Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G0566 Fragaria x ananassa HOM05D002631 ORTHO05D002861 2.2e-114 415.6 205 100.0
FvH4_4g23980 Fragaria vesca HOM05D002631 ORTHO05D002861 8.3e-106 387.1 205 95.1
FAN17G0922 Fragaria x ananassa HOM05D002631 ORTHO05D002861 8.4e-98 360.5 204 91.7
FAN22G1123 Fragaria x ananassa HOM05D002631 ORTHO05D002861 1.4e-97 359.8 204 91.2
RcHm_v2.0_Chr4g0430641 Rosa chinensis HOM05D002631 ORTHO05D002861 3.8e-82 308.5 208 80.8
FAN07G2898 Fragaria x ananassa HOM05D005946 ORTHO05D007340 1.6e-69 266.5 165 84.8
Prupe.1G229000 Prunus persica HOM05D002631 ORTHO05D002861 2.0e-38 163.3 218 47.7
MD16G1117200 Malus domestica HOM05D002631 ORTHO05D002861 6.5e-26 121.7 219 43.8
Potri.008G176300 Populus trichocarpa HOM05D002631 ORTHO05D002861 2.0e-22 110.2 233 32.6
Potri.010G058700 Populus trichocarpa HOM05D002631 ORTHO05D002861 2.0e-22 110.2 232 34.5
Dinv10972 Davidia involucrata HOM05D002631 ORTHO05D002861 4.4e-22 109.0 229 36.7
GSVIVG01010390001 Vitis vinifera HOM05D002631 ORTHO05D002861 2.2e-21 106.7 223 37.2
TAR371G1118 Trochodendron aralioides HOM05D002631 ORTHO05D002861 1.1e-20 104.4 232 36.2
Sabra10G0046900 Salix brachista HOM05D002631 ORTHO05D002861 2.4e-20 103.2 254 31.1
Nn3g16504 Nelumbo nucifera HOM05D002631 ORTHO05D002861 5.9e-19 98.6 237 35.0
Manes.13G018000 Manihot esculenta HOM05D002631 ORTHO05D002861 6.5e-18 95.1 236 33.5
TAR629G0052 Trochodendron aralioides HOM05D002631 ORTHO05D002861 8.6e-18 94.7 231 35.5
COL.COLO4_20357 Corchorus olitorius HOM05D002631 ORTHO05D002861 1.1e-17 94.4 243 33.3
Cfa009334 Carpinus fangiana HOM05D002631 ORTHO05D002861 3.2e-17 92.8 241 32.8
Migut.F00077 Erythranthe guttata HOM05D002631 ORTHO05D002861 1.6e-16 90.5 223 34.1
CSS0020364 Camellia sinensis var. sinensis HOM05D002631 ORTHO05D002861 2.8e-16 89.7 236 30.9
Peaxi162Scf00700g00133 Petunia axillaris HOM05D002631 ORTHO05D002861 2.8e-16 89.7 221 30.3
Ciclev10032698m.g Citrus clementina HOM05D002631 ORTHO05D002861 4.7e-16 89.0 228 32.5
Nitab4.5_0000559g0430 Nicotiana tabacum HOM05D002631 ORTHO05D002861 4.7e-16 89.0 228 32.5
Nn4g22361 Nelumbo nucifera HOM05D002631 ORTHO05D002861 8.0e-16 88.2 245 33.1
Actinidia30886 Actinidia chinensis HOM05D002631 ORTHO05D002861 1.0e-15 87.8 242 31.0
Haze_12389 Corylus avellana HOM05D002631 ORTHO05D002861 1.0e-15 87.8 238 32.8
Duzib251G0117 Durio zibethinus HOM05D002631 ORTHO05D002861 1.0e-15 87.8 226 34.1
Dinv33351 Davidia involucrata HOM05D000172 ORTHO05D000781 1.8e-15 87.0 167 37.1
