Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G0625 Fragaria x ananassa HOM05D004981 ORTHO05D005635 3.5e-74 281.6 146 100.0
FvH4_4g13240 Fragaria vesca HOM05D004981 ORTHO05D005635 1.9e-67 259.2 140 96.4
FAN07G1886 Fragaria x ananassa HOM05D004981 ORTHO05D005635 5.3e-38 161.4 107 80.4
FAN04G0403 Fragaria x ananassa HOM05D004981 ORTHO05D005635 4.6e-34 148.3 111 75.7
FAN08G0200 Fragaria x ananassa HOM05D004981 ORTHO05D005635 3.9e-33 145.2 111 74.8
FAN18G1425 Fragaria x ananassa HOM05D004981 ORTHO05D005635 3.9e-33 145.2 111 74.8
FvH4_5g07000 Fragaria vesca HOM05D004981 ORTHO05D005635 8.8e-33 144.1 111 74.8
FAN08G2142 Fragaria x ananassa HOM05D004981 ORTHO05D005635 7.4e-32 141.0 111 73.0
RcHm_v2.0_Chr7g0191681 Rosa chinensis HOM05D004981 ORTHO05D005635 9.7e-32 140.6 107 74.8
FAN21G1455 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.3e-31 140.2 109 74.3
RcHm_v2.0_Chr7g0224681 Rosa chinensis HOM05D004981 ORTHO05D005635 6.5e-20 101.3 91 64.8
MD05G1045100 Malus domestica HOM05D004981 ORTHO05D005635 7.2e-19 97.8 84 65.5
Actinidia28057 Actinidia chinensis HOM05D004981 ORTHO05D007483 6.1e-18 94.7 91 60.4
CiPaw.06G153000 Carya illinoinensis HOM05D004981 ORTHO05D005635 6.1e-18 94.7 91 62.6
Lj5A239G83 Lonicera japonica HOM05D004981 ORTHO05D005635 6.1e-18 94.7 90 62.2
Sed0011642 Sechium edule HOM05D004981 ORTHO05D005635 6.1e-18 94.7 94 57.4
CSS0034779 Camellia sinensis var. sinensis HOM05D004981 ORTHO05D005635 8.0e-18 94.4 106 53.8
Prupe.8G061500 Prunus persica HOM05D004981 ORTHO05D005635 8.0e-18 94.4 99 58.6
MELO3C018646.2 Cucumis melo HOM05D004981 ORTHO05D005635 3.0e-17 92.4 91 58.2
HanXRQChr16g0514321 Helianthus annuus HOM05D004981 ORTHO05D005635 3.0e-17 92.4 90 58.9
Cfa005605 Carpinus fangiana HOM05D004981 ORTHO05D005635 3.9e-17 92.0 90 62.2
CsaV3_7G006460 Cucumis sativus L. HOM05D004981 ORTHO05D005635 3.9e-17 92.0 91 58.2
GSVIVG01029180001 Vitis vinifera HOM05D004981 ORTHO05D005635 3.9e-17 92.0 91 59.3
Hma1.2p1_0704F.1_g206680 Hydrangea macrophylla HOM05D004981 ORTHO05D005635 8.8e-17 90.9 91 58.2
Dinv24195 Davidia involucrata HOM05D004981 ORTHO05D005635 1.1e-16 90.5 89 59.6
Lsat_1_v5_gn_5_107300 Lactuca sativa HOM05D004981 ORTHO05D005635 1.1e-16 90.5 89 58.4
Lj6g0025255 Lotus japonicus HOM05D004981 ORTHO05D005635 2.0e-16 89.7 91 57.1
PGR142G3166 Punica granatum HOM05D004981 ORTHO05D005635 2.0e-16 89.7 96 54.2
ECA234G4021 Erigeron canadensis HOM05D004981 ORTHO05D005635 2.6e-16 89.4 104 50.0
