Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G0392 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.0e-224 783.1 395 100.0
FAN22G0799 Fragaria x ananassa HOM05D003867 ORTHO05D004593 5.2e-205 717.6 363 99.4
FAN17G1814 Fragaria x ananassa HOM05D003867 ORTHO05D004593 9.2e-202 706.8 375 96.3
FAN07G1251 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.2e-201 706.4 363 98.1
FvH4_4g24110 Fragaria vesca HOM05D003867 ORTHO05D004593 1.2e-190 669.8 487 74.7
RcHm_v2.0_Chr4g0430891 Rosa chinensis HOM05D003867 ORTHO05D004593 4.6e-185 651.4 487 72.5
MD13G1115400 Malus domestica HOM05D003867 ORTHO05D004593 2.1e-182 642.5 487 70.4
Prupe.1G231900 Prunus persica HOM05D003867 ORTHO05D004593 1.8e-181 639.4 487 70.8
MD16G1115300 Malus domestica HOM05D003867 ORTHO05D004593 8.9e-181 637.1 487 70.6
CSS0021164 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 1.2e-177 626.7 487 68.4
COL.COLO4_12823 Corchorus olitorius HOM05D003867 ORTHO05D004593 1.2e-177 626.7 488 67.8
Gohir.A12G147700 Gossypium hirsutum HOM05D003867 ORTHO05D004593 6.0e-177 624.4 487 67.1
Gohir.D12G152000 Gossypium hirsutum HOM05D003867 ORTHO05D004593 1.3e-176 623.2 487 68.2
Gorai.001G109800 Gossypium raimondii HOM05D003867 ORTHO05D004593 1.3e-176 623.2 487 68.2
arahy.Tifrunner.gnm1.ann1.VZW0IR Arachis hypogaea HOM05D003867 ORTHO05D004593 1.7e-176 622.9 485 68.5
Gorai.008G164400 Gossypium raimondii HOM05D003867 ORTHO05D004593 2.3e-176 622.5 486 68.3
Medtr1g042300 Medicago truncatula HOM05D003867 ORTHO05D004593 3.9e-176 621.7 484 68.8
CSS0008021 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 5.1e-176 621.3 487 67.6
Lsat_1_v5_gn_4_184020 Lactuca sativa HOM05D003867 ORTHO05D004593 5.1e-176 621.3 486 69.5
Gohir.D07G101900 Gossypium hirsutum HOM05D003867 ORTHO05D004593 6.6e-176 620.9 487 68.0
HanXRQChr09g0255191 Helianthus annuus HOM05D003867 ORTHO05D004593 6.6e-176 620.9 480 68.8
Duzib268G1394 Durio zibethinus HOM05D003867 ORTHO05D004593 8.6e-176 620.5 487 68.0
Thecc.02G275800 Theobroma cacao HOM05D003867 ORTHO05D004593 1.9e-175 619.4 487 68.0
Peaxi162Scf00128g01017 Petunia axillaris HOM05D003867 ORTHO05D004593 3.3e-175 618.6 488 67.8
Psat6g040120 Pisum sativum HOM05D003867 ORTHO05D004593 3.3e-175 618.6 484 68.4
Migut.E00031 Erythranthe guttata HOM05D003867 ORTHO05D004593 5.6e-175 617.8 486 68.3
Lalb_Chr03g0037281 Lupinus albus HOM05D003867 ORTHO05D004593 7.3e-175 617.5 484 68.2
Duzib251G0884 Durio zibethinus HOM05D003867 ORTHO05D004593 9.5e-175 617.1 487 67.4
CANSAT64G1093 Cannabis sativa HOM05D003867 ORTHO05D004593 2.8e-174 615.5 484 67.8
Haze_12379 Corylus avellana HOM05D003867 ORTHO05D004593 2.8e-174 615.5 486 67.9
Gohir.A07G097600 Gossypium hirsutum HOM05D003867 ORTHO05D004593 3.6e-174 615.1 487 66.7
Lj6g0022289 Lotus japonicus HOM05D003867 ORTHO05D004593 3.6e-174 615.1 484 68.4
TWI36G0688 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 3.6e-174 615.1 487 66.9
DCAR_007011 Daucus carota HOM05D003867 ORTHO05D004593 4.7e-174 614.8 486 67.9
