Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G0400 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 2624.0 1389 100.0
FAN12G3001 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 2590.1 1389 98.7
FAN07G2176 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 2505.3 1417 94.7
RcHm_v2.0_Chr4g0423071 Rosa chinensis HOM05D007614 ORTHO05D009538 0.0e+00 2400.2 1410 90.3
FvH4_4g18510 Fragaria vesca HOM05D007614 ORTHO05D009538 0.0e+00 2246.1 1223 97.4
FAN17G0278 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 2168.3 1224 94.4
MD13G1166500 Malus domestica HOM05D007614 ORTHO05D009538 0.0e+00 1966.8 1409 74.9
QL06p010082 Quercus lobata HOM05D007614 ORTHO05D009538 0.0e+00 1661.7 1421 65.2
Haze_01174 Corylus avellana HOM05D007614 ORTHO05D009538 0.0e+00 1624.0 1406 64.0
Dinv29737 Davidia involucrata HOM05D007614 ORTHO05D009538 0.0e+00 1575.5 1416 61.2
Atru.chr6.1993 Acer truncatum HOM05D007614 ORTHO05D009538 0.0e+00 1554.3 1421 61.4
TAR365G0799 Trochodendron aralioides HOM05D007614 ORTHO05D009538 0.0e+00 1553.5 1427 61.3
CANSAT78G1530 Cannabis sativa HOM05D007614 ORTHO05D009538 0.0e+00 1523.1 1416 60.2
Ciclev10004153m.g Citrus clementina HOM05D007614 ORTHO05D009538 0.0e+00 1516.5 1411 60.0
Prupe.1G132900 Prunus persica HOM05D007614 ORTHO05D009538 0.0e+00 1493.0 1095 73.8
Cfa015415 Carpinus fangiana HOM05D007614 ORTHO05D009538 0.0e+00 1489.9 1247 64.8
CSS0029892 Camellia sinensis var. sinensis HOM05D007614 ORTHO05D009538 0.0e+00 1489.2 1420 59.2
Duzib151G0258 Durio zibethinus HOM05D007614 ORTHO05D009538 0.0e+00 1488.0 1421 58.8
CSS0000522 Camellia sinensis var. sinensis HOM05D007614 ORTHO05D009538 0.0e+00 1465.7 1419 58.4
CiPaw.02G080700 Carya illinoinensis HOM05D007614 ORTHO05D009538 0.0e+00 1464.5 1245 63.7
Potri.010G011800 Populus trichocarpa HOM05D007614 ORTHO05D009538 0.0e+00 1461.4 1422 58.6
TWI73G0642 Tripterygium wilfordii HOM05D007614 ORTHO05D009538 0.0e+00 1454.5 1410 58.4
GSVIVG01035126001 Vitis vinifera HOM05D007614 ORTHO05D009538 0.0e+00 1443.7 1276 61.1
Gorai.006G076700 Gossypium raimondii HOM05D007614 ORTHO05D009538 0.0e+00 1424.1 1427 56.6
Sabra10G0007500 Salix brachista HOM05D007614 ORTHO05D009538 0.0e+00 1423.3 1416 57.7
COL.COLO4_37910 Corchorus olitorius HOM05D007614 ORTHO05D009538 0.0e+00 1422.5 1421 57.3
Nn3g21526 Nelumbo nucifera HOM05D007614 ORTHO05D009538 0.0e+00 1397.1 1419 55.9
MBI19_g34788_MAGBIO Magnolia biondii HOM05D007614 ORTHO05D009538 0.0e+00 1381.7 1430 55.0
PGR031G0733 Punica granatum HOM05D007614 ORTHO05D009538 0.0e+00 1379.0 1424 55.0
PSO407G0339 Papaver somniferum HOM05D007614 ORTHO05D009538 0.0e+00 1328.2 1445 53.2
Aqoxy2G02920 Aquilegia oxysepala HOM05D007614 ORTHO05D009538 0.0e+00 1308.9 1437 51.7
THA.LOC104827336 Tarenaya hassleriana HOM05D007614 ORTHO05D009538 0.0e+00 1306.6 1422 52.3
