Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G0570 Fragaria x ananassa HOM05D006853 ORTHO05D008906 9.9e-144 513.5 264 100.0
FvH4_4g28700 Fragaria vesca HOM05D006853 ORTHO05D008906 1.1e-142 510.0 264 99.6
FAN07G1226 Fragaria x ananassa HOM05D006853 ORTHO05D006634 4.9e-135 484.6 261 94.3
RcHm_v2.0_Chr4g0436821 Rosa chinensis HOM05D006853 ORTHO05D008906 5.9e-120 434.5 264 86.4
Prupe.1G299000 Prunus persica HOM05D006853 ORTHO05D006634 7.5e-91 337.8 245 73.1
MD16G1052100 Malus domestica HOM05D006853 ORTHO05D008906 3.7e-90 335.5 273 67.0
MD13G1053100 Malus domestica HOM05D006853 ORTHO05D008906 5.4e-89 331.6 273 66.3
Ciclev10032464m.g Citrus clementina HOM05D006853 ORTHO05D008906 2.9e-79 299.3 272 59.9
Atru.chr11.1459 Acer truncatum HOM05D006853 ORTHO05D008906 1.9e-78 296.6 271 59.4
Atru.chr11.1493 Acer truncatum HOM05D006853 ORTHO05D008906 1.9e-78 296.6 271 59.4
Hma1.2p1_0762F.1_g214380 Hydrangea macrophylla HOM05D006853 ORTHO05D008906 1.2e-77 293.9 268 60.1
Cfa009867 Carpinus fangiana HOM05D006853 ORTHO05D008906 2.8e-77 292.7 259 60.6
Haze_23238 Corylus avellana HOM05D006853 ORTHO05D008906 3.6e-77 292.4 279 59.1
CiPaw.06G096100 Carya illinoinensis HOM05D006853 ORTHO05D008906 6.1e-77 291.6 278 57.2
CSS0003455 Camellia sinensis var. sinensis HOM05D006853 ORTHO05D008906 3.0e-76 289.3 270 58.5
QL03p047845 Quercus lobata HOM05D006853 ORTHO05D008906 8.9e-76 287.7 272 59.9
Cpa.g.sc53.10 Carica papaya HOM05D006853 ORTHO05D008906 7.5e-75 284.6 275 56.4
Duzib268G1722 Durio zibethinus HOM05D006853 ORTHO05D008906 3.7e-74 282.3 278 57.6
CANSAT64G2393 Cannabis sativa HOM05D006853 ORTHO05D008906 6.4e-74 281.6 269 56.5
COL.COLO4_27747 Corchorus olitorius HOM05D006853 ORTHO05D008906 1.4e-73 280.4 277 56.7
PGR102G0342 Punica granatum HOM05D006853 ORTHO05D008906 1.4e-73 280.4 276 58.0
Rhsim09G0117300 Rhododendron simsii HOM05D006853 ORTHO05D008906 7.0e-73 278.1 272 55.1
Gohir.A03G107900 Gossypium hirsutum HOM05D006853 ORTHO05D008906 9.2e-73 277.7 277 56.7
Thecc.02G317700 Theobroma cacao HOM05D006853 ORTHO05D008906 9.2e-73 277.7 277 56.3
Cc11_g11200 Coffea canephora HOM05D006853 ORTHO05D008906 1.6e-72 276.9 268 55.6
TAR624G1108 Trochodendron aralioides HOM05D006853 ORTHO05D008906 2.7e-72 276.2 267 59.6
Nitab4.5_0000027g0460 Nicotiana tabacum HOM05D006853 ORTHO05D008906 3.5e-72 275.8 273 55.3
TWI31G0390 Tripterygium wilfordii HOM05D006853 ORTHO05D008906 3.5e-72 275.8 246 61.8
Lsat_1_v5_gn_8_37640 Lactuca sativa HOM05D006853 ORTHO05D008906 1.0e-71 274.2 268 55.2
Lj6P771T55 Lonicera japonica HOM05D006853 ORTHO05D008906 1.7e-71 273.5 271 56.8
