Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G0241 Fragaria x ananassa HOM05D005481 ORTHO05D006779 5.0e-55 218.0 154 100.0
FvH4_4g26130 Fragaria vesca HOM05D005481 ORTHO05D006779 1.4e-49 199.9 143 100.0
FAN12G2411 Fragaria x ananassa HOM05D005481 ORTHO05D006779 1.4e-49 199.9 143 100.0
FAN17G1043 Fragaria x ananassa HOM05D005481 ORTHO05D006779 2.8e-45 185.7 145 93.8
FAN22G2365 Fragaria x ananassa HOM05D005481 ORTHO05D006779 2.6e-43 179.1 143 83.2
FAN07G1071 Fragaria x ananassa HOM05D005481 ORTHO05D006779 7.1e-41 171.0 143 88.8
RcHm_v2.0_Chr4g0433701 Rosa chinensis HOM05D005481 ORTHO05D006779 1.9e-38 162.9 147 75.5
Prupe.1G338200 Prunus persica HOM05D005481 ORTHO05D006779 2.4e-28 129.4 151 76.8
MD13G1015600 Malus domestica HOM05D005481 ORTHO05D006779 6.8e-28 127.9 162 69.8
MD16G1013100 Malus domestica HOM05D005481 ORTHO05D006779 1.2e-27 127.1 160 68.8
CANSAT78G1557 Cannabis sativa HOM05D005481 ORTHO05D006779 6.0e-24 114.8 93 80.6
Hma1.2p1_0095F.1_g047500 Hydrangea macrophylla HOM05D005481 ORTHO05D006779 3.9e-23 112.1 89 79.8
CiPaw.05G158800 Carya illinoinensis HOM05D005481 ORTHO05D006779 1.9e-22 109.8 84 78.6
MELO3C020059.2 Cucumis melo HOM05D005481 ORTHO05D006779 3.3e-22 109.0 130 63.8
ClCG11G000990 Citrullus lanatus HOM05D005481 ORTHO05D006779 4.3e-22 108.6 88 75.0
CsaV3_5G012960 Cucumis sativus L. HOM05D005481 ORTHO05D006779 4.3e-22 108.6 130 63.8
Manes.15G138800 Manihot esculenta HOM05D005481 ORTHO05D006779 4.3e-22 108.6 84 76.2
TPR.G11925 Trifolium pratense HOM05D005481 ORTHO05D006779 5.6e-22 108.2 86 69.8
CSS0011982 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 7.3e-22 107.8 89 77.5
Glyma.05G137400 Glycine max HOM05D005481 ORTHO05D006779 9.6e-22 107.5 87 72.4
Lj4g0017847 Lotus japonicus HOM05D005481 ORTHO05D006779 1.6e-21 106.7 92 63.0
Psat7g085400 Pisum sativum HOM05D005481 ORTHO05D006779 1.6e-21 106.7 90 65.6
COL.COLO4_27578 Corchorus olitorius HOM05D005481 ORTHO05D006779 2.1e-21 106.3 85 67.1
Actinidia37496 Actinidia chinensis HOM05D005481 ORTHO05D006779 2.8e-21 105.9 93 68.8
Ca_18192_v3 Cicer arietinum L. HOM05D005481 ORTHO05D006779 4.8e-21 105.1 92 67.4
QL03p039175 Quercus lobata HOM05D005481 ORTHO05D006779 4.8e-21 105.1 146 56.2
Glyma.08G092700 Glycine max HOM05D005481 ORTHO05D006779 6.2e-21 104.8 87 80.5
Dinv20505 Davidia involucrata HOM05D005481 ORTHO05D006779 1.4e-20 103.6 92 71.7
Dinv20536 Davidia involucrata HOM05D005481 ORTHO05D006779 1.4e-20 103.6 92 71.7
Gohir.A12G153800 Gossypium hirsutum HOM05D005481 ORTHO05D006779 1.4e-20 103.6 85 65.9
Potri.008G139900 Populus trichocarpa HOM05D005481 ORTHO05D006779 1.4e-20 103.6 84 76.2
Sed0010601 Sechium edule HOM05D005481 ORTHO05D006779 1.8e-20 103.2 87 65.5
VMungo0251G2403 Vigna mungo HOM05D005481 ORTHO05D006779 1.8e-20 103.2 88 64.8
CSS0010274 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 3.1e-20 102.4 89 75.3