Prupe.3G303900 Prunus persica HOM05D002631 ORTHO05D002861 2.3e-15 86.7 234 31.6
Actinidia05911 Actinidia chinensis HOM05D002631 ORTHO05D002861 3.0e-15 86.3 232 33.6
Oeu035217.1 Olea europaea HOM05D002631 ORTHO05D002861 3.0e-15 86.3 219 31.5
QL03p053884 Quercus lobata HOM05D002631 ORTHO05D002861 3.0e-15 86.3 232 32.3
Sabra08G0134200 Salix brachista HOM05D002631 ORTHO05D002861 3.0e-15 86.3 239 30.1
Actinidia04441 Actinidia chinensis HOM05D002631 ORTHO05D002861 4.0e-15 85.9 230 32.2
Aqoxy5G03422 Aquilegia oxysepala HOM05D002631 ORTHO05D002861 4.0e-15 85.9 240 31.2
Gohir.A01G154900 Gossypium hirsutum HOM05D002631 ORTHO05D002861 5.2e-15 85.5 211 33.2
Thecc.04G033600 Theobroma cacao HOM05D002631 ORTHO05D002861 5.2e-15 85.5 237 34.2
Cc07_g00670 Coffea canephora HOM05D002631 ORTHO05D002861 8.8e-15 84.7 232 32.3
Sed0025656 Sechium edule HOM05D002631 ORTHO05D002861 8.8e-15 84.7 211 33.6
Duzib147G0551 Durio zibethinus HOM05D002631 ORTHO05D002861 1.2e-14 84.3 234 32.1
Gohir.D01G155000 Gossypium hirsutum HOM05D002631 ORTHO05D002861 1.5e-14 84.0 211 32.7
MBI07_g31942_MAGBIO Magnolia biondii HOM05D002631 ORTHO05D002861 2.0e-14 83.6 246 30.1
Thecc.02G277100 Theobroma cacao HOM05D002631 ORTHO05D002861 2.0e-14 83.6 233 33.0
Hma1.2p1_0279F.1_g112600 Hydrangea macrophylla HOM05D002631 ORTHO05D002861 2.6e-14 83.2 248 29.8
CiPaw.03G053800 Carya illinoinensis HOM05D002631 ORTHO05D002861 3.4e-14 82.8 227 30.0
Haze_14856 Corylus avellana HOM05D002631 ORTHO05D002861 4.4e-14 82.4 258 31.0
Atru.chr11.2298 Acer truncatum HOM05D002631 ORTHO05D002861 5.7e-14 82.0 168 35.7
CANSAT01G0961 Cannabis sativa HOM05D002631 ORTHO05D002861 7.5e-14 81.6 212 31.6
SalBow4G0924 Salvia bowleyana HOM05D002631 ORTHO05D002861 7.5e-14 81.6 220 30.0
SalBow4G2864 Salvia bowleyana HOM05D002631 ORTHO05D002861 1.3e-13 80.9 220 30.0
Duzib264G0548 Durio zibethinus HOM05D002631 ORTHO05D002861 1.7e-13 80.5 237 31.2
Duzib187G0830 Durio zibethinus HOM05D002631 ORTHO05D002861 2.2e-13 80.1 233 29.6
MSTRG.3083 Avicennia marina HOM05D002631 ORTHO05D002861 4.9e-13 79.0 234 29.9
Manes.17G104100 Manihot esculenta HOM05D002631 ORTHO05D002861 4.9e-13 79.0 224 31.7
Nitab4.5_0005161g0010 Nicotiana tabacum HOM05D002631 ORTHO05D002861 4.9e-13 79.0 228 31.1
PGR102G0668 Punica granatum HOM05D002631 ORTHO05D002861 6.3e-13 78.6 221 31.2
TWI56G0933 Tripterygium wilfordii HOM05D002631 ORTHO05D002861 4.1e-12 75.9 219 30.6
Haze_12356 Corylus avellana HOM05D002631 ORTHO05D002861 5.4e-12 75.5 170 35.3
Hma1.2p1_2105F.1_g314170 Hydrangea macrophylla HOM05D002631 ORTHO05D002861 5.4e-12 75.5 242 30.6