CANSAT11G0061 Cannabis sativa HOM05D004981 ORTHO05D005635 3.3e-16 89.0 90 57.8
Peaxi162Scf00152g01024 Petunia axillaris HOM05D004981 ORTHO05D005635 3.3e-16 89.0 91 59.3
MD14G1166200 Malus domestica HOM05D004981 ORTHO05D005635 5.7e-16 88.2 83 60.2
Nitab4.5_0000480g0020 Nicotiana tabacum HOM05D004981 ORTHO05D005635 5.7e-16 88.2 91 58.2
Nitab4.5_0008051g0010 Nicotiana tabacum HOM05D004981 ORTHO05D005635 5.7e-16 88.2 91 58.2
QL11p020696 Quercus lobata HOM05D004981 ORTHO05D005635 5.7e-16 88.2 89 59.6
TAR114G0002 Trochodendron aralioides HOM05D004981 ORTHO05D005635 5.7e-16 88.2 114 49.1
PSO541G0435 Papaver somniferum HOM05D004981 ORTHO05D005635 7.4e-16 87.8 104 48.1
MSTRG.20297 Avicennia marina HOM05D004981 ORTHO05D005635 1.3e-15 87.0 83 59.0
Cc02_g21590 Coffea canephora HOM05D004981 ORTHO05D005635 1.3e-15 87.0 91 57.1
Rhsim05G0107500 Rhododendron simsii HOM05D004981 ORTHO05D005635 1.7e-15 86.7 84 59.5
Cpa.g.sc49.24 Carica papaya HOM05D004981 ORTHO05D005635 2.2e-15 86.3 98 53.1
AUR62010122 Chenopodium quinoa HOM05D004981 ORTHO05D005635 2.2e-15 86.3 83 60.2
Sopen04g004240 Solanum pennellii HOM05D004981 ORTHO05D005635 2.2e-15 86.3 94 51.1
TWI59G1067 Tripterygium wilfordii HOM05D004981 ORTHO05D005635 2.2e-15 86.3 87 58.6
AUR62013118 Chenopodium quinoa HOM05D004981 ORTHO05D005635 2.8e-15 85.9 83 60.2
Sc20g0002060 Simmondsia chinensis HOM05D004981 ORTHO05D005635 2.8e-15 85.9 107 51.4
PGSC0003DMG400011507 Solanum tuberosum HOM05D004981 ORTHO05D005635 2.8e-15 85.9 94 51.1
Prupe.5G160300 Prunus persica HOM05D004981 ORTHO05D005635 3.7e-15 85.5 88 60.2
Rhsim05G0107600 Rhododendron simsii HOM05D004981 ORTHO05D005635 3.7e-15 85.5 84 58.3
CAN.G274.6 Capsicum annuum HOM05D004981 ORTHO05D005635 4.8e-15 85.1 94 52.1
Gohir.A03G173700 Gossypium hirsutum HOM05D004981 ORTHO05D005635 4.8e-15 85.1 90 58.9
PSO781G0052 Papaver somniferum HOM05D004981 ORTHO05D005635 4.8e-15 85.1 104 46.2
Solyc04g009060.4 Solanum lycopersicum HOM05D004981 ORTHO05D005635 4.8e-15 85.1 94 51.1
EL10Ac9g21471 Beta vulgaris HOM05D004981 ORTHO05D005635 6.3e-15 84.7 83 60.2
CDE10G0645 Ceratophyllum demersum HOM05D004981 ORTHO05D005635 6.3e-15 84.7 90 53.3
Ca_00133_v3 Cicer arietinum L. HOM05D004981 ORTHO05D005635 6.3e-15 84.7 87 58.6
Gohir.D02G196800 Gossypium hirsutum HOM05D004981 ORTHO05D005635 6.3e-15 84.7 91 58.2
COL.COLO4_24958 Corchorus olitorius HOM05D004981 ORTHO05D005635 8.2e-15 84.3 102 53.9
Gorai.005G219800 Gossypium raimondii HOM05D004981 ORTHO05D005635 8.2e-15 84.3 91 58.2
