Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G0428 Fragaria x ananassa HOM05D003615 ORTHO05D004858 0.0e+00 2033.8 1039 100.0
FAN22G0583 Fragaria x ananassa HOM05D003615 ORTHO05D004858 0.0e+00 1528.1 1078 77.3
FAN17G0861 Fragaria x ananassa HOM05D003615 ORTHO05D004858 0.0e+00 1104.0 726 81.1
FvH4_4g34711 Fragaria vesca HOM05D003615 ORTHO05D004858 3.8e-215 752.7 552 75.5
FAN07G0212 Fragaria x ananassa HOM05D003615 ORTHO05D022686 6.8e-180 635.6 657 59.4
FvH4_4g34710 Fragaria vesca HOM05D003615 ORTHO05D004858 5.6e-174 615.9 315 99.7
FAN17G0045 Fragaria x ananassa HOM05D003615 ORTHO05D004858 2.9e-170 603.6 541 67.7
RcHm_v2.0_Chr4g0444081 Rosa chinensis HOM05D003615 ORTHO05D004858 6.0e-144 516.2 316 85.4
FAN17G1254 Fragaria x ananassa HOM05D003615 ORTHO05D022686 5.0e-98 363.6 281 73.7
Prupe.1G255400 Prunus persica HOM05D003615 ORTHO05D004858 2.8e-93 347.8 313 59.1
Duzib268G1044 Durio zibethinus HOM05D003615 ORTHO05D004858 6.4e-69 266.9 318 49.1
Haze_12144 Corylus avellana HOM05D003615 ORTHO05D004858 1.2e-64 252.7 333 45.9
QL03p061743 Quercus lobata HOM05D003615 ORTHO05D004858 1.6e-64 252.3 316 46.8
Cfa009107 Carpinus fangiana HOM05D003615 ORTHO05D004858 2.0e-62 245.4 330 45.5
COL.COLO4_36979 Corchorus olitorius HOM05D003615 ORTHO05D004858 2.6e-62 245.0 296 47.6
QL03p061724 Quercus lobata HOM05D003615 ORTHO05D004858 2.2e-61 241.9 368 42.4
QL03p061749 Quercus lobata HOM05D003615 ORTHO05D004858 8.3e-61 240.0 333 43.2
Atru.chr11.2003 Acer truncatum HOM05D003615 ORTHO05D004858 7.1e-60 236.9 322 46.6
CiPaw.05G146700 Carya illinoinensis HOM05D003615 ORTHO05D004858 2.5e-57 228.4 308 45.1
Duzib251G0695 Durio zibethinus HOM05D003615 ORTHO05D004858 2.1e-56 225.3 321 43.6
Prupe.1G255700 Prunus persica HOM05D003615 ORTHO05D004858 5.2e-55 220.7 331 42.6
TAR374G0689 Trochodendron aralioides HOM05D003615 ORTHO05D004858 6.4e-53 213.8 323 43.3
MD16G1090300 Malus domestica HOM05D003615 ORTHO05D015110 1.2e-51 209.5 292 44.2
TAR629G1076 Trochodendron aralioides HOM05D003615 ORTHO05D004858 2.3e-50 205.3 328 40.2
VMungo0251G2176 Vigna mungo HOM05D003615 ORTHO05D004858 1.1e-49 203.0 328 39.0
TAR629G2286 Trochodendron aralioides HOM05D003615 ORTHO05D004858 7.3e-49 200.3 328 39.9
Duzib268G1684 Durio zibethinus HOM05D003615 ORTHO05D004858 2.8e-48 198.4 358 37.2
Medtr8g063930 Medicago truncatula HOM05D003615 ORTHO05D004858 1.4e-47 196.1 323 40.2
Prupe.1G255600 Prunus persica HOM05D003615 ORTHO05D004858 2.4e-47 195.3 308 40.3
MD16G1090600 Malus domestica HOM05D003615 ORTHO05D004858 3.4e-46 191.4 324 37.7
Lj4g0013299 Lotus japonicus HOM05D003615 ORTHO05D004858 4.4e-46 191.0 341 38.1
