Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G0499 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1938.7 977 100.0
FAN12G2270 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1938.7 977 100.0
FAN17G1489 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1922.5 977 99.1
FvH4_4g16670 Fragaria vesca HOM05D003956 ORTHO05D004850 0.0e+00 1909.8 977 98.9
FAN07G1911 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1897.1 977 98.2
FAN22G1243 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1887.5 977 97.9
RcHm_v2.0_Chr4g0420131 Rosa chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1795.0 973 93.0
Prupe.1G146600 Prunus persica HOM05D003956 ORTHO05D004850 0.0e+00 1622.8 982 84.2
MD13G1177500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1592.0 1002 81.1
MD16G1179500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1589.7 975 83.1
CANSAT78G1736 Cannabis sativa HOM05D003956 ORTHO05D004850 0.0e+00 1584.3 979 81.2
Manes.03G188300 Manihot esculenta HOM05D003956 ORTHO05D004850 0.0e+00 1579.3 976 82.1
QL06p006231 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1573.9 987 81.1
TAR365G1004 Trochodendron aralioides HOM05D003956 ORTHO05D004850 0.0e+00 1573.1 989 80.9
Cfa015539 Carpinus fangiana HOM05D003956 ORTHO05D004850 0.0e+00 1565.4 933 85.0
CiPaw.01G156600 Carya illinoinensis HOM05D003956 ORTHO05D004850 0.0e+00 1564.7 980 81.1
Dinv44455 Davidia involucrata HOM05D003956 ORTHO05D004850 0.0e+00 1564.3 980 81.1
TWI09G0935 Tripterygium wilfordii HOM05D003956 ORTHO05D004850 0.0e+00 1564.3 973 81.7
Atru.chr4.2704 Acer truncatum HOM05D003956 ORTHO05D004850 0.0e+00 1563.9 980 80.8
Rhsim04G0213100 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1563.9 987 80.7
Duzib212G0153 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1560.0 989 80.2
GSVIVG01017850001 Vitis vinifera HOM05D003956 ORTHO05D004850 0.0e+00 1557.3 982 80.7
Peaxi162Scf00095g00414 Petunia axillaris HOM05D003956 ORTHO05D004850 0.0e+00 1556.6 983 80.5
Gorai.011G181800 Gossypium raimondii HOM05D003956 ORTHO05D004850 0.0e+00 1554.7 993 79.7
CsaV3_3G013930 Cucumis sativus L. HOM05D003956 ORTHO05D004850 0.0e+00 1553.1 985 79.8
Gohir.D10G162900 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1550.8 992 79.7
PGR004G0287 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1550.4 916 85.0
Actinidia23451 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1549.6 987 79.8
Haze_01011 Corylus avellana HOM05D003956 ORTHO05D004850 0.0e+00 1546.6 933 84.1
Sed0002405 Sechium edule HOM05D003956 ORTHO05D004850 0.0e+00 1545.4 979 79.8
Actinidia40209 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1544.6 988 79.4
Eucgr.H03642 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1536.9 977 79.2
Potri.010G027800 Populus trichocarpa HOM05D003956 ORTHO05D004850 0.0e+00 1536.9 985 80.1
Nn3g21184 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1535.0 985 78.8
Glyma.07G253700 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1534.6 974 79.6
MD13G1177400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1534.2 883 86.0
Nitab4.5_0000059g0230 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1530.8 995 78.6
CAN.G889.10 Capsicum annuum HOM05D003956 ORTHO05D004850 0.0e+00 1529.2 983 79.5
Ciclev10006837m.g Citrus clementina HOM05D003956 ORTHO05D004850 0.0e+00 1529.2 922 83.2
Nitab4.5_0010477g0010 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1523.8 1009 77.2
Sopen01g032260 Solanum pennellii HOM05D003956 ORTHO05D004850 0.0e+00 1523.8 982 78.8
CSS0033563 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1521.1 882 85.9
Aqoxy2G03183 Aquilegia oxysepala HOM05D003956 ORTHO05D004850 0.0e+00 1520.4 985 78.8
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 0.0e+00 1520.4 976 78.7