Oeu047361.1 Olea europaea HOM05D004981 ORTHO05D005635 8.2e-15 84.3 99 51.5
Thecc.02G139100 Theobroma cacao HOM05D004981 ORTHO05D005635 1.4e-14 83.6 91 56.0
Lalb_Chr20g0123041 Lupinus albus HOM05D004981 ORTHO05D005635 3.1e-14 82.4 89 56.2
MBI02_g08724_MAGBIO Magnolia biondii HOM05D004981 ORTHO05D005635 3.1e-14 82.4 90 53.3
VMungo0540G0644 Vigna mungo HOM05D004981 ORTHO05D005635 4.1e-14 82.0 82 57.3
Glyma.08G179200 Glycine max HOM05D004981 ORTHO05D005635 7.0e-14 81.3 82 57.3
Glyma.15G053300 Glycine max HOM05D004981 ORTHO05D005635 7.0e-14 81.3 82 57.3
Duzib132G0770 Durio zibethinus HOM05D004981 ORTHO05D005635 9.1e-14 80.9 91 54.9
Duzib248G0633 Durio zibethinus HOM05D004981 ORTHO05D005635 1.2e-13 80.5 91 54.9
Gohir.A13G067000 Gossypium hirsutum HOM05D004981 ORTHO05D005635 1.2e-13 80.5 84 56.0
Gorai.013G061400 Gossypium raimondii HOM05D004981 ORTHO05D005635 1.2e-13 80.5 84 56.0
Sabra01G0158000 Salix brachista HOM05D004981 ORTHO05D005635 1.2e-13 80.5 93 53.8
Os09g0372400 Oryza sativa ssp. japonica HOM05D004981 ORTHO05D005635 1.6e-13 80.1 86 52.3
Atru.chr5.2124 Acer truncatum HOM05D004981 ORTHO05D005635 2.0e-13 79.7 91 56.0
TPR.G9514 Trifolium pratense HOM05D004981 ORTHO05D005635 2.0e-13 79.7 86 55.8
Gohir.D13G054600 Gossypium hirsutum HOM05D004981 ORTHO05D005635 2.6e-13 79.3 84 54.8
Zm00001eb311320 Zea mays HOM05D004981 ORTHO05D005635 2.6e-13 79.3 86 50.0
ClCG09G015370 Citrullus lanatus HOM05D004981 ORTHO05D005635 3.5e-13 79.0 91 52.7
Nn5g30124 Nelumbo nucifera HOM05D004981 ORTHO05D005635 3.5e-13 79.0 90 52.2
Psat1g216680 Pisum sativum HOM05D004981 ORTHO05D005635 3.5e-13 79.0 87 55.2
Ciclev10025761m.g Citrus clementina HOM05D004981 ORTHO05D005635 4.5e-13 78.6 84 59.5
BraA10t44837Z Brassica rapa HOM05D004981 ORTHO05D005635 5.9e-13 78.2 84 53.6
Potri.001G205700 Populus trichocarpa HOM05D004981 ORTHO05D005635 7.7e-13 77.8 102 47.1
SEGI_39436 Sequoiadendron giganteum HOM05D004981 ORTHO05D005635 7.7e-13 77.8 90 48.9
BcaB08g37209 Brassica carinata HOM05D004981 ORTHO05D005635 1.0e-12 77.4 83 54.2
A10p27880 Brassica napus HOM05D004981 ORTHO05D005635 1.0e-12 77.4 84 53.6
C09p67980 Brassica napus HOM05D004981 ORTHO05D005635 1.0e-12 77.4 84 53.6
BolC9t59557H Brassica oleracea HOM05D004981 ORTHO05D005635 1.0e-12 77.4 84 53.6
Medtr2g008810 Medicago truncatula HOM05D004981 ORTHO05D005635 1.7e-12 76.6 80 56.2
Phvul.006G206700 Phaseolus vulgaris HOM05D004981 ORTHO05D005635 1.7e-12 76.6 85 51.8