CAN.G184.17 Capsicum annuum HOM05D006853 ORTHO05D008906 3.9e-71 272.3 231 60.6
Sabra10G0103400 Salix brachista HOM05D006853 ORTHO05D008906 6.6e-71 271.6 278 55.4
CARHR146460 Cardamine hirsuta HOM05D006853 ORTHO05D008906 1.1e-70 270.8 270 52.2
Potri.010G134600 Populus trichocarpa HOM05D006853 ORTHO05D008906 1.1e-70 270.8 278 55.4
Actinidia31918 Actinidia chinensis HOM05D006853 ORTHO05D006634 1.5e-70 270.4 258 57.0
Manes.06G077700 Manihot esculenta HOM05D006853 ORTHO05D008906 1.9e-70 270.0 278 55.0
Nitab4.5_0010998g0020 Nicotiana tabacum HOM05D006853 ORTHO05D008906 3.3e-70 269.2 273 54.6
PGSC0003DMG400025119 Solanum tuberosum HOM05D006853 ORTHO05D008906 4.3e-70 268.9 236 58.9
CSS0047872 Camellia sinensis var. sinensis HOM05D006853 ORTHO05D008906 5.6e-70 268.5 279 52.0
Sed0015072 Sechium edule HOM05D006853 ORTHO05D008906 5.6e-70 268.5 274 54.0
BcaC03g17267 Brassica carinata HOM05D006853 ORTHO05D008906 9.5e-70 267.7 276 55.1
BcaC03g17268 Brassica carinata HOM05D006853 ORTHO05D008906 9.5e-70 267.7 276 55.1
MELO3C005171.2 Cucumis melo HOM05D006853 ORTHO05D008906 9.5e-70 267.7 234 59.8
Gohir.D02G132900 Gossypium hirsutum HOM05D006853 ORTHO05D008906 1.6e-69 266.9 276 55.4
AUR62007823 Chenopodium quinoa HOM05D006853 ORTHO05D008906 2.1e-69 266.5 273 52.7
Eucgr.B03092 Eucalyptus grandis HOM05D006853 ORTHO05D008906 2.1e-69 266.5 277 54.9
AT3G25545 Arabidopsis thaliana HOM05D006853 ORTHO05D008906 2.8e-69 266.2 271 51.7
C02p52120 Brassica napus HOM05D006853 ORTHO05D008906 2.8e-69 266.2 278 54.3
BolC2t11296H Brassica oleracea HOM05D006853 ORTHO05D008906 2.8e-69 266.2 278 54.3
Ah.02g127470 Amaranthus hybridus HOM05D001046 ORTHO05D002934 3.6e-69 265.8 242 59.1
Sopen05g006060 Solanum pennellii HOM05D006853 ORTHO05D008906 4.7e-69 265.4 236 58.9
Carub.0005s0328 Capsella rubella HOM05D006853 ORTHO05D008906 6.2e-69 265.0 271 51.7
Hund25134 Selenicereus undatus HOM05D006853 ORTHO05D008906 6.2e-69 265.0 277 53.8
Thhalv10004778m.g Eutrema salsugineum HOM05D006853 ORTHO05D008906 1.0e-68 264.2 273 52.0
Peaxi162Scf00188g00063 Petunia axillaris HOM05D006853 ORTHO05D008906 1.0e-68 264.2 236 58.9
ECA233G2927 Erigeron canadensis HOM05D006853 ORTHO05D006634 1.4e-68 263.8 240 55.8
Oeu024136.2 Olea europaea HOM05D006853 ORTHO05D008906 1.4e-68 263.8 270 54.1
Sp2g14810 Schrenkiella parvula HOM05D006853 ORTHO05D008906 1.4e-68 263.8 274 53.6
BcaB07g30639 Brassica carinata HOM05D006853 ORTHO05D008906 1.8e-68 263.5 242 55.4
CsaV3_5G018880 Cucumis sativus L. HOM05D006853 ORTHO05D008906 2.3e-68 263.1 265 55.1
BcaB07g30269 Brassica carinata HOM05D006853 ORTHO05D008906 5.2e-68 261.9 270 51.5