Cc03_g01650 Coffea canephora HOM05D007614 ORTHO05D009538 0.0e+00 1298.9 1438 52.7
Sc13g0003320 Simmondsia chinensis HOM05D007614 ORTHO05D009538 0.0e+00 1292.3 1425 52.5
Thhalv10003518m.g Eutrema salsugineum HOM05D007614 ORTHO05D009538 0.0e+00 1286.9 1376 52.2
CARHR182630 Cardamine hirsuta HOM05D007614 ORTHO05D009538 0.0e+00 1282.3 1372 53.1
Lj3C822G9 Lonicera japonica HOM05D007614 ORTHO05D009538 0.0e+00 1278.1 1240 58.9
Nitab4.5_0002628g0040 Nicotiana tabacum HOM05D007614 ORTHO05D009538 0.0e+00 1274.6 1427 51.7
Oeu006410.1 Olea europaea HOM05D007614 ORTHO05D009538 0.0e+00 1267.7 1426 51.5
AL8G22620 Arabidopsis lyrata HOM05D007614 ORTHO05D009538 0.0e+00 1267.3 1331 53.2
Peaxi162Scf00065g01533 Petunia axillaris HOM05D007614 ORTHO05D009538 0.0e+00 1261.9 1434 50.8
AT5G49110 Arabidopsis thaliana HOM05D007614 ORTHO05D009538 0.0e+00 1260.7 1325 53.0
BcaB07g34217 Brassica carinata HOM05D007614 ORTHO05D009538 0.0e+00 1250.0 1369 51.4
A02p37890 Brassica napus HOM05D007614 ORTHO05D009538 0.0e+00 1248.4 1427 49.9
BraA02t08773Z Brassica rapa HOM05D007614 ORTHO05D009538 0.0e+00 1241.1 1341 51.5
SalBow2G0719 Salvia bowleyana HOM05D007614 ORTHO05D009538 0.0e+00 1237.6 1357 51.5
BolC2t11775H Brassica oleracea HOM05D007614 ORTHO05D009538 0.0e+00 1232.2 1364 51.0
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 0.0e+00 1231.9 1351 51.2
Sopen01g028150 Solanum pennellii HOM05D007614 ORTHO05D009538 0.0e+00 1231.1 1385 51.5
Nitab4.5_0000513g0110 Nicotiana tabacum HOM05D007614 ORTHO05D009538 0.0e+00 1219.5 1338 51.9
Solyc01g066610.4 Solanum lycopersicum HOM05D007614 ORTHO05D009538 0.0e+00 1213.0 1385 51.1
SGA_v2.0_scaffold67G22611 Striga asiatica HOM05D007614 ORTHO05D009538 0.0e+00 1198.7 1441 48.7
Lsat_1_v5_gn_6_96381 Lactuca sativa HOM05D007614 ORTHO05D009538 0.0e+00 1186.4 1410 51.2
Manes.03G197500 Manihot esculenta HOM05D007614 ORTHO05D009538 0.0e+00 1144.8 1115 57.8
BcaC03g17700 Brassica carinata HOM05D007614 ORTHO05D009538 0.0e+00 1142.5 1353 48.6
Thecc.04G287600 Theobroma cacao HOM05D007614 ORTHO05D009538 0.0e+00 1099.0 1037 59.7
PGSC0003DMG400011332 Solanum tuberosum HOM05D007614 ORTHO05D009538 0.0e+00 1087.8 1234 51.0
DCAR_027058 Daucus carota HOM05D007614 ORTHO05D009538 0.0e+00 1087.0 1209 50.7
Cpa.g.sc16.197 Carica papaya HOM05D007614 ORTHO05D009538 0.0e+00 1077.8 1038 58.9
ECA240G3304 Erigeron canadensis HOM05D007614 ORTHO05D009538 0.0e+00 1075.5 1155 52.9
Eucgr.B01588 Eucalyptus grandis HOM05D007614 ORTHO05D009538 3.3e-307 1058.9 1124 53.6
ATR0796G125 Amborella trichopoda HOM05D007614 ORTHO05D009538 1.8e-297 1026.5 1443 44.4
Gohir.A09G063000 Gossypium hirsutum HOM05D007614 ORTHO05D009538 1.9e-294 1016.5 1038 55.5
Gohir.D09G062000 Gossypium hirsutum HOM05D007614 ORTHO05D009538 5.7e-291 1005.0 1040 54.9
Hma1.2p1_1807F.1_g303400 Hydrangea macrophylla HOM05D007614 ORTHO05D009538 1.4e-284 983.8 846 62.3