Phvul.003G052700 Phaseolus vulgaris HOM05D003615 ORTHO05D004858 7.6e-46 190.3 318 40.9
Glyma.08G134200 Glycine max HOM05D003615 ORTHO05D004858 9.9e-46 189.9 329 38.3
Aqoxy3G03028 Aquilegia oxysepala HOM05D003615 ORTHO05D004858 1.3e-45 189.5 341 37.8
Glyma.18G137000 Glycine max HOM05D003615 ORTHO05D004858 1.3e-45 189.5 332 38.9
MD16G1090400 Malus domestica HOM05D003615 ORTHO05D015110 1.3e-45 189.5 292 41.4
Psat4g124720 Pisum sativum HOM05D003615 ORTHO05D004858 3.8e-45 188.0 317 38.2
FAN22G1692 Fragaria x ananassa HOM05D003615 ORTHO05D004858 4.9e-45 187.6 323 39.6
CANSAT01G1820 Cannabis sativa HOM05D003615 ORTHO05D004858 1.9e-44 185.7 303 39.9
CiPaw.06G074200 Carya illinoinensis HOM05D003615 ORTHO05D004858 1.9e-44 185.7 331 37.5
FvH4_4g34740 Fragaria vesca HOM05D003615 ORTHO05D004858 1.9e-44 185.7 319 39.5
RcHm_v2.0_Chr4g0444101 Rosa chinensis HOM05D003615 ORTHO05D004858 2.1e-43 182.2 325 39.7
VMungo0251G0576 Vigna mungo HOM05D003615 ORTHO05D004858 2.7e-43 181.8 316 37.3
Thecc.02G244900 Theobroma cacao HOM05D003615 ORTHO05D004858 3.5e-43 181.4 333 36.9
FAN02G2149 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.0e-42 179.9 315 40.3
FAN12G2508 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.7e-42 179.1 321 38.6
Gorai.012G171300 Gossypium raimondii HOM05D003615 ORTHO05D004858 2.3e-42 178.7 306 38.2
MD13G1090000 Malus domestica HOM05D003615 ORTHO05D004858 3.0e-42 178.3 326 35.9
FvH4_4g34730 Fragaria vesca HOM05D003615 ORTHO05D022686 5.1e-42 177.6 300 40.0
Lj4g0014300 Lotus japonicus HOM05D003615 ORTHO05D004858 6.6e-42 177.2 336 37.8
Rhsim12G0121500 Rhododendron simsii HOM05D002725 ORTHO05D003279 8.7e-42 176.8 294 38.1
TPR.G29246 Trifolium pratense HOM05D003615 ORTHO05D004858 8.7e-42 176.8 318 36.5
FvH4_6g20500 Fragaria vesca HOM05D003615 ORTHO05D004858 1.1e-41 176.4 324 37.0
FAN07G2164 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.5e-41 176.0 325 39.1
Gohir.D04G178200 Gossypium hirsutum HOM05D003615 ORTHO05D004858 1.5e-41 176.0 306 38.2
Lj4g0011563 Lotus japonicus HOM05D003615 ORTHO05D004858 1.5e-41 176.0 336 37.2
Gohir.A04G135100 Gossypium hirsutum HOM05D003615 ORTHO05D004858 4.3e-41 174.5 334 35.3
FAN16G0215 Fragaria x ananassa HOM05D003615 ORTHO05D004858 2.8e-40 171.8 325 39.1
arahy.Tifrunner.gnm1.ann1.1EVC3W Arachis hypogaea HOM05D003615 ORTHO05D004858 3.6e-40 171.4 330 37.6
arahy.Tifrunner.gnm1.ann1.2199FB Arachis hypogaea HOM05D003615 ORTHO05D004858 3.6e-40 171.4 338 37.0
Psat7g055960 Pisum sativum HOM05D003615 ORTHO05D004858 3.6e-40 171.4 330 37.9