PGSC0003DMG400013426 Solanum tuberosum HOM05D002631 ORTHO05D002861 5.4e-12 75.5 215 31.6
Solyc03g005030.3 Solanum lycopersicum HOM05D002631 ORTHO05D002861 7.0e-12 75.1 217 31.3
FAN14G5847 Fragaria x ananassa HOM05D002631 ORTHO05D002861 9.2e-12 74.7 227 31.7
Manes.12G013100 Manihot esculenta HOM05D002631 ORTHO05D002861 9.2e-12 74.7 229 30.6
Oeu013645.3 Olea europaea HOM05D000172 ORTHO05D000781 9.2e-12 74.7 222 33.8
Manes.15G159300 Manihot esculenta HOM05D002631 ORTHO05D002861 1.2e-11 74.3 234 30.3
Duzib268G1177 Durio zibethinus HOM05D002631 ORTHO05D002861 1.6e-11 73.9 234 33.8
Eucgr.B03472 Eucalyptus grandis HOM05D002631 ORTHO05D002861 1.6e-11 73.9 226 33.2
Gohir.D04G077800 Gossypium hirsutum HOM05D002631 ORTHO05D002861 1.6e-11 73.9 236 30.5
Gorai.012G087600 Gossypium raimondii HOM05D002631 ORTHO05D002861 1.6e-11 73.9 236 30.5
MD17G1013900 Malus domestica HOM05D002631 ORTHO05D002861 1.6e-11 73.9 233 30.5
MD09G1013200 Malus domestica HOM05D002631 ORTHO05D002861 2.0e-11 73.6 240 30.4
TWI75G1382 Tripterygium wilfordii HOM05D002631 ORTHO05D002861 2.7e-11 73.2 243 30.0
FvH4_6g53190 Fragaria vesca HOM05D002631 ORTHO05D002861 3.5e-11 72.8 162 37.0
RcHm_v2.0_Chr2g0175231 Rosa chinensis HOM05D002631 ORTHO05D002861 3.5e-11 72.8 233 29.2
Ca_04425_v3 Cicer arietinum L. HOM05D002631 ORTHO05D002861 4.5e-11 72.4 234 30.8
FAN09G0528 Fragaria x ananassa HOM05D002631 ORTHO05D002861 4.5e-11 72.4 208 31.7
Lj2g0026031 Lotus japonicus HOM05D002631 ORTHO05D002861 4.5e-11 72.4 149 33.6
vmacro18333 Vaccinium macrocarpon HOM05D002631 ORTHO05D002861 4.5e-11 72.4 271 26.6
Gohir.D09G035700 Gossypium hirsutum HOM05D002631 ORTHO05D002861 5.9e-11 72.0 234 31.2
Gorai.006G040600 Gossypium raimondii HOM05D002631 ORTHO05D002861 5.9e-11 72.0 234 31.2
CiPaw.04G035400 Carya illinoinensis HOM05D002631 ORTHO05D002861 7.8e-11 71.6 241 27.8
TWI12G0788 Tripterygium wilfordii HOM05D002631 ORTHO05D002861 1.3e-10 70.9 216 32.4
CAN.G1751.2 Capsicum annuum HOM05D002631 ORTHO05D002861 2.3e-10 70.1 220 30.9
Cfa007243 Carpinus fangiana HOM05D002631 ORTHO05D002861 2.3e-10 70.1 238 28.6
Migut.K01455 Erythranthe guttata HOM05D002631 ORTHO05D002861 2.3e-10 70.1 225 27.6
FAN05G0255 Fragaria x ananassa HOM05D002631 ORTHO05D002861 2.3e-10 70.1 227 30.0
Rhsim08G0043900 Rhododendron simsii HOM05D002631 ORTHO05D002861 2.3e-10 70.1 279 26.5
TPR.G7520 Trifolium pratense HOM05D002631 ORTHO05D002861 2.3e-10 70.1 232 30.2
Gorai.002G191900 Gossypium raimondii HOM05D002631 ORTHO05D002861 2.9e-10 69.7 147 35.4