Duzib268G0472 Durio zibethinus HOM05D005481 ORTHO05D006779 3.1e-20 102.4 85 70.6
PSO063G6983 Papaver somniferum HOM05D005481 ORTHO05D006779 3.1e-20 102.4 93 64.5
PSO782G1235 Papaver somniferum HOM05D005481 ORTHO05D006779 5.3e-20 101.7 92 76.1
TWI77G0967 Tripterygium wilfordii HOM05D005481 ORTHO05D006779 5.3e-20 101.7 85 65.9
Cc11_g05700 Coffea canephora HOM05D005481 ORTHO05D006779 6.9e-20 101.3 95 68.4
Atru.chr11.1002 Acer truncatum HOM05D005481 ORTHO05D006779 9.0e-20 100.9 150 57.3
Eucgr.G02069 Eucalyptus grandis HOM05D005481 ORTHO05D006779 1.2e-19 100.5 94 71.3
Cfa022222 Carpinus fangiana HOM05D005481 ORTHO05D006779 1.5e-19 100.1 83 69.9
Gorai.008G169700 Gossypium raimondii HOM05D005481 ORTHO05D006779 2.6e-19 99.4 85 68.2
Phvul.002G184200 Phaseolus vulgaris HOM05D005481 ORTHO05D006779 2.6e-19 99.4 88 63.6
Gohir.D12G156900 Gossypium hirsutum HOM05D005481 ORTHO05D006779 4.4e-19 98.6 85 67.1
Actinidia20106 Actinidia chinensis HOM05D005481 ORTHO05D006779 5.8e-19 98.2 93 69.9
TWI74G0731 Tripterygium wilfordii HOM05D005481 ORTHO05D006779 5.8e-19 98.2 85 65.9
ATR0598G125 Amborella trichopoda HOM05D005481 ORTHO05D006779 9.9e-19 97.4 84 61.9
GSVIVG01011593001 Vitis vinifera HOM05D005481 ORTHO05D006779 1.3e-18 97.1 89 62.9
Aa31LG9G8490 Aethionema arabicum HOM05D005481 ORTHO05D006779 1.7e-18 96.7 91 65.9
Migut.E00569 Erythranthe guttata HOM05D005481 ORTHO05D006779 1.7e-18 96.7 93 57.0
MBI19_g01916_MAGBIO Magnolia biondii HOM05D005481 ORTHO05D006779 2.2e-18 96.3 88 71.6
Lalb_Chr07g0187931 Lupinus albus HOM05D005481 ORTHO05D006779 2.9e-18 95.9 85 62.4
SalBow2G3020 Salvia bowleyana HOM05D005481 ORTHO05D006779 4.9e-18 95.1 86 61.6
Solyc04g008340.2 Solanum lycopersicum HOM05D005481 ORTHO05D006779 6.4e-18 94.7 96 59.4
Sopen04g003490 Solanum pennellii HOM05D005481 ORTHO05D006779 6.4e-18 94.7 96 62.5
BcaC08g45996 Brassica carinata HOM05D005481 ORTHO05D006779 8.4e-18 94.4 87 62.1
AL2G26810 Arabidopsis lyrata HOM05D005481 ORTHO05D006779 1.9e-17 93.2 84 60.7
CAN.G966.8 Capsicum annuum HOM05D005481 ORTHO05D006779 1.9e-17 93.2 95 64.2
A07p32160 Brassica napus HOM05D005481 ORTHO05D006779 2.4e-17 92.8 84 63.1
C06p41930 Brassica napus HOM05D005481 ORTHO05D006779 2.4e-17 92.8 84 67.9
BraA07t30846Z Brassica rapa HOM05D005481 ORTHO05D006779 2.4e-17 92.8 84 63.1
A07p34580 Brassica napus HOM05D005481 ORTHO05D006779 4.2e-17 92.0 84 61.9
BraA07t31076Z Brassica rapa HOM05D005481 ORTHO05D006779 4.2e-17 92.0 84 61.9
AT1G68100 Arabidopsis thaliana HOM05D005481 ORTHO05D006779 5.4e-17 91.7 84 60.7
MSTRG.13650 Avicennia marina HOM05D005481 ORTHO05D006779 5.4e-17 91.7 88 58.0
BcaB03g15132 Brassica carinata HOM05D005481 ORTHO05D006779 5.4e-17 91.7 84 61.9
BcaC08g45998 Brassica carinata HOM05D005481 ORTHO05D006779 5.4e-17 91.7 84 66.7
BolC6t38892H Brassica oleracea HOM05D005481 ORTHO05D006779 5.4e-17 91.7 84 66.7