ClCG01G007410 Citrullus lanatus HOM05D006853 ORTHO05D008906 5.2e-68 261.9 233 57.9
Sc11g0002760 Simmondsia chinensis HOM05D006853 ORTHO05D008906 6.8e-68 261.5 275 54.2
Aa31LG2G6790 Aethionema arabicum HOM05D006853 ORTHO05D008906 8.9e-68 261.2 275 50.9
AL5G14010 Arabidopsis lyrata HOM05D006853 ORTHO05D008906 1.2e-67 260.8 271 51.3
SalBow8G1387 Salvia bowleyana HOM05D006853 ORTHO05D008906 1.5e-67 260.4 271 52.4
SalBow8G0220 Salvia bowleyana HOM05D006853 ORTHO05D008906 3.4e-67 259.2 271 52.0
MSTRG.7709 Avicennia marina HOM05D006853 ORTHO05D008906 4.4e-67 258.8 273 51.6
Solyc05g010290.3 Solanum lycopersicum HOM05D006853 ORTHO05D008906 1.3e-66 257.3 236 57.2
HanXRQChr08g0214781 Helianthus annuus HOM05D006853 ORTHO05D008906 2.2e-66 256.5 270 53.3
Potri.008G110700 Populus trichocarpa HOM05D006853 ORTHO05D008906 6.4e-66 255.0 278 53.6
PSO541G5551 Papaver somniferum HOM05D006853 ORTHO05D008906 3.2e-65 252.7 270 53.7
Oeu054577.1 Olea europaea HOM05D006853 ORTHO05D008906 1.0e-63 247.7 277 50.9
PSO675G5986 Papaver somniferum HOM05D006853 ORTHO05D008906 1.3e-63 247.3 270 53.0
Nn7g37287 Nelumbo nucifera HOM05D006853 ORTHO05D008906 2.3e-63 246.5 266 53.4
SGA_v2.0_scaffold16G07849 Striga asiatica HOM05D006853 ORTHO05D008906 3.0e-63 246.1 268 53.7
Migut.L01132 Erythranthe guttata HOM05D006853 ORTHO05D006634 5.0e-63 245.4 254 53.5
Oeu054573.1 Olea europaea HOM05D006853 ORTHO05D008906 8.6e-63 244.6 277 50.2
Oeu054575.1 Olea europaea HOM05D006853 ORTHO05D008906 8.6e-63 244.6 277 50.2
THA.LOC104801842 Tarenaya hassleriana HOM05D006853 ORTHO05D008906 3.3e-62 242.7 231 55.0
HanXRQChr15g0469081 Helianthus annuus HOM05D006853 ORTHO05D008906 2.8e-61 239.6 215 58.1
A02p33840 Brassica napus HOM05D006853 ORTHO05D008906 4.4e-59 232.3 276 48.9
BraA02t08402Z Brassica rapa HOM05D006853 ORTHO05D008906 4.4e-59 232.3 280 50.0
Aqoxy5G01341 Aquilegia oxysepala HOM05D006853 ORTHO05D008906 8.3e-58 228.0 227 53.7
Ca_05156_v3 Cicer arietinum L. HOM05D006853 ORTHO05D008906 5.6e-54 215.3 270 49.6
Lalb_Chr17g0341651 Lupinus albus HOM05D006853 ORTHO05D008906 4.7e-53 212.2 268 48.9
unitig_8.g3212 Utricularia gibba HOM05D006853 ORTHO05D008906 6.2e-53 211.8 269 48.3
Medtr5g049260 Medicago truncatula HOM05D006853 ORTHO05D008906 1.1e-52 211.1 268 49.3
Medtr5g049270 Medicago truncatula HOM05D006853 ORTHO05D008906 1.1e-52 211.1 268 49.3
ATR0721G025 Amborella trichopoda HOM05D006853 ORTHO05D008906 3.1e-52 209.5 270 44.8
VMungo1215G2951 Vigna mungo HOM05D006853 ORTHO05D008906 4.0e-52 209.1 263 47.5
Actinidia30174 Actinidia chinensis HOM05D006853 ORTHO05D008906 2.0e-51 206.8 192 57.8