ECA240G3955 Erigeron canadensis HOM05D003956 ORTHO05D004850 0.0e+00 1520.0 898 83.7
Migut.G00282 Erythranthe guttata HOM05D003956 ORTHO05D004850 0.0e+00 1517.3 894 84.0
Glyma.17G020600 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1516.9 976 78.7
Solyc01g080460.3 Solanum lycopersicum HOM05D003956 ORTHO05D004850 0.0e+00 1516.9 981 78.7
Lj4g0014830 Lotus japonicus HOM05D003956 ORTHO05D004850 0.0e+00 1515.0 988 77.5
Cc03_g02730 Coffea canephora HOM05D003956 ORTHO05D004850 0.0e+00 1512.7 908 82.6
MD16G1179300 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1510.0 869 86.9
TPR.G28132 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1509.6 972 78.1
Aa31LG9G1910 Aethionema arabicum HOM05D003956 ORTHO05D004850 0.0e+00 1505.7 971 77.7
MD16G1179400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1504.2 867 86.7
Sabra10G0012900 Salix brachista HOM05D003956 ORTHO05D004850 0.0e+00 1503.4 987 78.2
Cpa.g.sc16.74 Carica papaya HOM05D003956 ORTHO05D004850 0.0e+00 1502.3 900 83.4
THA.LOC104820228 Tarenaya hassleriana HOM05D003956 ORTHO05D004850 0.0e+00 1501.5 899 82.8
Lalb_Chr13g0303991 Lupinus albus HOM05D003956 ORTHO05D004850 0.0e+00 1496.5 904 81.6
VMungo1215G0684 Vigna mungo HOM05D003956 ORTHO05D004850 0.0e+00 1495.7 972 77.7
Hund20662 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1494.6 911 81.6
AT4G15530 Arabidopsis thaliana HOM05D003956 ORTHO05D004850 0.0e+00 1492.6 969 77.3
MELO3C006585.2 Cucumis melo HOM05D003956 ORTHO05D004850 0.0e+00 1492.6 853 86.4
Phvul.003G098200 Phaseolus vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1491.1 920 80.8
AL7G39990 Arabidopsis lyrata HOM05D003956 ORTHO05D004850 0.0e+00 1490.7 968 77.3
QL06p005921 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1486.5 883 83.4
Thhalv10024330m.g Eutrema salsugineum HOM05D003956 ORTHO05D004850 0.0e+00 1484.5 967 77.0
PSO302G0065 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1484.5 921 79.8
Sp7g13780 Schrenkiella parvula HOM05D003956 ORTHO05D004850 0.0e+00 1483.0 974 76.5
Lsat_1_v5_gn_5_51481 Lactuca sativa HOM05D003956 ORTHO05D004850 0.0e+00 1482.6 883 83.1
PSO170G3340 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1482.2 941 78.5
Lj3C806G12 Lonicera japonica HOM05D003956 ORTHO05D004850 0.0e+00 1480.7 985 77.1
BcaC06g32940 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1479.5 968 76.9
Duzib151G0049 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1477.6 950 78.6
Nn4g26122 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1475.7 883 82.6
ATR0626G228 Amborella trichopoda HOM05D003956 ORTHO05D004850 0.0e+00 1475.3 888 81.5
MSTRG.10031 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1474.5 883 82.3
CARHR222330 Cardamine hirsuta HOM05D003956 ORTHO05D004850 0.0e+00 1474.1 900 80.9
C07p47210 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1473.8 967 76.4
A01p22040 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1473.4 900 80.9
BraA01t02110Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1473.4 900 80.9
BolC7t45243H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1473.0 967 76.3
BraA03t14011Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1472.6 967 76.3
Thecc.04G272600 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1472.2 944 78.9
BcaNung00266 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1471.8 909 80.0
C01p27430 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1471.8 900 80.6
Psat0ss7919g0200 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1471.8 867 83.6
MSTRG.10030 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1468.8 883 81.7
arahy.Tifrunner.gnm1.ann1.EQKV61 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1466.1 1005 75.0
BolC1t02682H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1460.7 907 79.8
Hma1.2p1_0511F.1_g169230 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1457.2 890 82.6
