Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G0599 Fragaria x ananassa HOM05D005939 ORTHO05D007412 7.0e-198 693.7 345 100.0
FvH4_4g10650 Fragaria vesca HOM05D005939 ORTHO05D007412 2.2e-114 416.4 288 78.1
FAN12G3158 Fragaria x ananassa HOM05D005939 ORTHO05D007412 2.2e-114 416.4 288 78.1
FAN12G1526 Fragaria x ananassa HOM05D005939 ORTHO05D007412 2.4e-113 412.9 288 77.8
FAN07G1487 Fragaria x ananassa HOM05D005939 ORTHO05D007412 1.7e-111 406.8 290 76.9
RcHm_v2.0_Chr4g0406301 Rosa chinensis HOM05D005939 ORTHO05D007412 1.0e-87 327.8 294 66.3
Prupe.1G203000 Prunus persica HOM05D005939 ORTHO05D007412 1.7e-74 283.9 283 58.7
CiPaw.01G172900 Carya illinoinensis HOM05D005939 ORTHO05D007412 4.6e-72 275.8 238 61.8
Ciclev10021893m.g Citrus clementina HOM05D005939 ORTHO05D007412 7.8e-72 275.0 298 53.4
QL10p052591 Quercus lobata HOM05D005939 ORTHO05D007412 3.9e-71 272.7 238 61.8
Dinv44170 Davidia involucrata HOM05D005939 ORTHO05D007412 1.5e-70 270.8 257 57.2
Ca_20809_v3 Cicer arietinum L. HOM05D005939 ORTHO05D007412 9.5e-70 268.1 243 60.1
arahy.Tifrunner.gnm1.ann1.K9Q8M8 Arachis hypogaea HOM05D005939 ORTHO05D007412 1.6e-69 267.3 296 54.4
GSVIVG01038097001 Vitis vinifera HOM05D005939 ORTHO05D007412 1.6e-69 267.3 294 53.4
Medtr4g068190 Medicago truncatula HOM05D005939 ORTHO05D007412 4.7e-69 265.8 237 60.3
ClCG07G015100 Citrullus lanatus HOM05D005939 ORTHO05D007412 6.2e-69 265.4 238 61.3
Eucgr.C02176 Eucalyptus grandis HOM05D005939 ORTHO05D007412 8.0e-69 265.0 301 52.8
TPR.G34240 Trifolium pratense HOM05D005939 ORTHO05D007412 8.0e-69 265.0 239 60.3
EL10Ac3g06033 Beta vulgaris HOM05D005939 ORTHO05D007412 1.1e-68 264.6 289 53.6
arahy.Tifrunner.gnm1.ann1.2A1NT4 Arachis hypogaea HOM05D005939 ORTHO05D007412 1.4e-68 264.2 296 52.7
TAR365G0833 Trochodendron aralioides HOM05D005939 ORTHO05D007412 1.8e-68 263.8 235 60.4
CsaV3_4G002650 Cucumis sativus L. HOM05D005939 ORTHO05D007412 4.0e-68 262.7 238 60.1
VMungo1127G1625 Vigna mungo HOM05D005939 ORTHO05D007412 4.0e-68 262.7 252 57.9
Atru.chr4.1353 Acer truncatum HOM05D005939 ORTHO05D007412 5.2e-68 262.3 289 53.3
Glyma.12G049500 Glycine max HOM05D005939 ORTHO05D007412 5.2e-68 262.3 241 58.5
Psat7g208400 Pisum sativum HOM05D005939 ORTHO05D007412 5.2e-68 262.3 256 57.0
Thecc.04G170700 Theobroma cacao HOM05D005939 ORTHO05D007412 1.2e-67 261.2 235 60.4
Manes.04G037900 Manihot esculenta HOM05D005939 ORTHO05D007412 1.5e-67 260.8 233 60.1
Sed0015623 Sechium edule HOM05D005939 ORTHO05D007412 1.5e-67 260.8 238 58.4
vmacro00653 Vaccinium macrocarpon HOM05D005939 ORTHO05D007412 2.0e-67 260.4 238 60.9
CANSAT64G1160 Cannabis sativa HOM05D005939 ORTHO05D007412 2.6e-67 260.0 283 52.7
Cc06_g20200 Coffea canephora HOM05D005939 ORTHO05D007412 2.6e-67 260.0 257 56.4