PGSC0003DMG400001292 Solanum tuberosum HOM05D003867 ORTHO05D004593 4.7e-174 614.8 486 67.7
Lalb_Chr01g0021001 Lupinus albus HOM05D003867 ORTHO05D004593 6.2e-174 614.4 484 68.2
Solyc02g087240.4 Solanum lycopersicum HOM05D003867 ORTHO05D004593 6.2e-174 614.4 486 67.7
Sopen02g031980 Solanum pennellii HOM05D003867 ORTHO05D004593 6.2e-174 614.4 486 67.7
CiPaw.05G113400 Carya illinoinensis HOM05D003867 ORTHO05D004593 8.1e-174 614.0 487 67.4
Duzib248G0225 Durio zibethinus HOM05D003867 ORTHO05D004593 1.1e-173 613.6 487 67.4
ECA232G3717 Erigeron canadensis HOM05D003867 ORTHO05D004593 1.1e-173 613.6 484 67.4
Sed0026140 Sechium edule HOM05D003867 ORTHO05D004593 1.1e-173 613.6 487 67.4
C03p04400 Brassica napus HOM05D003867 ORTHO05D004593 1.4e-173 613.2 487 69.0
Nitab4.5_0000271g0190 Nicotiana tabacum HOM05D003867 ORTHO05D004593 1.4e-173 613.2 487 67.4
QL03p054504 Quercus lobata HOM05D003867 ORTHO05D004593 1.4e-173 613.2 486 68.3
TPR.G25178 Trifolium pratense HOM05D003867 ORTHO05D004593 1.8e-173 612.8 484 67.8
TAR374G1237 Trochodendron aralioides HOM05D003867 ORTHO05D004593 1.8e-173 612.8 486 68.1
Ca_12000_v3 Cicer arietinum L. HOM05D003867 ORTHO05D004593 2.4e-173 612.5 484 67.8
CARHR204460 Cardamine hirsuta HOM05D003867 ORTHO05D004593 3.1e-173 612.1 487 68.8
Carub.0006s0748 Capsella rubella HOM05D003867 ORTHO05D004593 4.0e-173 611.7 487 69.0
Manes.12G014300 Manihot esculenta HOM05D003867 ORTHO05D004593 4.0e-173 611.7 487 66.7
Aa31LG3G18010 Aethionema arabicum HOM05D003867 ORTHO05D004593 6.8e-173 610.9 487 68.4
Glyma.10G005500 Glycine max HOM05D003867 ORTHO05D004593 6.8e-173 610.9 484 67.6
Sp6g34370 Schrenkiella parvula HOM05D003867 ORTHO05D004593 1.5e-172 609.8 509 66.4
Hund25446 Selenicereus undatus HOM05D003867 ORTHO05D004593 1.5e-172 609.8 483 67.1
DCAR_031187 Daucus carota HOM05D003867 ORTHO05D004593 2.6e-172 609.0 485 67.6
AT5G08530 Arabidopsis thaliana HOM05D003867 ORTHO05D004593 3.4e-172 608.6 487 68.6
EL10Ac6g13463 Beta vulgaris HOM05D003867 ORTHO05D004593 3.4e-172 608.6 484 67.6
TWI75G1178 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 3.4e-172 608.6 487 65.1
A10p28200 Brassica napus HOM05D003867 ORTHO05D004593 4.4e-172 608.2 487 68.4
Sabra10G0047900 Salix brachista HOM05D003867 ORTHO05D004593 5.8e-172 607.8 486 66.5
BcaB01g05588 Brassica carinata HOM05D003867 ORTHO05D004593 7.6e-172 607.4 487 68.6
Thhalv10013394m.g Eutrema salsugineum HOM05D003867 ORTHO05D004593 9.9e-172 607.1 487 68.2
AL6G19230 Arabidopsis lyrata HOM05D003867 ORTHO05D004593 1.3e-171 606.7 487 68.6
Glyma.02G003300 Glycine max HOM05D003867 ORTHO05D004593 1.3e-171 606.7 484 67.4
Rhsim12G0153900 Rhododendron simsii HOM05D003867 ORTHO05D004593 1.3e-171 606.7 487 66.7
BraA10t44869Z Brassica rapa HOM05D003867 ORTHO05D004593 1.7e-171 606.3 486 68.3
Nn3g16522 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.7e-171 606.3 486 67.3
Nn4g22382 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.7e-171 606.3 486 67.5
PGR119G1061 Punica granatum HOM05D003867 ORTHO05D004593 1.7e-171 606.3 492 66.5