MSTRG.24087 Avicennia marina HOM05D002631 ORTHO05D002861 3.8e-10 69.3 224 32.1
Medtr7g029620 Medicago truncatula HOM05D002631 ORTHO05D002861 3.8e-10 69.3 221 29.9
Gohir.A09G034900 Gossypium hirsutum HOM05D002631 ORTHO05D002861 5.0e-10 68.9 223 31.8
CiPaw.05G112100 Carya illinoinensis HOM05D002631 ORTHO05D002861 6.6e-10 68.6 177 35.6
MBI07_g46198_MAGBIO Magnolia biondii HOM05D002631 ORTHO05D002861 6.6e-10 68.6 210 30.0
Lj1g0010837 Lotus japonicus HOM05D002631 ORTHO05D002861 1.1e-09 67.8 227 29.5
PSO478G2931 Papaver somniferum HOM05D002631 ORTHO05D002861 1.1e-09 67.8 256 27.7
Glyma.05G076300 Glycine max HOM05D002631 ORTHO05D002861 1.5e-09 67.4 216 28.2
Gorai.001G269900 Gossypium raimondii HOM05D002631 ORTHO05D002861 1.5e-09 67.4 239 29.7
Medtr6g023580 Medicago truncatula HOM05D002631 ORTHO05D002861 1.5e-09 67.4 228 28.1
Gohir.A05G339300 Gossypium hirsutum HOM05D002631 ORTHO05D002861 1.9e-09 67.0 235 29.4
Sopen03g001040 Solanum pennellii HOM05D002631 ORTHO05D002861 1.9e-09 67.0 216 30.1
CANSAT64G0464 Cannabis sativa HOM05D002631 ORTHO05D002861 2.5e-09 66.6 240 29.6
Oeu011958.2 Olea europaea HOM05D002631 ORTHO05D002861 2.5e-09 66.6 246 29.7
Potri.001G332500 Populus trichocarpa HOM05D002631 ORTHO05D002861 2.5e-09 66.6 175 33.1
Rhsim10G0007400 Rhododendron simsii HOM05D002631 ORTHO05D002861 4.3e-09 65.9 241 27.4
Ciclev10016522m.g Citrus clementina HOM05D002631 ORTHO05D002861 5.6e-09 65.5 242 29.3
QL03p054083 Quercus lobata HOM05D002631 ORTHO05D002861 5.6e-09 65.5 163 32.5
Glyma.19G074200 Glycine max HOM05D002631 ORTHO05D002861 7.3e-09 65.1 185 32.4
Gohir.A07G227200 Gossypium hirsutum HOM05D002631 ORTHO05D002861 7.3e-09 65.1 236 29.7
Gohir.D07G234300 Gossypium hirsutum HOM05D002631 ORTHO05D002861 7.3e-09 65.1 236 29.7
Actinidia36186 Actinidia chinensis HOM05D002631 ORTHO05D002861 9.5e-09 64.7 231 28.1
FAN02G3740 Fragaria x ananassa HOM05D002631 ORTHO05D002861 9.5e-09 64.7 162 34.6
Psat1g085600 Pisum sativum HOM05D002631 ORTHO05D002861 9.5e-09 64.7 195 28.7
ClCG11G013790 Citrullus lanatus HOM05D002631 ORTHO05D002861 1.2e-08 64.3 219 29.2
MELO3C011878.2 Cucumis melo HOM05D002631 ORTHO05D002861 1.2e-08 64.3 219 27.4
TAR371G0695 Trochodendron aralioides HOM05D002631 ORTHO05D002861 1.6e-08 63.9 134 39.6
GSVIVG01001809001 Vitis vinifera HOM05D002631 ORTHO05D002861 1.6e-08 63.9 143 31.5
CsaV3_5G030380 Cucumis sativus L. HOM05D002631 ORTHO05D002861 2.1e-08 63.5 219 27.9
MELO3C014870.2 Cucumis melo HOM05D002631 ORTHO05D002861 2.8e-08 63.2 229 27.1
QL03p053810 Quercus lobata HOM05D002631 ORTHO05D002861 2.8e-08 63.2 161 32.9