Glyma.11G124900 Glycine max HOM05D005939 ORTHO05D007412 5.8e-67 258.8 241 58.5
AUR62023817 Chenopodium quinoa HOM05D000031 ORTHO05D007412 9.8e-67 258.1 257 54.9
Gorai.005G125400 Gossypium raimondii HOM05D005939 ORTHO05D007412 9.8e-67 258.1 290 54.5
Potri.017G017500 Populus trichocarpa HOM05D005939 ORTHO05D007412 1.3e-66 257.7 306 51.6
AUR62002369 Chenopodium quinoa HOM05D005939 ORTHO05D007412 2.9e-66 256.5 253 55.3
Duzib212G0518 Durio zibethinus HOM05D005939 ORTHO05D007412 2.9e-66 256.5 235 60.4
Nitab4.5_0000147g0370 Nicotiana tabacum HOM05D005939 ORTHO05D007412 4.9e-66 255.8 239 59.4
THA.LOC104803948 Tarenaya hassleriana HOM05D005939 ORTHO05D007412 6.4e-66 255.4 238 59.7
Hma1.2p1_1220F.1_g268050 Hydrangea macrophylla HOM05D005939 ORTHO05D007412 8.3e-66 255.0 289 52.6
TWI38G2333 Tripterygium wilfordii HOM05D005939 ORTHO05D007412 1.9e-65 253.8 258 54.3
ECA238G2261 Erigeron canadensis HOM05D005939 ORTHO05D007412 4.1e-65 252.7 238 55.9
Phvul.011G051700 Phaseolus vulgaris HOM05D005939 ORTHO05D007412 5.4e-65 252.3 241 57.3
Nitab4.5_0006294g0010 Nicotiana tabacum HOM05D005939 ORTHO05D007412 7.0e-65 251.9 266 55.3
Sabra17G0005000 Salix brachista HOM05D005939 ORTHO05D007412 1.6e-64 250.8 239 57.7
Thhalv10001621m.g Eutrema salsugineum HOM05D005939 ORTHO05D007412 3.5e-64 249.6 236 58.9
HanXRQChr14g0433821 Helianthus annuus HOM05D005939 ORTHO05D007412 3.5e-64 249.6 239 56.9
Peaxi162Scf00811g00112 Petunia axillaris HOM05D005939 ORTHO05D007412 3.5e-64 249.6 259 54.8
Sp4g25670 Schrenkiella parvula HOM05D005939 ORTHO05D007412 3.5e-64 249.6 236 58.9
Sc05g0005150 Simmondsia chinensis HOM05D005939 ORTHO05D007412 6.0e-64 248.8 235 57.0
Lj2C294T20 Lonicera japonica HOM05D005939 ORTHO05D007412 7.8e-64 248.4 254 55.1
Lj3g0005991 Lotus japonicus HOM05D005939 ORTHO05D007412 7.8e-64 248.4 238 56.3
Potri.007G134600 Populus trichocarpa HOM05D005939 ORTHO05D007412 1.0e-63 248.1 304 51.3
Lalb_Chr03g0026021 Lupinus albus HOM05D005939 ORTHO05D007412 1.3e-63 247.7 263 53.2
PSO675G4893 Papaver somniferum HOM05D005939 ORTHO05D007412 1.3e-63 247.7 254 55.1
Carub.0004s2605 Capsella rubella HOM05D005939 ORTHO05D007412 2.3e-63 246.9 239 56.9
ATR0743G264 Amborella trichopoda HOM05D005939 ORTHO05D007412 3.0e-63 246.5 286 53.1
Ah.13g073680 Amaranthus hybridus HOM05D005939 ORTHO05D007412 3.9e-63 246.1 256 55.1
Aa31LG1G25290 Aethionema arabicum HOM05D005939 ORTHO05D007412 5.0e-63 245.7 244 57.0
AT2G43560 Arabidopsis thaliana HOM05D005939 ORTHO05D007412 5.0e-63 245.7 236 56.8
CDE02G1670 Ceratophyllum demersum HOM05D005939 ORTHO05D007412 6.6e-63 245.4 227 58.1
PSO017G1523 Papaver somniferum HOM05D005939 ORTHO05D007412 6.6e-63 245.4 293 50.5
BcaB06g29327 Brassica carinata HOM05D005939 ORTHO05D007412 8.6e-63 245.0 235 57.4