Potri.010G057400 Populus trichocarpa HOM05D003867 ORTHO05D004593 2.2e-171 605.9 487 66.3
MELO3C009702.2 Cucumis melo HOM05D003867 ORTHO05D004593 4.9e-171 604.7 487 66.1
CsaV3_3G039600 Cucumis sativus L. HOM05D003867 ORTHO05D004593 4.9e-171 604.7 487 66.3
BolC9t59588H Brassica oleracea HOM05D003867 ORTHO05D004593 6.4e-171 604.4 486 68.1
Aqoxy3G01483 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 1.1e-170 603.6 487 67.6
BolC3t12971H Brassica oleracea HOM05D003867 ORTHO05D004593 1.1e-170 603.6 484 68.4
HanXRQChr15g0486841 Helianthus annuus HOM05D003867 ORTHO05D004593 1.1e-170 603.6 480 67.3
Cpa.g.sc257.6 Carica papaya HOM05D003867 ORTHO05D004593 1.4e-170 603.2 487 65.9
CDE09G0709 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 1.4e-170 603.2 486 66.9
Phvul.007G274700 Phaseolus vulgaris HOM05D003867 ORTHO05D004593 1.4e-170 603.2 477 68.6
Hund06074 Selenicereus undatus HOM05D003867 ORTHO05D004593 1.4e-170 603.2 485 66.4
A03p03890 Brassica napus HOM05D003867 ORTHO05D004593 1.9e-170 602.8 488 67.4
Peaxi162Scf00449g00825 Petunia axillaris HOM05D003867 ORTHO05D004593 3.2e-170 602.1 483 66.9
vmacro15114 Vaccinium macrocarpon HOM05D003867 ORTHO05D004593 3.2e-170 602.1 487 65.5
BcaB08g37249 Brassica carinata HOM05D003867 ORTHO05D004593 5.4e-170 601.3 487 68.2
MSTRG.7988 Avicennia marina HOM05D003867 ORTHO05D004593 7.1e-170 600.9 486 67.5
CAN.G206.61 Capsicum annuum HOM05D003867 ORTHO05D004593 7.1e-170 600.9 485 66.8
Oeu020305.1 Olea europaea HOM05D003867 ORTHO05D004593 7.1e-170 600.9 486 66.9
VMungo0720G1468 Vigna mungo HOM05D003867 ORTHO05D004593 9.2e-170 600.5 493 67.5
C09p68410 Brassica napus HOM05D003867 ORTHO05D004593 1.2e-169 600.1 489 67.9
BraA03t09737Z Brassica rapa HOM05D003867 ORTHO05D004593 1.6e-169 599.7 485 68.5
THA.LOC104819362 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 6.0e-169 597.8 487 66.9
ClCG02G006860 Citrullus lanatus HOM05D003867 ORTHO05D004593 1.0e-168 597.0 487 65.3
Zm00001eb329270 Zea mays HOM05D003867 ORTHO05D004593 3.9e-168 595.1 487 68.4
Oeu019042.1 Olea europaea HOM05D003867 ORTHO05D004593 5.1e-168 594.7 486 66.5
MBI11_g06772_MAGBIO Magnolia biondii HOM05D003867 ORTHO05D004593 4.3e-167 591.7 484 65.5
PSO063G4816 Papaver somniferum HOM05D003867 ORTHO05D004593 4.3e-167 591.7 487 66.1
Eucgr.H04659 Eucalyptus grandis HOM05D003867 ORTHO05D004593 9.6e-167 590.5 487 65.9
SGA_v2.0_scaffold347G49568 Striga asiatica HOM05D003867 ORTHO05D004593 1.2e-166 590.1 487 66.1
SGA_v2.0_scaffold63G21760 Striga asiatica HOM05D003867 ORTHO05D004593 1.2e-166 590.1 487 66.1
PSO782G1516 Papaver somniferum HOM05D003867 ORTHO05D004593 1.6e-166 589.7 487 66.1
THA.LOC104818400 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 2.8e-166 589.0 488 66.8
Zm00001eb110430 Zea mays HOM05D003867 ORTHO05D004593 3.6e-166 588.6 490 67.1
ATR0564G372 Amborella trichopoda HOM05D003867 ORTHO05D004593 1.1e-165 587.0 483 65.0
SEGI_02035 Sequoiadendron giganteum HOM05D003867 ORTHO05D004593 1.4e-165 586.6 484 66.1