Hma1.2p1_0697F.1_g204790 Hydrangea macrophylla HOM05D003615 ORTHO05D004858 6.2e-40 170.6 318 35.5
RcHm_v2.0_Chr3g0476381 Rosa chinensis HOM05D003615 ORTHO05D004858 6.2e-40 170.6 319 36.4
Phvul.002G257500 Phaseolus vulgaris HOM05D003615 ORTHO05D004858 3.1e-39 168.3 286 37.4
Nn4g22826 Nelumbo nucifera HOM05D003615 ORTHO05D004858 5.3e-39 167.5 325 36.3
TPR.G6213 Trifolium pratense HOM05D003615 ORTHO05D004858 7.6e-38 163.7 346 35.8
Gorai.012G060600 Gossypium raimondii HOM05D003615 ORTHO05D004858 1.3e-37 162.9 321 36.1
Actinidia15034 Actinidia chinensis HOM05D003615 ORTHO05D004858 3.8e-37 161.4 206 47.1
Eucgr.B03351 Eucalyptus grandis HOM05D003615 ORTHO05D004858 3.8e-37 161.4 327 33.9
Eucgr.B03352 Eucalyptus grandis HOM05D003615 ORTHO05D004858 4.9e-37 161.0 328 34.8
Thecc.04G007200 Theobroma cacao HOM05D003615 ORTHO05D004858 6.4e-37 160.6 316 35.1
Gohir.D04G054000 Gossypium hirsutum HOM05D003615 ORTHO05D004858 8.4e-37 160.2 321 36.4
Gohir.A05G360200 Gossypium hirsutum HOM05D003615 ORTHO05D004858 2.4e-36 158.7 321 35.8
RcHm_v2.0_Chr4g0444091 Rosa chinensis HOM05D003615 ORTHO05D022686 2.4e-36 158.7 298 38.6
GSVIVG01004279001 Vitis vinifera HOM05D003615 ORTHO05D004858 5.4e-36 157.5 321 34.3
CiPaw.06G074300 Carya illinoinensis HOM05D003615 ORTHO05D004858 1.6e-35 156.0 332 36.1
Duzib147G1418 Durio zibethinus HOM05D003615 ORTHO05D004858 1.3e-34 152.9 315 35.6
Sabra06G0205200 Salix brachista HOM05D000330 ORTHO05D004858 1.3e-34 152.9 335 32.8
Medtr1g060280 Medicago truncatula HOM05D003615 ORTHO05D004858 2.3e-34 152.1 334 34.7
Potri.006G262900 Populus trichocarpa HOM05D003615 ORTHO05D004858 3.9e-34 151.4 321 34.9
COL.COLO4_04783 Corchorus olitorius HOM05D003615 ORTHO05D004858 5.1e-34 151.0 323 35.9
Eucgr.I01825 Eucalyptus grandis HOM05D003615 ORTHO05D004858 1.1e-33 149.8 327 34.6
PGR119G0743 Punica granatum HOM05D003615 ORTHO05D004858 2.0e-30 139.0 324 33.6
FAN09G2044 Fragaria x ananassa HOM05D003615 ORTHO05D004858 2.6e-30 138.7 324 34.6
Rhsim10G0023500 Rhododendron simsii HOM05D003615 ORTHO05D004858 2.6e-30 138.7 321 31.8
AT1G23850 Arabidopsis thaliana HOM05D003615 ORTHO05D004858 4.5e-30 137.9 349 32.7
Carub.0001s2334 Capsella rubella HOM05D003615 ORTHO05D004858 4.5e-30 137.9 344 31.7
Eucgr.B03350 Eucalyptus grandis HOM05D003615 ORTHO05D004858 4.5e-30 137.9 303 34.7
AL1G37600 Arabidopsis lyrata HOM05D003615 ORTHO05D004858 1.3e-29 136.3 350 31.4
CARHR024240 Cardamine hirsuta HOM05D003615 ORTHO05D004858 1.7e-29 136.0 348 31.0
FvH4_4g34761 Fragaria vesca HOM05D003615 ORTHO05D015110 2.2e-29 135.6 294 34.4
FAN12G3114 Fragaria x ananassa HOM05D003615 ORTHO05D015110 2.2e-29 135.6 294 34.4