Migut.N03077 Erythranthe guttata HOM05D005939 ORTHO05D007412 1.1e-62 244.6 290 50.3
Hund03189 Selenicereus undatus HOM05D005939 ORTHO05D007412 1.5e-62 244.2 236 57.6
AL4G42360 Arabidopsis lyrata HOM05D005939 ORTHO05D007412 1.9e-62 243.8 236 56.8
PGR044G0374 Punica granatum HOM05D005939 ORTHO05D007412 2.5e-62 243.4 317 48.6
CAN.G1263.30 Capsicum annuum HOM05D005939 ORTHO05D007412 3.3e-62 243.0 262 53.8
Aqoxy2G04151 Aquilegia oxysepala HOM05D005939 ORTHO05D007412 4.3e-62 242.7 239 59.0
MSTRG.22020 Avicennia marina HOM05D005939 ORTHO05D007412 4.3e-62 242.7 250 56.4
Oeu032137.1 Olea europaea HOM05D005939 ORTHO05D007412 7.3e-62 241.9 255 54.9
A04p32840 Brassica napus HOM05D005939 ORTHO05D007412 9.5e-62 241.5 232 57.8
BcaC02g07165 Brassica carinata HOM05D005939 ORTHO05D007412 1.2e-61 241.1 232 57.8
C04p70550 Brassica napus HOM05D005939 ORTHO05D007412 1.2e-61 241.1 232 57.8
BolC4t28556H Brassica oleracea HOM05D005939 ORTHO05D007412 1.2e-61 241.1 232 57.8
Lsat_1_v5_gn_2_34361 Lactuca sativa HOM05D005939 ORTHO05D007412 1.2e-61 241.1 239 54.4
PGSC0003DMG400015011 Solanum tuberosum HOM05D005939 ORTHO05D007412 2.1e-61 240.4 241 55.2
Solyc04g015040.3 Solanum lycopersicum HOM05D005939 ORTHO05D007412 2.8e-61 240.0 239 56.9
Sopen04g007060 Solanum pennellii HOM05D005939 ORTHO05D007412 2.8e-61 240.0 239 56.9
BraA04t18746Z Brassica rapa HOM05D005939 ORTHO05D007412 3.6e-61 239.6 288 50.3
Os08g0541400 Oryza sativa ssp. japonica HOM05D005939 ORTHO05D007412 4.4e-59 232.6 232 56.5
HPP92_001268 Vanilla planifolia HOM05D005939 ORTHO05D007412 2.2e-58 230.3 234 53.8
HPP92_001251 Vanilla planifolia HOM05D005939 ORTHO05D007412 2.9e-58 229.9 234 53.8
Haze_01409 Corylus avellana HOM05D005939 ORTHO05D007412 3.7e-58 229.6 364 41.8
unitig_578.g16716 Utricularia gibba HOM05D005939 ORTHO05D007412 5.4e-57 225.7 219 58.0
Haze_01405 Corylus avellana HOM05D005939 ORTHO05D007412 1.3e-55 221.1 379 39.1
Sabra17G0013700 Salix brachista HOM05D005939 ORTHO05D007412 5.6e-54 215.7 332 41.3
CSS0033753 Camellia sinensis var. sinensis HOM05D005939 ORTHO05D007412 2.1e-53 213.8 281 45.2
Mapoly0034s0118 Marchantia polymorpha HOM05D005939 ORTHO05D007412 2.8e-53 213.4 236 50.8
SGA_v2.0_scaffold19G08830 Striga asiatica HOM05D005939 ORTHO05D007412 9.9e-51 204.9 360 41.7
SMO145G0045 Selaginella moellendorffii HOM05D005939 ORTHO05D007412 1.3e-50 204.5 206 52.9
Pp3c4_8140 Physcomitrium patens HOM05D005939 ORTHO05D007412 3.8e-50 203.0 254 47.2
Cpa.g.sc9.337 Carica papaya HOM05D005939 ORTHO05D007412 9.2e-49 198.4 199 55.3
DCAR_028412 Daucus carota HOM05D005939 ORTHO05D007412 9.2e-49 198.4 184 59.8
AagrBONN_evm.TU.Sc2ySwM_228.5810 Anthoceros agrestis HOM05D005939 ORTHO05D007412 6.0e-48 195.7 258 45.7
MELO3C017776.2 Cucumis melo HOM05D005939 ORTHO05D007412 2.3e-47 193.7 198 55.1