Sc04g0010000 Simmondsia chinensis HOM05D003867 ORTHO05D004593 1.4e-165 586.6 479 66.8
Ah.03g133960 Amaranthus hybridus HOM05D003867 ORTHO05D004593 5.2e-165 584.7 482 65.1
ATR0665G595 Amborella trichopoda HOM05D003867 ORTHO05D004593 9.0e-165 583.9 483 64.8
Rhsim12G0103900 Rhododendron simsii HOM05D003867 ORTHO05D004593 1.2e-164 583.6 473 66.0
Os07g0645400 Oryza sativa ssp. japonica HOM05D003867 ORTHO05D004593 9.9e-164 580.5 457 69.4
Ciclev10033600m.g Citrus clementina HOM05D003867 ORTHO05D004593 3.2e-162 575.5 453 67.5
Cc11_g16710 Coffea canephora HOM05D003867 ORTHO05D004593 8.7e-160 567.4 460 66.7
SMO141G0212 Selaginella moellendorffii HOM05D003867 ORTHO05D004593 3.8e-155 552.0 461 64.4
Pp3c12_4050 Physcomitrium patens HOM05D003867 ORTHO05D004593 1.9e-154 549.7 484 63.0
HanXRQChr15g0475281 Helianthus annuus HOM05D003867 ORTHO05D004593 5.4e-154 548.1 480 60.0
Pp3c4_17990 Physcomitrium patens HOM05D003867 ORTHO05D004593 9.3e-154 547.4 430 66.0
AagrBONN_evm.TU.Sc2ySwM_117.2067 Anthoceros agrestis HOM05D003867 ORTHO05D004593 1.0e-152 543.9 430 64.7
Mapoly0052s0094 Marchantia polymorpha HOM05D003867 ORTHO05D004593 3.9e-152 542.0 439 64.5
CDE02G4050 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 1.5e-151 540.0 441 66.0
Actinidia08082 Actinidia chinensis HOM05D003867 ORTHO05D004593 2.5e-151 539.3 298 88.3
CBR_g4558 Chara braunii HOM05D003867 ORTHO05D004593 7.4e-151 537.7 434 64.1
Lsat_1_v5_gn_0_47760 Lactuca sativa HOM05D003867 ORTHO05D004593 1.1e-149 533.9 431 62.9
SGA_v2.0_scaffold1484G53963 Striga asiatica HOM05D003867 ORTHO05D004593 5.8e-148 528.1 299 89.0
Dinv39063 Davidia involucrata HOM05D003867 ORTHO05D004593 1.7e-147 526.6 310 82.6
unitig_744.g24299 Utricularia gibba HOM05D003867 ORTHO05D004593 1.7e-147 526.6 344 79.1
arahy.Tifrunner.gnm1.ann1.IM3BGM Arachis hypogaea HOM05D003867 ORTHO05D004593 3.2e-146 522.3 407 66.8
CiPaw.06G100100 Carya illinoinensis HOM05D003867 ORTHO05D004593 7.9e-145 517.7 408 66.2
MCO16G634 Micromonas commoda HOM05D003867 ORTHO05D004593 6.2e-142 508.1 433 61.0
AUR62024144 Chenopodium quinoa HOM05D003867 ORTHO05D004593 1.8e-141 506.5 406 64.8
AUR62005586 Chenopodium quinoa HOM05D003867 ORTHO05D004593 5.3e-141 505.0 405 64.7
unitig_21.g20878 Utricularia gibba HOM05D003867 ORTHO05D004593 1.5e-140 503.4 407 64.4
CBR_g30767 Chara braunii HOM05D003867 ORTHO05D004593 1.0e-136 490.7 421 59.4
Sed0024813 Sechium edule HOM05D003867 ORTHO05D004593 3.0e-136 489.2 451 61.6
Cre10.g422600 Chlamydomonas reinhardtii HOM05D003867 ORTHO05D004593 6.7e-136 488.0 436 58.0
PRCOL_00003927 Prasinoderma coloniale HOM05D003867 ORTHO05D004593 6.3e-134 481.5 427 58.8
Dinv37748 Davidia involucrata HOM05D003867 ORTHO05D004593 7.9e-129 464.5 384 64.3
TAR629G2520 Trochodendron aralioides HOM05D003867 ORTHO05D004593 3.8e-115 419.1 203 97.0
Haze_26697 Corylus avellana HOM05D003867 ORTHO05D004593 1.6e-108 397.1 395 51.6
Actinidia20690 Actinidia chinensis HOM05D003867 ORTHO05D004593 4.7e-105 385.6 221 84.2
Nn7g37842 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.7e-102 377.1 196 91.8