SalBow2G1708 Salvia bowleyana HOM05D003956 ORTHO05D004850 0.0e+00 1455.3 881 81.7
A03p49170 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1454.9 956 76.2
BcaC09g50248 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1451.8 883 81.1
CDE08G0632 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1451.8 885 79.9
PGSC0003DMG400032107 Solanum tuberosum HOM05D003956 ORTHO05D004850 0.0e+00 1449.9 853 84.3
Sc25g0004550 Simmondsia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1449.5 867 82.8
DCAR_023283 Daucus carota HOM05D003956 ORTHO05D004850 0.0e+00 1449.1 914 79.8
Os05g0405000 Oryza sativa ssp. japonica HOM05D003956 ORTHO05D004850 0.0e+00 1449.1 885 80.2
Duzib151G0209 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1446.8 882 81.0
Thecc.04G272800 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1446.0 883 81.2
arahy.Tifrunner.gnm1.ann1.YQ8C5N Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1442.6 863 82.9
SGA_v2.0_scaffold142G35643 Striga asiatica HOM05D003956 ORTHO05D004850 0.0e+00 1441.0 896 80.5
Zm00001eb349810 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1438.7 899 78.6
Carub.0007s2635 Capsella rubella HOM05D003956 ORTHO05D004850 0.0e+00 1428.3 865 81.4
ClCG05G005590 Citrullus lanatus HOM05D003956 ORTHO05D004850 0.0e+00 1424.8 960 76.2
CDE02G0811 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1420.2 902 77.6
arahy.Tifrunner.gnm1.ann1.I3NY02 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1417.9 912 77.7
vmacro08238 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1415.6 1104 68.3
Ah.11g043140 Amaranthus hybridus HOM05D003956 ORTHO05D004850 0.0e+00 1405.6 964 74.8
Hund19586 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1402.5 853 80.3
EL10Ac1g01820 Beta vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1394.4 975 73.8
AagrBONN_evm.TU.Sc2ySwM_228.3276 Anthoceros agrestis HOM05D003956 ORTHO05D004850 0.0e+00 1389.8 893 75.9
SMO351G0542 Selaginella moellendorffii HOM05D003956 ORTHO05D004850 0.0e+00 1389.8 885 76.8
Mapoly0009s0124 Marchantia polymorpha HOM05D003956 ORTHO05D004850 0.0e+00 1385.5 889 76.6
PGR031G3666 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1377.1 875 77.8
Pp3c5_22540 Physcomitrium patens HOM05D003956 ORTHO05D004850 0.0e+00 1375.9 889 76.5
Rhsim02G0016700 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1357.8 892 77.2
Oeu032695.1 Olea europaea HOM05D003956 ORTHO05D004850 0.0e+00 1342.0 782 84.3
unitig_26.g8936 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1338.2 882 76.4
Actinidia32373 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1336.6 913 75.1
Eucgr.B01186 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1333.5 833 78.6
Psat4g028880 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1328.2 823 78.6
arahy.Tifrunner.gnm1.ann1.DC6B04 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1326.2 912 73.8
CSS0013368 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1315.1 813 81.3
CSS0018237 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1285.8 893 75.0
Hma1.2p1_2025F.1_g311530 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1281.9 890 75.4
Gohir.A10G105700 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1269.6 836 77.5
vmacro15287 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1242.3 885 72.2
Zm00001eb287770 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1217.2 729 81.2
BcaC09g50243 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1199.5 789 76.2
TPR.G28133 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1186.8 882 69.0
MCO12G211 Micromonas commoda HOM05D003956 ORTHO05D004850 0.0e+00 1182.5 867 66.7
Cre17.g734548 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 0.0e+00 1173.3 885 66.1