Nn1g09731 Nelumbo nucifera HOM05D005939 ORTHO05D007412 1.5e-46 191.0 234 49.1
CARHR138670 Cardamine hirsuta HOM05D005939 ORTHO05D007412 2.5e-46 190.3 186 58.1
Gohir.D02G110500 Gossypium hirsutum HOM05D005939 ORTHO05D007412 2.5e-46 190.3 251 49.4
Hma1.2p1_1220F.1_g268060 Hydrangea macrophylla HOM05D005939 ORTHO05D007412 2.5e-46 190.3 184 58.2
Gohir.A02G092400 Gossypium hirsutum HOM05D005939 ORTHO05D007412 4.7e-45 186.0 196 54.6
CBR_g49189 Chara braunii HOM05D005939 ORTHO05D007412 1.5e-43 181.0 214 48.1
Actinidia27098 Actinidia chinensis HOM05D005939 ORTHO05D007412 1.3e-42 177.9 214 50.5
Cre12.g530300 Chlamydomonas reinhardtii HOM05D005939 ORTHO05D007412 5.6e-38 162.5 210 43.3
MCO01G461 Micromonas commoda HOM05D005939 ORTHO05D007412 8.4e-34 148.7 290 37.6
arahy.Tifrunner.gnm1.ann1.AL6ICI Arachis hypogaea HOM05D005939 ORTHO05D007412 3.5e-32 143.3 112 62.5
Zm00001eb037280 Zea mays HOM05D005939 ORTHO05D007412 4.6e-32 142.9 92 75.0
PGR044G0222 Punica granatum HOM05D005939 ORTHO05D007412 3.9e-31 139.8 158 53.2
TAR371G0104 Trochodendron aralioides HOM05D000577 ORTHO05D001093 4.6e-24 116.3 86 65.1
TAR365G1222 Trochodendron aralioides HOM05D001154 ORTHO05D010892 6.2e-21 105.9 66 74.2
TAR626G1098 Trochodendron aralioides HOM05D001154 ORTHO05D010892 8.2e-21 105.5 66 74.2
Gohir.D07G207866 Gossypium hirsutum HOM05D005939 ORTHO05D007412 1.4e-20 104.8 71 71.8
Gorai.001G234400 Gossypium raimondii HOM05D005939 ORTHO05D007412 2.0e-19 100.9 71 69.0
TAR374G0473 Trochodendron aralioides HOM05D005939 ORTHO05D007412 7.6e-19 99.0 65 72.3
arahy.Tifrunner.gnm1.ann1.6CLX5T Arachis hypogaea HOM05D005939 ORTHO05D026929 1.4e-17 94.7 45 97.8
PRCOL_00000394 Prasinoderma coloniale HOM05D005939 ORTHO05D007412 2.5e-17 94.0 196 34.2
arahy.Tifrunner.gnm1.ann1.4S56Q7 Arachis hypogaea HOM05D005939 ORTHO05D026929 1.5e-14 84.7 62 64.5
Sabra07G0109200 Salix brachista HOM05D005939 ORTHO05D007412 4.3e-14 83.2 233 31.8
Haze_01400 Corylus avellana HOM05D005939 ORTHO05D007412 1.5e-11 74.7 41 82.9
arahy.Tifrunner.gnm1.ann1.1BT4II Arachis hypogaea HOM05D005939 ORTHO05D007412 8.5e-10 68.9 139 32.4
Hma1.2p1_1220F.1_g268040 Hydrangea macrophylla HOM05D005939 ORTHO05D007412 3.2e-09 67.0 104 42.3
CANSAT35G0154 Cannabis sativa HOM05D005939 ORTHO05D007412 3.6e-08 63.5 99 38.4
CANSAT54G1728 Cannabis sativa HOM05D005939 ORTHO05D007412 3.6e-08 63.5 99 38.4
vmacro07354 Vaccinium macrocarpon HOM05D001775 ORTHO05D008700 1.4e-07 61.6 279 25.4
arahy.Tifrunner.gnm1.ann1.D82PE3 Arachis hypogaea HOM05D005939 ORTHO05D007412 2.3e-07 60.8 68 44.1
arahy.Tifrunner.gnm1.ann1.NSWK12 Arachis hypogaea HOM05D005939 ORTHO05D007412 2.3e-07 60.8 29 96.6
arahy.Tifrunner.gnm1.ann1.KLQZ1V Arachis hypogaea HOM05D005939 ORTHO05D007412 5.1e-07 59.7 67 44.8