Rhsim10G0023900 Rhododendron simsii HOM05D003615 ORTHO05D004858 2.9e-29 135.2 321 31.2
Eucgr.I01826 Eucalyptus grandis HOM05D003615 ORTHO05D004858 2.4e-28 132.1 316 33.5
FAN14G2568 Fragaria x ananassa HOM05D003615 ORTHO05D004858 3.2e-28 131.7 220 41.8
BcaB07g32357 Brassica carinata HOM05D003615 ORTHO05D004858 7.1e-28 130.6 327 33.6
Ciclev10001867m.g Citrus clementina HOM05D003615 ORTHO05D004858 7.1e-28 130.6 322 30.4
FvH4_3g33230 Fragaria vesca HOM05D003615 ORTHO05D004858 1.2e-27 129.8 228 39.5
Glyma.08G288200 Glycine max HOM05D003615 ORTHO05D004858 1.2e-27 129.8 281 34.5
CANSAT01G3275 Cannabis sativa HOM05D003615 ORTHO05D004858 2.1e-27 129.0 188 39.4
FAN07G1344 Fragaria x ananassa HOM05D003615 ORTHO05D015110 3.5e-27 128.3 290 32.8
MELO3C009943.2 Cucumis melo HOM05D003615 ORTHO05D004858 4.6e-27 127.9 327 30.3
Dinv35046 Davidia involucrata HOM05D003615 ORTHO05D004858 6.0e-27 127.5 267 34.8
AUR62005358 Chenopodium quinoa HOM05D003615 ORTHO05D004858 1.3e-26 126.3 327 30.0
CsaV3_3G042230 Cucumis sativus L. HOM05D003615 ORTHO05D004858 1.8e-26 125.9 327 30.0
BcaC05g26288 Brassica carinata HOM05D003615 ORTHO05D004858 3.0e-26 125.2 337 33.2
C05p23000 Brassica napus HOM05D003615 ORTHO05D004858 5.1e-26 124.4 338 33.1
BraA09t39593Z Brassica rapa HOM05D003615 ORTHO05D004858 6.7e-26 124.0 333 31.5
FAN17G2861 Fragaria x ananassa HOM05D003615 ORTHO05D015110 6.7e-26 124.0 290 32.8
Glyma.05G176900 Glycine max HOM05D003615 ORTHO05D004858 6.7e-26 124.0 224 36.6
FvH4_4g34760 Fragaria vesca HOM05D003615 ORTHO05D015110 3.3e-25 121.7 290 32.4
FAN12G4087 Fragaria x ananassa HOM05D003615 ORTHO05D015110 3.3e-25 121.7 290 32.4
Atru.chr6.2153 Acer truncatum HOM05D003615 ORTHO05D004858 4.3e-25 121.3 318 31.1
C05p23050 Brassica napus HOM05D003615 ORTHO05D004858 7.4e-25 120.6 330 29.4
BolC5t30999H Brassica oleracea HOM05D003615 ORTHO05D004858 9.6e-25 120.2 354 30.5
FvH4_6g20520 Fragaria vesca HOM05D003615 ORTHO05D004858 9.6e-25 120.2 165 46.1
Medtr8g090020 Medicago truncatula HOM05D003615 ORTHO05D004858 9.6e-25 120.2 257 37.0
TAR622G1321 Trochodendron aralioides HOM05D003615 ORTHO05D004858 4.8e-24 117.9 309 32.7
FAN14G3971 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.8e-23 115.9 198 40.9
CARHR024250 Cardamine hirsuta HOM05D003615 ORTHO05D004858 3.1e-23 115.2 330 28.8
ClCG10G014370 Citrullus lanatus HOM05D003615 ORTHO05D004858 4.0e-23 114.8 329 29.8
MELO3C009942.2 Cucumis melo HOM05D003615 ORTHO05D004858 1.2e-22 113.2 340 26.5
FAN05G3998 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.5e-22 112.8 168 42.9
