopsis thaliana HOM05D006846 ORTHO05D008473 5.6e-37 158.3 147 57.8
PSO384G1587 Papaver somniferum HOM05D006846 ORTHO05D008473 5.6e-37 158.3 150 58.0
AUR62019042 Chenopodium quinoa HOM05D006846 ORTHO05D008473 7.3e-37 157.9 146 56.8
Solyc06g053470.3 Solanum lycopersicum HOM05D006846 ORTHO05D008473 7.3e-37 157.9 180 51.1
PGSC0003DMG400016299 Solanum tuberosum HOM05D006846 ORTHO05D008473 7.3e-37 157.9 180 51.1
BcaC08g43012 Brassica carinata HOM05D006846 ORTHO05D008473 1.2e-36 157.1 144 59.7
C06p02670 Brassica napus HOM05D006846 ORTHO05D008473 1.2e-36 157.1 144 59.7
Sc23g0000700 Simmondsia chinensis HOM05D006846 ORTHO05D008473 1.2e-36 157.1 145 56.6
vmacro08003 Vaccinium macrocarpon HOM05D006846 ORTHO05D008473 1.2e-36 157.1 208 46.6
BolC6t35393H Brassica oleracea HOM05D006846 ORTHO05D008473 1.6e-36 156.8 144 59.0
SGA_v2.0_scaffold127G34033 Striga asiatica HOM05D006846 ORTHO05D008473 1.6e-36 156.8 148 56.1
VMungo1309G3101 Vigna mungo HOM05D006846 ORTHO05D008473 1.6e-36 156.8 175 50.9
Psat1g017720 Pisum sativum HOM05D006846 ORTHO05D008473 2.8e-36 156.0 160 53.8
BcaB07g33786 Brassica carinata HOM05D006846 ORTHO05D008473 3.6e-36 155.6 167 55.1
A06p04640 Brassica napus HOM05D006846 ORTHO05D008473 3.6e-36 155.6 144 58.3
BraA06t23668Z Brassica rapa HOM05D006846 ORTHO05D008473 3.6e-36 155.6 144 58.3
AUR62027881 Chenopodium quinoa HOM05D006846 ORTHO05D008473 3.6e-36 155.6 146 56.8
CARHR037810 Cardamine hirsuta HOM05D006846 ORTHO05D008473 4.7e-36 155.2 146 57.5
CARHR290870 Cardamine hirsuta HOM05D006846 ORTHO05D008473 4.7e-36 155.2 146 57.5
CDE12G0609 Ceratophyllum demersum HOM05D006846 ORTHO05D008473 4.7e-36 155.2 144 57.6
Lj6g0016026 Lotus japonicus HOM05D006846 ORTHO05D008473 4.7e-36 155.2 144 54.9
MBI11_g10320_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 6.2e-36 154.8 145 57.9
Ciclev10007018m.g Citrus clementina HOM05D006846 ORTHO05D008473 8.1e-36 154.5 184 50.5
THA.LOC104821808 Tarenaya hassleriana HOM05D006846 ORTHO05D008473 1.4e-35 153.7 143 56.6
EL10Ac1g01060 Beta vulgaris HOM05D006846 ORTHO05D008473 3.1e-35 152.5 147 55.8
CAN.G136.4 Capsicum annuum HOM05D006846 ORTHO05D008473 3.1e-35 152.5 150 56.0
MD16G1146600 Malus domestica HOM05D006846 ORTHO05D008473 3.1e-35 152.5 188 52.1
SGA_v2.0_scaffold127G34034 Striga asiatica HOM05D006846 ORTHO05D008473 8.9e-35 151.0 150 53.3
CANSAT01G2167 Cannabis sativa HOM05D006846 ORTHO05D008473 1.5e-34 150.2 174 50.0
Zm00001eb359370 Zea mays HOM05D006846 ORTHO05D008473 2.0e-34 149.8 156 51.9
Lalb_Chr07g0181811 Lupinus albus HOM05D006846 ORTHO05D008473 4.4e-34 148.7 141 56.0
Glyma.15G188800 Glycine max HOM05D006846 ORTHO05D008473 7.6e-34 147.9 175 48.6
Aa31LG10G5560 Aethionema arabicum HOM05D006846 ORTHO05D008473 9.9e-34 147.5 162 54.3
SGA_v2.0_scaffold64G22040 Striga asiatica HOM05D006846 ORTHO05D008473 1.3e-33 147.1 169 49.1
arahy.Tifrunner.gnm1.ann1.BIT0EB Arachis hypogaea HOM05D006846 ORTHO05D008473 1.7e-33 146.7 135 57.0