ATR0753G166 Amborella trichopoda HOM05D004981 ORTHO05D005635 2.2e-12 76.3 110 45.5
SalBow5G0436 Salvia bowleyana HOM05D004981 ORTHO05D005635 2.2e-12 76.3 107 48.6
Migut.B00612 Erythranthe guttata HOM05D004981 ORTHO05D005635 3.8e-12 75.5 97 47.4
arahy.Tifrunner.gnm1.ann1.NS4PA6 Arachis hypogaea HOM05D004981 ORTHO05D005635 6.5e-12 74.7 90 54.4
arahy.Tifrunner.gnm1.ann1.NXB9BB Arachis hypogaea HOM05D004981 ORTHO05D005635 6.5e-12 74.7 90 54.4
DCAR_021855 Daucus carota HOM05D004981 ORTHO05D005635 6.5e-12 74.7 81 54.3
Potri.003G023700 Populus trichocarpa HOM05D004981 ORTHO05D005635 1.1e-11 73.9 96 50.0
Dinv09034 Davidia involucrata HOM05D004981 ORTHO05D005635 1.5e-11 73.6 76 56.6
Manes.06G012400 Manihot esculenta HOM05D004981 ORTHO05D005635 1.5e-11 73.6 85 55.3
Eucgr.I02666 Eucalyptus grandis HOM05D004981 ORTHO05D005635 2.5e-11 72.8 72 59.7
Mapoly0041s0053 Marchantia polymorpha HOM05D004981 ORTHO05D005635 2.5e-11 72.8 88 47.7
Aa31LG3G17630 Aethionema arabicum HOM05D004981 ORTHO05D005635 9.4e-11 70.9 90 51.1
Lj1g0016172 Lotus japonicus HOM05D004981 ORTHO05D005635 1.6e-10 70.1 77 53.2
Pp3c22_4170 Physcomitrium patens HOM05D004981 ORTHO05D005635 2.1e-10 69.7 94 44.7
Ah.01g009610 Amaranthus hybridus HOM05D004981 ORTHO05D005635 4.7e-10 68.6 66 60.6
SGA_v2.0_scaffold83G26298 Striga asiatica HOM05D004981 ORTHO05D005635 1.4e-09 67.0 115 42.6
Sp6g33940 Schrenkiella parvula HOM05D004981 ORTHO05D005635 1.8e-09 66.6 93 49.5
TPR.G21754 Trifolium pratense HOM05D004981 ORTHO05D005635 2.3e-09 66.2 73 52.1
Oeu011769.5 Olea europaea HOM05D004981 ORTHO05D005635 3.0e-09 65.9 73 52.1
COL.COLO4_15286 Corchorus olitorius HOM05D004981 ORTHO05D005635 4.0e-09 65.5 83 53.0
Hund00058 Selenicereus undatus HOM05D004981 ORTHO05D005635 7.5e-08 61.2 83 47.0
Aqoxy6G00803 Aquilegia oxysepala HOM05D004981 ORTHO05D005635 1.7e-07 60.1 74 50.0
Lsat_1_v5_gn_5_82561 Lactuca sativa HOM05D004981 ORTHO05D005635 2.8e-07 59.3 78 52.6
THA.LOC104818438 Tarenaya hassleriana HOM05D004981 ORTHO05D005635 2.8e-07 59.3 117 36.8
HPP92_013085 Vanilla planifolia HOM05D004981 ORTHO05D005635 2.8e-07 59.3 72 50.0
vmacro19928 Vaccinium macrocarpon HOM05D004981 ORTHO05D005635 3.7e-07 58.9 88 46.6
VMungo1383G1991 Vigna mungo HOM05D004981 ORTHO05D005635 3.1e-06 55.8 64 51.6
CBR_g31506 Chara braunii HOM05D004981 ORTHO05D005635 5.3e-06 55.1 102 35.3
SMO356G0631 Selaginella moellendorffii HOM05D004981 ORTHO05D005635 9.1e-06 54.3 75 46.7


User provided reference genes

Program Settings