Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.8e-299 1031.2 527 100.0
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 5.3e-298 1026.9 527 99.6
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.4e-237 825.5 532 83.1
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 4.3e-231 804.7 529 82.4
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 6.4e-227 790.8 529 80.9
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 6.7e-200 701.0 532 71.6
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.8e-195 685.3 524 71.2
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.9e-192 675.2 554 67.9
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 9.7e-191 670.6 517 70.4
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 5.9e-188 661.4 531 68.4
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.6e-185 653.3 509 70.1
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 4.7e-169 598.6 443 72.7
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 6.3e-166 588.2 533 60.6
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 1.1e-149 534.3 535 55.5
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 2.4e-149 533.1 534 55.8
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 7.0e-149 531.6 532 55.6
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 2.3e-147 526.6 532 56.0
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 1.5e-146 523.9 532 55.8
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 5.6e-146 521.9 530 54.2
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 1.2e-145 520.8 539 55.7
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 1.6e-145 520.4 532 55.8
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 6.8e-144 515.0 541 54.9
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 2.6e-143 513.1 538 54.1
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 7.5e-143 511.5 540 54.6
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 2.9e-142 509.6 532 54.1
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 4.9e-142 508.8 509 55.6
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 3.5e-140 502.7 534 53.4
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 1.7e-139 500.4 532 52.8
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 3.0e-139 499.6 533 54.2
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 2.5e-138 496.5 511 54.2
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 2.5e-138 496.5 533 53.5
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 9.5e-138 494.6 540 53.9
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 1.6e-137 493.8 533 54.0
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 2.3e-136 490.0 542 53.1
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.2e-135 487.6 540 52.0
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.5e-135 487.3 554 52.0
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 2.2e-134 483.4 518 52.9
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 2.9e-134 483.0 533 52.7
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 3.7e-134 482.6 540 51.7
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 3.2e-133 479.6 535 53.1
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 2.3e-131 473.4 547 51.4
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 1.9e-130 470.3 535 48.8
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 1.9e-130 470.3 537 51.0
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 1.9e-130 470.3 534 52.2
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 2.5e-130 469.9 534 51.5
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 1.6e-129 467.2 510 52.7
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 4.7e-129 465.7 438 57.1
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 1.2e-127 461.1 533 50.8
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 2.6e-127 459.9 532 49.6
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 5.8e-127 458.8 538 50.2
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 4.2e-125 452.6 538 50.4
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 9.3e-125 451.4 536 49.3
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 1.2e-124 451.1 546 49.6
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 7.8e-124 448.4 532 47.0
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 3.9e-123 446.0 537 48.6
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 5.1e-123 445.7 532 48.9
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 2.5e-122 443.4 532 47.0
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 1.6e-121 440.7 546 48.9
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 2.8e-121 439.9 599 45.2
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 3.6e-121 439.5 537 47.1
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 1.1e-120 438.0 538 48.0
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 1.8e-120 437.2 546 48.7
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 3.1e-120 436.4 529 47.6
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 4.0e-120 436.0 539 47.1
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 1.2e-119 434.5 535 46.2
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 1.2e-119 434.5 533 46.7
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 1.2e-119 434.5 529 48.0
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 1.2e-119 434.5 534 47.9
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 1.2e-119 434.5 509 50.7
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 2.6e-119 433.3 537 46.7
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 8.4e-118 428.3 540 47.8
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 4.6e-116 422.5 478 52.7
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 1.0e-115 421.4 541 46.4
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 1.0e-115 421.4 547 47.5
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 1.3e-115 421.0 532 46.2
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 1.7e-115 420.6 547 47.5
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 3.9e-115 419.5 505 49.1
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 6.6e-115 418.7 553 47.2
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 2.5e-114 416.8 545 46.2
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 3.3e-114 416.4 557 45.4
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 3.3e-114 416.4 541 47.1
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 7.3e-114 415.2 514 47.7
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 2.8e-113 413.3 534 47.2
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 4.0e-112 409.5 532 46.2
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 5.3e-112 409.1 542 45.8