unitig_749.g14056 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1087.8 631 83.7
Cre10.g424750 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 2.7e-303 1045.4 893 59.7
Migut.G00280 Erythranthe guttata HOM05D003956 ORTHO05D004850 8.1e-300 1033.9 580 86.0
Medtr4g118350 Medicago truncatula HOM05D003956 ORTHO05D004850 2.3e-270 936.0 649 74.0
MCO01G687 Micromonas commoda HOM05D003956 ORTHO05D004850 1.7e-257 893.3 918 53.3
AUR62034950 Chenopodium quinoa HOM05D003956 ORTHO05D004850 8.9e-214 748.0 556 70.3
AUR62035455 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.8e-211 740.3 532 72.4
AUR62035456 Chenopodium quinoa HOM05D003956 ORTHO05D004850 2.4e-211 740.0 503 75.3
AUR62034949 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.5e-189 667.5 449 74.8
HanXRQChr03g0080571 Helianthus annuus HOM05D003956 ORTHO05D004850 3.9e-185 652.9 419 79.5
CBR_g50184 Chara braunii HOM05D003956 ORTHO05D004850 3.1e-182 643.3 754 48.7
SGA_v2.0_scaffold86G26866 Striga asiatica HOM05D003956 ORTHO05D004850 7.4e-160 568.9 467 64.5
BcaC06g33414 Brassica carinata HOM05D003956 ORTHO05D004850 9.6e-160 568.5 335 83.6
Medtr4g118355 Medicago truncatula HOM05D003956 ORTHO05D004850 5.7e-136 489.6 295 81.7
SGA_v2.0_scaffold86G26865 Striga asiatica HOM05D003956 ORTHO05D004850 5.0e-132 476.5 391 62.7
AUR62034328 Chenopodium quinoa HOM05D003956 ORTHO05D004850 3.1e-110 404.1 422 53.6
arahy.Tifrunner.gnm1.ann1.9WT78J Arachis hypogaea HOM05D003956 ORTHO05D004850 1.5e-99 368.6 318 61.0
HanXRQChr16g0518081 Helianthus annuus HOM05D003956 ORTHO05D004850 1.6e-90 338.6 218 77.1
arahy.Tifrunner.gnm1.ann1.HZTZ4X Arachis hypogaea HOM05D003956 ORTHO05D004850 3.2e-86 324.3 280 61.4
arahy.Tifrunner.gnm1.ann1.7LSJ4G Arachis hypogaea HOM05D003956 ORTHO05D004850 2.6e-64 251.5 227 60.4
arahy.Tifrunner.gnm1.ann1.989M5Y Arachis hypogaea HOM05D003956 ORTHO05D004850 5.1e-60 237.3 216 56.9
unitig_749.g14057 Utricularia gibba HOM05D003956 ORTHO05D004850 6.7e-52 210.3 161 67.1
AagrBONN_evm.TU.Sc2ySwM_362.937 Anthoceros agrestis HOM05D003956 ORTHO05D004850 7.6e-48 196.8 119 77.3
arahy.Tifrunner.gnm1.ann1.S9XVUY Arachis hypogaea HOM05D003956 ORTHO05D004850 2.0e-40 172.2 268 41.4
Pp3c6_6540 Physcomitrium patens HOM05D003956 ORTHO05D004850 2.1e-37 162.2 112 71.4
BcaC09g50244 Brassica carinata HOM05D003956 ORTHO05D004850 1.4e-33 149.4 85 83.5
arahy.Tifrunner.gnm1.ann1.LGH8AH Arachis hypogaea HOM05D003956 ORTHO05D004850 5.5e-30 137.5 83 77.1
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 3.9e-28 131.3 90 67.8
GSVIVG01018502001 Vitis vinifera HOM05D003956 ORTHO05D004850 2.4e-25 122.1 91 71.4
Pp3s196_40 Physcomitrium patens HOM05D003956 ORTHO05D044360 5.9e-24 117.5 449 27.2
arahy.Tifrunner.gnm1.ann1.G5444S Arachis hypogaea HOM05D003956 ORTHO05D004850 1.4e-22 112.8 95 62.1
QL06p005983 Quercus lobata HOM05D003956 ORTHO05D004850 1.6e-21 109.4 140 48.6
TPR.G26738 Trifolium pratense HOM05D003956 ORTHO05D000576 1.7e-18 99.4 56 78.6
TPR.G35464 Trifolium pratense HOM05D003956 ORTHO05D004850 2.9e-15 88.6 60 65.0
MBI15_g32557_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 1.8e-12 79.3 44 86.4
arahy.Tifrunner.gnm1.ann1.V4Y3U4 Arachis hypogaea HOM05D003956 ORTHO05D004850 2.8e-10 72.0 49 71.4
arahy.Tifrunner.gnm1.ann1.57CL3B Arachis hypogaea HOM05D003956 ORTHO05D004850 4.8e-10 71.2 46 73.9
SGA_v2.0_scaffold86G26869 Striga asiatica HOM05D000924 ORTHO05D001209 2.4e-09 68.9 145 33.8
HanXRQChr09g0261911 Helianthus annuus HOM05D000495 ORTHO05D000357 4.1e-09 68.2 43 74.4
Nn8g40271 Nelumbo nucifera HOM05D001541 ORTHO05D001465 3.5e-08 65.1 101 40.6
Pp3c5_22980 Physcomitrium patens HOM05D003956 ORTHO05D004850 4.5e-08 64.7 43 69.8
arahy.Tifrunner.gnm1.ann1.GGZS5I Arachis hypogaea HOM05D003956 ORTHO05D004850 5.0e-07 61.2 56 58.9


User provided reference genes

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