TAR362G1321 Trochodendron aralioides HOM05D001154 ORTHO05D010892 5.1e-07 59.7 29 93.1
FAN09G2175 Fragaria x ananassa HOM05D000031 ORTHO05D001864 6.7e-07 59.3 171 28.7
Peaxi162Scf00045g01826 Petunia axillaris HOM05D000371 ORTHO05D003573 6.7e-07 59.3 229 27.1
MCO07G350 Micromonas commoda HOM05D006054 ORTHO05D044148 1.1e-06 58.5 173 27.7
Sabra01G0053500 Salix brachista HOM05D000371 ORTHO05D003573 1.1e-06 58.5 231 30.3
Gohir.A10G186300 Gossypium hirsutum HOM05D005939 ORTHO05D007412 1.5e-06 58.2 51 52.9
Prupe.7G122200 Prunus persica HOM05D000031 ORTHO05D001864 1.5e-06 58.2 171 28.7
SalBow4G0098 Salvia bowleyana HOM05D000371 ORTHO05D003573 1.5e-06 58.2 270 25.9
arahy.Tifrunner.gnm1.ann1.A48KP8 Arachis hypogaea HOM05D005939 ORTHO05D007412 1.9e-06 57.8 68 44.1
arahy.Tifrunner.gnm1.ann1.LDUK9I Arachis hypogaea HOM05D005939 ORTHO05D007412 1.9e-06 57.8 109 39.4
Mapoly0135s0005 Marchantia polymorpha HOM05D001775 ORTHO05D008700 2.5e-06 57.4 181 28.2
TAR625G1104 Trochodendron aralioides HOM05D000577 ORTHO05D001093 2.5e-06 57.4 37 70.3
Atru.chr10.260 Acer truncatum HOM05D000371 ORTHO05D003573 3.3e-06 57.0 236 28.0
AagrBONN_evm.TU.Sc2ySwM_368.219 Anthoceros agrestis HOM05D001775 ORTHO05D008700 3.3e-06 57.0 180 26.7
arahy.Tifrunner.gnm1.ann1.BLF45B Arachis hypogaea HOM05D001775 ORTHO05D008700 3.3e-06 57.0 179 26.8
arahy.Tifrunner.gnm1.ann1.V2ZWQA Arachis hypogaea HOM05D001775 ORTHO05D008700 3.3e-06 57.0 179 26.8
MELO3C009415.2 Cucumis melo HOM05D001775 ORTHO05D008700 3.3e-06 57.0 171 28.1
HanXRQChr01g0016601 Helianthus annuus HOM05D001775 ORTHO05D008700 3.3e-06 57.0 216 26.4
Nn2g13922 Nelumbo nucifera HOM05D001775 ORTHO05D008700 3.3e-06 57.0 171 28.1
Sed0004809 Sechium edule HOM05D001775 ORTHO05D008700 3.3e-06 57.0 171 27.5
Potri.016G096600 Populus trichocarpa HOM05D001775 ORTHO05D008700 4.3e-06 56.6 273 26.4
CANSAT25G3870 Cannabis sativa HOM05D001775 ORTHO05D008700 5.7e-06 56.2 270 25.9
Eucgr.K02414 Eucalyptus grandis HOM05D001775 ORTHO05D008700 5.7e-06 56.2 180 26.1
Sabra16G0099900 Salix brachista HOM05D001775 ORTHO05D008700 5.7e-06 56.2 171 27.5
Ah.15g091350 Amaranthus hybridus HOM05D001775 ORTHO05D008700 7.4e-06 55.8 171 26.9
ECA238G1996 Erigeron canadensis HOM05D001775 ORTHO05D008700 7.4e-06 55.8 171 27.5
Oeu031869.1 Olea europaea HOM05D001775 ORTHO05D008700 7.4e-06 55.8 171 27.5
Peaxi162Scf01063g00114 Petunia axillaris HOM05D001775 ORTHO05D008700 7.4e-06 55.8 179 26.3
Sc07g0004660 Simmondsia chinensis HOM05D001775 ORTHO05D008700 7.4e-06 55.8 171 26.9
CAN.G396.7 Capsicum annuum HOM05D000371 ORTHO05D003573 9.7e-06 55.5 267 25.5
Zm00001eb302310 Zea mays HOM05D001775 ORTHO05D008700 9.7e-06 55.5 171 28.1


User provided reference genes

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