TAR622G0247 Trochodendron aralioides HOM05D003615 ORTHO05D004858 3.4e-22 111.7 308 31.8
Prupe.1G255800 Prunus persica HOM05D003615 ORTHO05D015110 4.5e-22 111.3 281 33.8
THA.LOC104822136 Tarenaya hassleriana HOM05D003615 ORTHO05D004858 7.6e-22 110.5 345 29.9
BolC7t42544H Brassica oleracea HOM05D003615 ORTHO05D004858 1.0e-21 110.2 368 29.3
CsaV3_3G042210 Cucumis sativus L. HOM05D003615 ORTHO05D004858 1.0e-21 110.2 344 26.2
C07p20230 Brassica napus HOM05D003615 ORTHO05D004858 1.3e-21 109.8 361 29.6
ClCG10G014380 Citrullus lanatus HOM05D003615 ORTHO05D004858 1.7e-21 109.4 341 26.4
COL.COLO4_36978 Corchorus olitorius HOM05D003615 ORTHO05D004858 1.7e-21 109.4 116 53.4
AT1G23840 Arabidopsis thaliana HOM05D003615 ORTHO05D004858 2.2e-21 109.0 337 29.7
AL1G37580 Arabidopsis lyrata HOM05D003615 ORTHO05D004858 2.9e-21 108.6 338 29.6
AT1G23830 Arabidopsis thaliana HOM05D003615 ORTHO05D004858 2.9e-21 108.6 343 30.6
BcaC06g35055 Brassica carinata HOM05D003615 ORTHO05D004858 2.9e-21 108.6 368 29.6
Sed0019217 Sechium edule HOM05D003615 ORTHO05D004858 3.8e-21 108.2 339 25.1
FAN07G0013 Fragaria x ananassa HOM05D003615 ORTHO05D015110 4.9e-21 107.8 280 33.2
Thecc.02G244700 Theobroma cacao HOM05D003615 ORTHO05D004858 8.4e-21 107.1 307 29.3
A07p13760 Brassica napus HOM05D003615 ORTHO05D004858 1.9e-20 105.9 367 29.4
Lalb_Chr07g0185251 Lupinus albus HOM05D003615 ORTHO05D004858 7.1e-20 104.0 123 45.5
Thhalv10008195m.g Eutrema salsugineum HOM05D003615 ORTHO05D004858 9.3e-20 103.6 327 30.6
Sp1g21200 Schrenkiella parvula HOM05D003615 ORTHO05D004858 1.6e-19 102.8 370 28.1
BraA07t29125Z Brassica rapa HOM05D003615 ORTHO05D004858 6.0e-19 100.9 368 28.0
Ah.03g132550 Amaranthus hybridus HOM05D003615 ORTHO05D004858 7.9e-19 100.5 297 29.3
BcaB03g14133 Brassica carinata HOM05D003615 ORTHO05D004858 1.8e-18 99.4 357 27.7
CARHR024230 Cardamine hirsuta HOM05D003615 ORTHO05D004858 5.1e-18 97.8 347 26.8
AUR62014010 Chenopodium quinoa HOM05D003615 ORTHO05D004858 6.7e-18 97.4 324 26.5
FAN17G2106 Fragaria x ananassa HOM05D003615 ORTHO05D015110 6.7e-18 97.4 208 35.1
EL10Ac6g13654 Beta vulgaris HOM05D003615 ORTHO05D004858 1.1e-17 96.7 320 27.8
Atru.chr6.2186 Acer truncatum HOM05D003615 ORTHO05D004858 1.3e-16 93.2 183 35.0
A09p40990 Brassica napus HOM05D003615 ORTHO05D004858 1.3e-16 93.2 192 32.3
Eucgr.B03353 Eucalyptus grandis HOM05D003615 ORTHO05D015110 2.2e-16 92.4 296 30.4
Carub.0001s2333 Capsella rubella HOM05D003615 ORTHO05D004858 6.3e-16 90.9 309 27.8
AUR62014008 Chenopodium quinoa HOM05D002682 ORTHO05D002878 1.4e-15 89.7 176 35.2