ECA234G1527 Erigeron canadensis HOM05D005481 ORTHO05D006779 5.4e-17 91.7 88 68.2
C06p37930 Brassica napus HOM05D005481 ORTHO05D006779 9.3e-17 90.9 84 65.5
SGA_v2.0_scaffold65G22147 Striga asiatica HOM05D005481 ORTHO05D006779 9.3e-17 90.9 94 55.3
Sp5g23100 Schrenkiella parvula HOM05D005481 ORTHO05D006779 1.6e-16 90.1 84 66.7
BcaC08g46237 Brassica carinata HOM05D005481 ORTHO05D006779 2.7e-16 89.4 84 66.7
BolC6t39238H Brassica oleracea HOM05D005481 ORTHO05D006779 2.7e-16 89.4 84 66.7
CARHR060770 Cardamine hirsuta HOM05D005481 ORTHO05D006779 2.7e-16 89.4 84 59.5
THA.LOC104821909 Tarenaya hassleriana HOM05D005481 ORTHO05D006779 2.7e-16 89.4 84 61.9
Thhalv10018501m.g Eutrema salsugineum HOM05D005481 ORTHO05D006779 3.5e-16 89.0 84 66.7
Aqoxy3G04008 Aquilegia oxysepala HOM05D005481 ORTHO05D006779 4.6e-16 88.6 84 59.5
Carub.0002s1458 Capsella rubella HOM05D005481 ORTHO05D006779 6.0e-16 88.2 84 65.5
Zm00001eb037820 Zea mays HOM05D005481 ORTHO05D006779 7.9e-16 87.8 90 65.6
Lsat_1_v5_gn_4_24241 Lactuca sativa HOM05D005481 ORTHO05D006779 1.0e-15 87.4 97 62.9
CDE05G3246 Ceratophyllum demersum HOM05D005481 ORTHO05D006779 1.3e-15 87.0 84 58.3
HanXRQChr17g0566271 Helianthus annuus HOM05D005481 ORTHO05D006779 2.3e-15 86.3 93 53.8
unitig_22.g5612 Utricularia gibba HOM05D005481 ORTHO05D006779 8.7e-15 84.3 85 55.3
HPP92_005759 Vanilla planifolia HOM05D005481 ORTHO05D006779 1.1e-14 84.0 84 70.2
Os08g0467400 Oryza sativa ssp. japonica HOM05D005481 ORTHO05D006779 2.5e-14 82.8 95 57.9
Sc10g0004950 Simmondsia chinensis HOM05D005481 ORTHO05D006779 4.3e-14 82.0 86 53.5
arahy.Tifrunner.gnm1.ann1.31BYXQ Arachis hypogaea HOM05D005481 ORTHO05D006779 9.6e-14 80.9 50 80.0
EL10Ac8g18625 Beta vulgaris HOM05D005481 ORTHO05D006779 3.6e-13 79.0 77 67.5
Mapoly0096s0003 Marchantia polymorpha HOM05D005481 ORTHO05D006779 8.1e-13 77.8 89 58.4
Mapoly0096s0004 Marchantia polymorpha HOM05D005481 ORTHO05D006779 8.1e-13 77.8 89 58.4
CDE05G2094 Ceratophyllum demersum HOM05D005481 ORTHO05D006779 1.8e-12 76.6 81 53.1
Pp3c12_24640 Physcomitrium patens HOM05D005481 ORTHO05D006779 1.7e-10 70.1 84 45.2
TAR622G0189 Trochodendron aralioides HOM05D005481 ORTHO05D006779 2.2e-10 69.7 39 89.7
Oeu062663.1 Olea europaea HOM05D005481 ORTHO05D006779 2.9e-10 69.3 39 87.2
AUR62033487 Chenopodium quinoa HOM05D005481 ORTHO05D006779 3.8e-10 68.9 46 69.6
Haze_10808 Corylus avellana HOM05D005481 ORTHO05D006779 1.4e-09 67.0 64 70.3
Hund03668 Selenicereus undatus HOM05D005481 ORTHO05D006779 1.9e-09 66.6 45 71.1
SEGI_02848 Sequoiadendron giganteum HOM05D005481 ORTHO05D006779 1.8e-07 60.1 39 79.5
SMO164G0085 Selaginella moellendorffii HOM05D005481 ORTHO05D006779 3.0e-07 59.3 85 43.5
Rhsim09G0085400 Rhododendron simsii HOM05D005481 ORTHO05D006779 1.9e-06 56.6 116 41.4


User provided reference genes

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