Nitab4.5_0000581g0020 Nicotiana tabacum HOM05D003867 ORTHO05D004593 2.9e-91 339.7 364 53.8
Nn3g20865 Nelumbo nucifera HOM05D003867 ORTHO05D004593 2.3e-88 330.1 174 89.1
HPP92_000985 Vanilla planifolia HOM05D003867 ORTHO05D004593 1.6e-84 317.4 315 56.2
Lj6P823T18 Lonicera japonica HOM05D003867 ORTHO05D004593 9.2e-69 265.0 142 89.4
HPP92_000984 Vanilla planifolia HOM05D003867 ORTHO05D004593 1.0e-67 261.5 164 83.5
GSVIVG01020401001 Vitis vinifera HOM05D003867 ORTHO05D004593 2.9e-62 243.4 147 86.4
Aqoxy3G01811 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 3.2e-53 213.4 106 93.4
MD16G1114800 Malus domestica HOM05D003867 ORTHO05D004593 3.2e-53 213.4 100 99.0
Actinidia09669 Actinidia chinensis HOM05D003867 ORTHO05D004593 1.5e-50 204.5 143 74.1
Nn8g40622 Nelumbo nucifera HOM05D003867 ORTHO05D004593 2.1e-49 200.7 102 92.2
Haze_26928 Corylus avellana HOM05D003867 ORTHO05D004593 5.3e-48 196.1 275 42.2
Aqoxy84s003 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 3.8e-46 189.9 219 45.7
Potri.008G177801 Populus trichocarpa HOM05D003867 ORTHO05D004593 5.4e-37 159.5 108 71.3
C02p03650 Brassica napus HOM05D003867 ORTHO05D004593 5.8e-31 139.4 285 35.4
BolC2t06324H Brassica oleracea HOM05D003867 ORTHO05D004593 2.9e-30 137.1 285 35.1
FAN03G1235 Fragaria x ananassa HOM05D003867 ORTHO05D004593 2.7e-28 130.6 66 97.0
FAN07G1961 Fragaria x ananassa HOM05D003867 ORTHO05D004593 7.9e-28 129.0 66 95.5
FAN08G0425 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.8e-27 127.9 66 93.9
BcaC03g13232 Brassica carinata HOM05D003867 ORTHO05D004593 3.9e-27 126.7 66 93.9
TAR629G2231 Trochodendron aralioides HOM05D003867 ORTHO05D004593 5.1e-27 126.3 65 93.8
CSS0023173 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 8.7e-27 125.6 66 92.4
FAN15G0422 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.1e-26 125.2 64 93.8
Actinidia09668 Actinidia chinensis HOM05D003867 ORTHO05D004593 7.4e-26 122.5 109 59.6
unitig_744.g24298 Utricularia gibba HOM05D003867 ORTHO05D004593 2.1e-25 120.9 65 89.2
BcaC03g13233 Brassica carinata HOM05D003155 ORTHO05D012487 1.8e-24 117.9 293 32.4
MD16G1114900 Malus domestica HOM05D003867 ORTHO05D004593 2.4e-24 117.5 61 86.9
Pp3c3_8640 Physcomitrium patens HOM05D003867 ORTHO05D004593 8.4e-22 109.0 68 76.5
GSVIVG01013345001 Vitis vinifera HOM05D003867 ORTHO05D004593 1.1e-21 108.6 67 70.1
Atru.chr11.2285 Acer truncatum HOM05D003867 ORTHO05D004593 1.6e-20 104.8 67 71.6
Pp3c13_10840 Physcomitrium patens HOM05D003867 ORTHO05D004593 9.7e-18 95.5 48 91.7
Hund25436 Selenicereus undatus HOM05D000424 ORTHO05D008586 1.8e-16 91.3 168 36.3
Duzib128G1406 Durio zibethinus HOM05D003867 ORTHO05D004593 2.7e-12 77.4 79 51.9
Atru.chr11.2286 Acer truncatum HOM05D003867 ORTHO05D004593 2.2e-09 67.8 39 82.1
Nitab4.5_0027010g0010 Nicotiana tabacum HOM05D003867 ORTHO05D004593 1.8e-08 64.7 61 72.1
Nitab4.5_0002184g0100 Nicotiana tabacum HOM05D003867 ORTHO05D004593 6.9e-08 62.8 61 59.0


User provided reference genes

Program Settings