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 6.9e-112 408.7 541 46.8
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 9.0e-112 408.3 542 46.3
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 1.2e-111 407.9 538 44.2
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 2.6e-111 406.8 540 45.4
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 4.5e-111 406.0 534 43.8
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 4.5e-111 406.0 536 45.0
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 1.3e-110 404.4 541 46.6
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 1.4e-109 401.0 529 45.2
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 3.2e-109 399.8 533 46.5
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 7.1e-109 398.7 534 44.6
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 9.3e-109 398.3 540 45.0
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 7.9e-108 395.2 497 48.5
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 3.0e-107 393.3 445 49.4
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 3.9e-107 392.9 453 51.0
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 5.6e-106 389.0 532 44.4
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 1.3e-105 387.9 565 42.8
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 1.3e-105 387.9 408 53.9
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 2.1e-105 387.1 537 43.9
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 6.2e-105 385.6 530 43.2
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 1.4e-104 384.4 530 43.4
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 6.9e-104 382.1 535 43.0
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 9.0e-104 381.7 506 46.0
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 1.5e-103 380.9 592 42.1
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 2.0e-103 380.6 538 43.5
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 3.4e-103 379.8 533 43.7
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 7.6e-103 378.6 524 42.9
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 1.1e-101 374.8 424 48.8
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 7.1e-101 372.1 381 54.9
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 1.8e-99 367.5 536 43.3
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 5.1e-99 365.9 537 43.4
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 1.6e-97 360.9 532 42.7
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 2.8e-97 360.1 532 42.7
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 6.2e-97 359.0 537 42.5
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 8.2e-97 358.6 510 42.7
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 1.1e-96 358.2 529 42.7
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 2.4e-96 357.1 519 41.8
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 3.1e-96 356.7 539 42.5
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 3.4e-95 353.2 502 45.4
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 4.2e-93 346.3 519 40.8
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 8.7e-91 338.6 470 44.5
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 2.5e-90 337.0 534 41.0
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 1.0e-86 325.1 531 40.3
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 2.1e-84 317.4 530 40.4
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 4.6e-84 316.2 532 38.9
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 1.0e-83 315.1 544 39.9
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 4.3e-82 309.7 413 47.7
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 4.2e-77 293.1 510 42.0
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 9.4e-77 292.0 283 51.2
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 2.0e-74 284.3 535 38.7
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 7.4e-74 282.3 216 66.2
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 2.4e-72 277.3 216 64.4
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 3.5e-71 273.5 303 48.2
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 1.0e-70 271.9 382 42.4
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 2.5e-69 267.3 337 44.8
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 5.2e-67 259.6 452 36.5
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 5.3e-64 249.6 431 39.0
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 1.3e-62 245.0 494 35.6
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 5.0e-62 243.0 455 36.9
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 5.0e-62 243.0 222 55.9
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 8.5e-62 242.3 298 45.0
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 7.5e-58 229.2 388 39.4
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 1.1e-53 215.3 185 58.9
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 1.5e-45 188.3 135 63.7
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 4.3e-45 186.8 113 78.8
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 1.2e-42 178.7 363 36.4
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 1.3e-38 165.2 202 50.0
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 5.0e-38 163.3 95 81.1
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 4.9e-33 146.7 380 30.8
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 5.0e-30 136.7 251 33.1
PRCOL_00004598 Prasinoderma coloniale HOM05D004208 ORTHO05D005156 4.0e-27 127.1 190 35.8
SHI09778 Sapria himalayana HOM05D004208 ORTHO05D005156 2.0e-26 124.8 316 32.9
FvH4_3g18772 Fragaria vesca HOM05D004208 ORTHO05D198159 3.7e-25 120.6 61 95.1
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 5.4e-24 116.7 228 37.3
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 3.3e-21 107.5 76 63.2
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 8.1e-20 102.8 72 63.9
FvH4_4g16331 Fragaria vesca HOM05D004208 ORTHO05D197324 3.1e-19 100.9 93 63.4
FvH4_5g23491 Fragaria vesca HOM05D039556 ORTHO05D045650 1.0e-14 85.9 52 78.8
FAN03G1009 Fragaria x ananassa HOM05D039556 ORTHO05D045650 2.5e-13 81.3 92 53.3
Atru.chr3.4028 Acer truncatum HOM05D004208 ORTHO05D005156 2.8e-12 77.8 56 64.3
Rhsim01G0263500 Rhododendron simsii HOM05D004208 ORTHO05D005156 8.1e-12 76.3 113 44.2
CDE04G1040 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 9.9e-10 69.3 121 35.5
QL04p049599 Quercus lobata HOM05D000196 ORTHO05D000279 1.9e-08 65.1 45 68.9
HanXRQChr10g0299451 Helianthus annuus HOM05D004208 ORTHO05D219928 7.1e-08 63.2 42 61.9
MD09G1008600 Malus domestica HOM05D004208 ORTHO05D005156 6.0e-07 60.1 74 43.2


User provided reference genes

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