Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G0185 Fragaria x ananassa HOM05D005909 ORTHO05D007481 5.5e-192 674.1 332 100.0
FAN12G0127 Fragaria x ananassa HOM05D005909 ORTHO05D007481 2.9e-172 608.6 332 93.1
FvH4_4g26720 Fragaria vesca HOM05D005909 ORTHO05D007481 5.2e-158 561.2 311 92.3
FAN22G0620 Fragaria x ananassa HOM05D005909 ORTHO05D007481 1.9e-155 552.7 312 90.7
FAN07G1481 Fragaria x ananassa HOM05D005909 ORTHO05D007481 3.5e-154 548.5 335 85.7
RcHm_v2.0_Chr4g0434411 Rosa chinensis HOM05D005909 ORTHO05D007481 5.6e-152 541.2 311 88.1
Prupe.1G316800 Prunus persica HOM05D005909 ORTHO05D007481 1.2e-141 506.9 311 81.4
MD16G1037200 Malus domestica HOM05D005909 ORTHO05D007481 1.1e-136 490.3 311 79.1
CSS0033004 Camellia sinensis var. sinensis HOM05D005909 ORTHO05D007481 2.3e-129 466.1 308 75.3
Cfa015837 Carpinus fangiana HOM05D005909 ORTHO05D007481 3.9e-129 465.3 308 74.4
Manes.06G064900 Manihot esculenta HOM05D005909 ORTHO05D007481 6.7e-129 464.5 307 76.5
QL01p010815 Quercus lobata HOM05D005909 ORTHO05D007481 2.5e-128 462.6 306 74.5
QL93p0145_0024 Quercus lobata HOM05D005909 ORTHO05D007481 2.5e-128 462.6 306 74.5
Ciclev10015519m.g Citrus clementina HOM05D005909 ORTHO05D007481 7.4e-128 461.1 307 74.3
TAR622G1259 Trochodendron aralioides HOM05D005909 ORTHO05D007481 1.3e-127 460.3 306 74.5
Hma1.2p1_2306F.1_g319360 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 2.8e-127 459.1 306 74.8
Hma1.2p1_1314F.1_g274990 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 1.1e-126 457.2 306 74.5
Atru.chr11.237 Acer truncatum HOM05D005909 ORTHO05D007481 2.4e-126 456.1 306 75.5
TPR.G4906 Trifolium pratense HOM05D005909 ORTHO05D007481 5.3e-126 454.9 307 72.6
Nn4g23953 Nelumbo nucifera HOM05D005909 ORTHO05D007481 6.9e-126 454.5 307 73.9
CiPaw.05G242600 Carya illinoinensis HOM05D005909 ORTHO05D007481 9.0e-126 454.1 311 74.0
Medtr1g109590 Medicago truncatula HOM05D005909 ORTHO05D007481 1.2e-125 453.8 307 73.0
Sabra10G0090400 Salix brachista HOM05D005909 ORTHO05D007481 1.2e-125 453.8 306 74.2
vmacro10599 Vaccinium macrocarpon HOM05D005909 ORTHO05D007481 1.2e-125 453.8 306 74.2
Glyma.20G120600 Glycine max HOM05D005909 ORTHO05D007481 1.5e-125 453.4 307 70.7
FAN17G2694 Fragaria x ananassa HOM05D005909 ORTHO05D007481 2.6e-125 452.6 250 91.6
Potri.010G120200 Populus trichocarpa HOM05D005909 ORTHO05D007481 9.9e-125 450.7 305 74.4
Actinidia14921 Actinidia chinensis HOM05D005909 ORTHO05D007481 3.8e-124 448.7 306 73.2
arahy.Tifrunner.gnm1.ann1.W577BF Arachis hypogaea HOM05D005909 ORTHO05D007481 3.8e-124 448.7 307 72.3