Dinv16569 Davidia involucrata HOM05D000044 ORTHO05D006634 2.6e-51 206.5 219 52.1
SHI15728 Sapria himalayana HOM05D006853 ORTHO05D008906 1.1e-49 201.1 243 49.8
Glyma.01G070150 Glycine max HOM05D006853 ORTHO05D008906 3.2e-49 199.5 246 51.6
Glyma.02G127200 Glycine max HOM05D006853 ORTHO05D008906 5.4e-49 198.7 246 51.2
Phvul.002G082000 Phaseolus vulgaris HOM05D006853 ORTHO05D008906 4.6e-48 195.7 245 49.4
Lj2g0007836 Lotus japonicus HOM05D000044 ORTHO05D006634 2.3e-47 193.4 243 47.7
HPP92_020023 Vanilla planifolia HOM05D006853 ORTHO05D008906 2.1e-45 186.8 241 49.0
SEGI_13208 Sequoiadendron giganteum HOM05D006853 ORTHO05D008906 4.4e-43 179.1 243 44.9
GSVIVG01010168001 Vitis vinifera HOM05D000044 ORTHO05D006634 2.2e-42 176.8 241 43.2
Hma1.2p1_0125F.1_g058490 Hydrangea macrophylla HOM05D006853 ORTHO05D008906 6.4e-42 175.3 214 49.1
arahy.Tifrunner.gnm1.ann1.N8UYM2 Arachis hypogaea HOM05D006853 ORTHO05D008906 3.9e-39 166.0 266 41.7
arahy.Tifrunner.gnm1.ann1.QR8D6Y Arachis hypogaea HOM05D006853 ORTHO05D008906 2.1e-37 160.2 228 44.7
C09p31840 Brassica napus HOM05D006853 ORTHO05D008906 4.5e-35 152.5 197 44.7
BcaC04g21430 Brassica carinata HOM05D006853 ORTHO05D008906 1.7e-34 150.6 197 44.2
Pp3c1_39830 Physcomitrium patens HOM05D006853 ORTHO05D008906 1.1e-33 147.9 229 38.0
SMO164G0046 Selaginella moellendorffii HOM05D006853 ORTHO05D008906 2.8e-29 133.3 218 38.5
Os01g0219000 Oryza sativa ssp. japonica HOM05D006853 ORTHO05D008906 7.1e-25 118.6 246 40.7
AL5G13960 Arabidopsis lyrata HOM05D006853 ORTHO05D008906 1.8e-23 114.0 90 63.3
AagrBONN_evm.TU.Sc2ySwM_368.2648 Anthoceros agrestis HOM05D006853 ORTHO05D008906 2.3e-23 113.6 239 33.5
Zm00001eb119820 Zea mays HOM05D006853 ORTHO05D008906 3.9e-23 112.8 244 38.5
Mapoly0008s0082 Marchantia polymorpha HOM05D006853 ORTHO05D008906 2.8e-21 106.7 249 32.1
CDE03G0412 Ceratophyllum demersum HOM05D001926 ORTHO05D002121 8.1e-21 105.1 165 37.6
Psat2g098640 Pisum sativum HOM05D006853 ORTHO05D008906 3.2e-17 93.2 117 49.6
Psat1g127240 Pisum sativum HOM05D002500 ORTHO05D002587 1.0e-15 88.2 79 58.2
ATR0737G064 Amborella trichopoda HOM05D006853 ORTHO05D008906 2.3e-15 87.0 110 42.7
HanXRQChr12g0364531 Helianthus annuus HOM05D006853 ORTHO05D008906 1.6e-13 80.9 104 44.2
Cre01.g037650 Chlamydomonas reinhardtii HOM05D006853 ORTHO05D008906 5.3e-12 75.9 169 33.1
BraA09t38070Z Brassica rapa HOM05D006853 ORTHO05D008906 1.5e-06 57.8 36 72.2
PSO478G3347 Papaver somniferum HOM05D006853 ORTHO05D008906 1.9e-06 57.4 53 50.9
GSVIVG01017445001 Vitis vinifera HOM05D000518 ORTHO05D001974 4.3e-06 56.2 65 49.2


User provided reference genes

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