Sed0001821 Sechium edule HOM05D002631 ORTHO05D002861 4.7e-08 62.4 220 26.8
SGA_v2.0_scaffold154G37166 Striga asiatica HOM05D002631 ORTHO05D002861 4.7e-08 62.4 228 26.8
Glyma.16G058500 Glycine max HOM05D002631 ORTHO05D002861 6.1e-08 62.0 168 31.0
PSO017G1183 Papaver somniferum HOM05D002631 ORTHO05D002861 6.1e-08 62.0 238 26.5
PGR083G1199 Punica granatum HOM05D002631 ORTHO05D002861 6.1e-08 62.0 195 29.2
QL02p071781 Quercus lobata HOM05D002631 ORTHO05D002861 8.0e-08 61.6 188 29.8
Gohir.A12G148400 Gossypium hirsutum HOM05D032798 ORTHO05D036333 1.0e-07 61.2 187 32.1
CDE05G3573 Ceratophyllum demersum HOM05D002631 ORTHO05D002861 1.4e-07 60.8 226 26.5
Sabra16G0213400 Salix brachista HOM05D002631 ORTHO05D002861 1.4e-07 60.8 174 31.0
THA.LOC104825613 Tarenaya hassleriana HOM05D002631 ORTHO05D002861 1.8e-07 60.5 149 33.6
Phvul.001G095300 Phaseolus vulgaris HOM05D002631 ORTHO05D002861 3.0e-07 59.7 168 32.1
ClCG05G013370 Citrullus lanatus HOM05D002631 ORTHO05D002861 4.0e-07 59.3 195 28.7
Hma1.2p1_1278F.1_g272420 Hydrangea macrophylla HOM05D002631 ORTHO05D002861 5.2e-07 58.9 167 31.1
VMungo0464G1570 Vigna mungo HOM05D002631 ORTHO05D002861 5.2e-07 58.9 220 28.2
HanXRQChr17g0550131 Helianthus annuus HOM05D002631 ORTHO05D002861 6.8e-07 58.5 147 35.4
Psat7g264080 Pisum sativum HOM05D002631 ORTHO05D002861 6.8e-07 58.5 210 26.7
arahy.Tifrunner.gnm1.ann1.Q8Q4RG Arachis hypogaea HOM05D002631 ORTHO05D002861 8.9e-07 58.2 150 30.7
CDE05G2656 Ceratophyllum demersum HOM05D002631 ORTHO05D002861 8.9e-07 58.2 233 25.8
unitig_21.g20478 Utricularia gibba HOM05D001287 ORTHO05D001226 8.9e-07 58.2 223 27.4
Lalb_Chr21g0317531 Lupinus albus HOM05D002631 ORTHO05D002861 1.2e-06 57.8 228 27.6
MSTRG.15564 Avicennia marina HOM05D002631 ORTHO05D002861 1.5e-06 57.4 238 26.9
Aqoxy3G01502 Aquilegia oxysepala HOM05D002631 ORTHO05D002861 2.6e-06 56.6 170 31.2
Lj7A608T54 Lonicera japonica HOM05D002631 ORTHO05D002861 2.6e-06 56.6 167 28.7
CsaV3_2G034190 Cucumis sativus L. HOM05D002631 ORTHO05D002861 4.4e-06 55.8 221 25.8
Phvul.004G055100 Phaseolus vulgaris HOM05D002631 ORTHO05D002861 4.4e-06 55.8 220 28.2
Lalb_Chr14g0363261 Lupinus albus HOM05D002631 ORTHO05D002861 5.7e-06 55.5 165 28.5
TPR.G38258 Trifolium pratense HOM05D002631 ORTHO05D002861 5.7e-06 55.5 154 31.8
C03p39350 Brassica napus HOM05D002631 ORTHO05D002861 7.5e-06 55.1 214 26.6
Lsat_1_v5_gn_2_94100 Lactuca sativa HOM05D002631 ORTHO05D002861 9.8e-06 54.7 168 29.2


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