FvH4_4g34720 Fragaria vesca HOM05D003615 ORTHO05D022686 2.4e-15 89.0 151 38.4
BcaB07g32359 Brassica carinata HOM05D003615 ORTHO05D004858 5.3e-15 87.8 290 27.9
FAN12G0197 Fragaria x ananassa HOM05D003615 ORTHO05D022686 9.0e-15 87.0 151 38.4
FAN22G2348 Fragaria x ananassa HOM05D003615 ORTHO05D015110 2.6e-14 85.5 282 30.9
MD16G1090500 Malus domestica HOM05D003615 ORTHO05D004858 3.4e-14 85.1 87 48.3
Ah.03g132560 Amaranthus hybridus HOM05D003615 ORTHO05D004858 7.6e-14 84.0 312 25.6
AUR62005356 Chenopodium quinoa HOM05D003615 ORTHO05D004858 7.6e-14 84.0 132 37.1
FAN11G1076 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.3e-13 83.2 235 31.5
AUR62014009 Chenopodium quinoa HOM05D003615 ORTHO05D004858 3.8e-13 81.6 122 37.7
Thhalv10009999m.g Eutrema salsugineum HOM05D003615 ORTHO05D004858 3.8e-13 81.6 357 27.5
Dinv24874 Davidia involucrata HOM05D003615 ORTHO05D004858 1.1e-12 80.1 98 48.0
Sed0025994 Sechium edule HOM05D000122 ORTHO05D000139 1.2e-11 76.6 299 24.7
Hund05979 Selenicereus undatus HOM05D003615 ORTHO05D004858 1.2e-11 76.6 236 31.8
Thecc.02G244800 Theobroma cacao HOM05D003615 ORTHO05D004858 3.0e-10 72.0 131 35.9
Nn3g16919 Nelumbo nucifera HOM05D003615 ORTHO05D004858 8.8e-10 70.5 134 34.3
Duzib251G0647 Durio zibethinus HOM05D003615 ORTHO05D004858 1.1e-09 70.1 143 36.4
Duzib187G1117 Durio zibethinus HOM05D003615 ORTHO05D004858 2.8e-08 65.5 123 35.8
AL1G37590 Arabidopsis lyrata HOM05D003615 ORTHO05D004858 3.7e-08 65.1 310 24.5
FAN11G0954 Fragaria x ananassa HOM05D003615 ORTHO05D004858 6.3e-08 64.3 62 50.0
ATR0580G065 Amborella trichopoda HOM05D004960 ORTHO05D004696 8.2e-08 63.9 285 25.6
C07p20220 Brassica napus HOM05D003615 ORTHO05D004858 1.4e-07 63.2 195 28.2
Eucgr.L03458 Eucalyptus grandis HOM05D003615 ORTHO05D004858 1.8e-07 62.8 106 35.8
Sc18g0001840 Simmondsia chinensis HOM05D003615 ORTHO05D004858 3.1e-07 62.0 234 26.9
Potri.010G250300 Populus trichocarpa HOM05D004960 ORTHO05D004696 4.1e-07 61.6 109 31.2
PGR142G2932 Punica granatum HOM05D003615 ORTHO05D004858 4.1e-07 61.6 74 43.2
BcaC06g35057 Brassica carinata HOM05D003615 ORTHO05D004858 9.1e-07 60.5 186 28.5
TAR626G0702 Trochodendron aralioides HOM05D004960 ORTHO05D004696 9.1e-07 60.5 297 24.9
BraA09t39587Z Brassica rapa HOM05D003615 ORTHO05D004858 1.2e-06 60.1 184 28.3
TAR626G1729 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.5e-06 59.7 298 24.2
BolC5t31001H Brassica oleracea HOM05D003615 ORTHO05D016696 3.4e-06 58.5 83 37.3
CSS0034998 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 3.4e-06 58.5 221 25.8


User provided reference genes

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