SEGI_09291 Sequoiadendron giganteum HOM05D006846 ORTHO05D008473 2.2e-33 146.4 158 54.4
Ca_02363_v3 Cicer arietinum L. HOM05D006846 ORTHO05D008473 2.9e-33 146.0 144 54.9
Haze_00535 Corylus avellana HOM05D006846 ORTHO05D008473 5.4e-32 141.7 187 47.1
ECA233G5003 Erigeron canadensis HOM05D006846 ORTHO05D008473 7.1e-32 141.4 139 54.7
Haze_00536 Corylus avellana HOM05D006846 ORTHO05D008473 4.6e-31 138.7 187 46.5
TWI73G0996 Tripterygium wilfordii HOM05D006846 ORTHO05D008473 6.0e-31 138.3 149 53.7
TPR.G27493 Trifolium pratense HOM05D006846 ORTHO05D008473 2.3e-30 136.3 111 64.0
unitig_744.g24645 Utricularia gibba HOM05D006846 ORTHO05D008473 3.0e-30 136.0 144 52.1
HanXRQChr09g0246471 Helianthus annuus HOM05D006846 ORTHO05D008473 5.1e-30 135.2 152 48.0
SalBow8G5328 Salvia bowleyana HOM05D006846 ORTHO05D008473 5.1e-30 135.2 163 47.9
Cc03_g00240 Coffea canephora HOM05D006846 ORTHO05D008473 2.4e-27 126.3 116 56.9
COL.COLO4_34545 Corchorus olitorius HOM05D005582 ORTHO05D007028 3.1e-27 125.9 115 59.1
QL11p040346 Quercus lobata HOM05D006846 ORTHO05D008473 8.9e-27 124.4 180 44.4
Dinv29521 Davidia involucrata HOM05D006846 ORTHO05D008473 1.5e-26 123.6 115 59.1
Pp3c9_17660 Physcomitrium patens HOM05D006846 ORTHO05D008473 3.8e-25 119.0 145 46.9
MBI18_g09611_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 8.4e-25 117.9 119 54.6
Gohir.A09G242000 Gossypium hirsutum HOM05D006846 ORTHO05D008473 1.9e-24 116.7 167 45.5
Nn4g26496 Nelumbo nucifera HOM05D006846 ORTHO05D008473 3.2e-24 115.9 180 43.3
HPP92_004479 Vanilla planifolia HOM05D006846 ORTHO05D008473 5.4e-24 115.2 154 42.2
TAR365G0638 Trochodendron aralioides HOM05D006846 ORTHO05D008473 1.6e-23 113.6 127 55.9
ATR0693G432 Amborella trichopoda HOM05D006846 ORTHO05D008473 8.7e-22 107.8 74 73.0
Lsat_1_v5_gn_6_71441 Lactuca sativa HOM05D006846 ORTHO05D008473 8.7e-22 107.8 149 43.0
Mapoly0021s0070 Marchantia polymorpha HOM05D006846 ORTHO05D008473 4.3e-21 105.5 144 39.6
arahy.Tifrunner.gnm1.ann1.EYUN0W Arachis hypogaea HOM05D000385 ORTHO05D000269 9.6e-21 104.4 134 44.8
CSS0050245 Camellia sinensis var. sinensis HOM05D006846 ORTHO05D008473 2.4e-19 99.8 135 45.9
ClCG04G007450 Citrullus lanatus HOM05D006846 ORTHO05D008473 8.4e-17 91.3 94 56.4
CSS0047848 Camellia sinensis var. sinensis HOM05D006846 ORTHO05D008473 1.6e-15 87.0 54 81.5
Hma1.2p1_0013F.1_g007960 Hydrangea macrophylla HOM05D006846 ORTHO05D008473 3.0e-14 82.8 53 71.7
Glyma.09G078800 Glycine max HOM05D006846 ORTHO05D008473 1.1e-13 80.9 87 52.9
Cpa.g.sc146.38 Carica papaya HOM05D006846 ORTHO05D008473 1.9e-13 80.1 48 81.2
Zm00001eb158200 Zea mays HOM05D006846 ORTHO05D008473 9.6e-13 77.8 81 49.4
MBI19_g16347_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 6.2e-12 75.1 121 43.0
AagrBONN_evm.TU.Sc2ySwM_117.777 Anthoceros agrestis HOM05D006846 ORTHO05D008473 4.0e-11 72.4 56 53.6
Dinv18032 Davidia involucrata HOM05D006846 ORTHO05D008473 1.9e-08 63.5 78 52.6


User provided reference genes

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