HPP92_013726 Vanilla planifolia HOM05D007614 ORTHO05D009538 6.8e-276 954.9 1435 42.7
Hma1.2p1_0804F.1_g220930 Hydrangea macrophylla HOM05D007614 ORTHO05D009538 1.9e-270 936.8 846 60.2
SEGI_15090 Sequoiadendron giganteum HOM05D007614 ORTHO05D009538 1.5e-254 884.0 1360 41.6
CDE01G0153 Ceratophyllum demersum HOM05D007614 ORTHO05D009538 3.1e-228 796.6 1420 37.8
Zm00001eb016350 Zea mays HOM05D007614 ORTHO05D009538 4.2e-225 786.2 1271 39.7
BcaC03g17696 Brassica carinata HOM05D007614 ORTHO05D009538 2.7e-216 756.9 990 47.1
Migut.G00138 Erythranthe guttata HOM05D007614 ORTHO05D009538 8.7e-207 725.3 695 57.4
Actinidia00005 Actinidia chinensis HOM05D007614 ORTHO05D009538 5.3e-204 716.1 695 58.0
CAN.G421.11 Capsicum annuum HOM05D007614 ORTHO05D009538 1.9e-185 654.4 885 45.9
HanXRQChr03g0089461 Helianthus annuus HOM05D007614 ORTHO05D009538 1.5e-182 644.8 623 57.0
AagrBONN_evm.TU.Sc2ySwM_344.1704 Anthoceros agrestis HOM05D007614 ORTHO05D009538 4.2e-177 626.7 1397 33.1
AagrBONN_evm.TU.Sc2ySwM_344.1702 Anthoceros agrestis HOM05D007614 ORTHO05D009538 8.0e-176 622.5 1343 33.5
Pp3c13_17960 Physcomitrium patens HOM05D007614 ORTHO05D009538 8.0e-176 622.5 1360 33.2
Mapoly0051s0073 Marchantia polymorpha HOM05D007614 ORTHO05D009538 4.0e-175 620.2 1349 33.6
Migut.G00137 Erythranthe guttata HOM05D007614 ORTHO05D009538 1.2e-115 422.5 586 45.2
MSTRG.3900 Avicennia marina HOM05D007614 ORTHO05D009538 2.9e-101 374.8 472 47.5
CBR_g12376 Chara braunii HOM05D007614 ORTHO05D009538 3.4e-94 351.3 1247 26.9
BcaC03g17697 Brassica carinata HOM05D007614 ORTHO05D009538 1.4e-87 329.3 357 50.4
BcaB01g01537 Brassica carinata HOM05D007614 ORTHO05D009538 2.0e-86 325.5 337 55.5
Cpa.g.c41899 Carica papaya HOM05D007614 ORTHO05D009538 1.7e-80 305.8 276 63.0
HanXRQChr03g0089481 Helianthus annuus HOM05D007614 ORTHO05D009538 3.2e-76 291.6 294 55.4
CAN.G421.12 Capsicum annuum HOM05D007614 ORTHO05D009538 3.7e-64 251.5 292 51.4
Cc01_g15100 Coffea canephora HOM05D007614 ORTHO05D009538 3.5e-46 191.8 268 48.1
Eucgr.B01587 Eucalyptus grandis HOM05D007614 ORTHO05D009538 5.2e-42 177.9 209 51.7
HanXRQChr03g0089471 Helianthus annuus HOM05D007614 ORTHO05D009538 1.9e-28 132.9 287 35.2
Actinidia27756 Actinidia chinensis HOM05D007614 ORTHO05D009538 9.5e-28 130.6 92 76.1
BcaB04g20478 Brassica carinata HOM05D007614 ORTHO05D009538 2.8e-27 129.0 129 52.7
Actinidia14288 Actinidia chinensis HOM05D007614 ORTHO05D009538 1.2e-22 113.6 120 57.5
Os03g0341200 Oryza sativa ssp. japonica HOM05D007614 ORTHO05D009538 1.5e-20 106.7 183 42.6
Zm00001eb167500 Zea mays HOM05D000563 ORTHO05D009538 9.2e-15 87.4 118 44.9
Actinidia14287 Actinidia chinensis HOM05D065619 ORTHO05D037991 3.1e-10 72.4 87 46.0
Os05g0314700 Oryza sativa ssp. japonica HOM05D007614 ORTHO05D009538 2.9e-08 65.9 118 39.8


User provided reference genes

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