Lj5g0016761 Lotus japonicus HOM05D005909 ORTHO05D007481 3.8e-124 448.7 307 72.0
Rhsim09G0103900 Rhododendron simsii HOM05D005909 ORTHO05D007481 4.9e-124 448.4 322 70.5
arahy.Tifrunner.gnm1.ann1.IU6D7D Arachis hypogaea HOM05D005909 ORTHO05D007481 6.4e-124 448.0 310 71.6
Ca_06889_v3 Cicer arietinum L. HOM05D005909 ORTHO05D007481 6.4e-124 448.0 307 72.0
Psat6g224680 Pisum sativum HOM05D005909 ORTHO05D007481 8.4e-124 447.6 307 71.7
GSVIVG01011843001 Vitis vinifera HOM05D005909 ORTHO05D007481 1.4e-123 446.8 308 73.7
Lalb_Chr21g0308731 Lupinus albus HOM05D005909 ORTHO05D007481 1.9e-123 446.4 307 72.0
COL.COLO4_32148 Corchorus olitorius HOM05D005909 ORTHO05D007481 5.5e-123 444.9 306 72.9
DCAR_007264 Daucus carota HOM05D005909 ORTHO05D007481 3.5e-122 442.2 305 72.8
VMungo0720G1068 Vigna mungo HOM05D005909 ORTHO05D007481 3.5e-122 442.2 309 69.9
CAN.G610.24 Capsicum annuum HOM05D005909 ORTHO05D007481 2.3e-121 439.5 306 71.2
HanXRQChr15g0477421 Helianthus annuus HOM05D005909 ORTHO05D007481 3.0e-121 439.1 308 71.1
Phvul.007G032000 Phaseolus vulgaris HOM05D005909 ORTHO05D007481 3.9e-121 438.7 309 68.6
MBI16_g44832_MAGBIO Magnolia biondii HOM05D005909 ORTHO05D007481 1.1e-120 437.2 301 72.4
TWI79G1572 Tripterygium wilfordii HOM05D005909 ORTHO05D007481 1.5e-120 436.8 306 72.2
Nitab4.5_0002112g0090 Nicotiana tabacum HOM05D005909 ORTHO05D007481 1.9e-120 436.4 306 71.2
MELO3C005340.2 Cucumis melo HOM05D005909 ORTHO05D007481 2.5e-120 436.0 308 69.2
Cc11_g09670 Coffea canephora HOM05D005909 ORTHO05D007481 4.3e-120 435.3 306 70.3
Lsat_1_v5_gn_3_62021 Lactuca sativa HOM05D005909 ORTHO05D007481 9.6e-120 434.1 310 70.6
Sed0017467 Sechium edule HOM05D005909 ORTHO05D007481 9.6e-120 434.1 308 70.1
CsaV3_5G028790 Cucumis sativus L. HOM05D005909 ORTHO05D007481 1.6e-119 433.3 308 68.8
Solyc05g008870.3 Solanum lycopersicum HOM05D005909 ORTHO05D007481 2.8e-119 432.6 306 70.6
Sopen05g004630 Solanum pennellii HOM05D005909 ORTHO05D007481 2.8e-119 432.6 306 70.6
Eucgr.G02238 Eucalyptus grandis HOM05D005909 ORTHO05D007481 4.8e-119 431.8 305 70.2
PGR119G2457 Punica granatum HOM05D005909 ORTHO05D007481 6.2e-119 431.4 308 68.8
Nitab4.5_0000694g0120 Nicotiana tabacum HOM05D005909 ORTHO05D007481 8.2e-119 431.0 307 71.0
BcaC06g34207 Brassica carinata HOM05D005909 ORTHO05D007481 1.1e-118 430.6 307 68.4
Aqoxy3G04056 Aquilegia oxysepala HOM05D005909 ORTHO05D007481 4.0e-118 428.7 308 70.5
Duzib248G1493 Durio zibethinus HOM05D005909 ORTHO05D007481 5.3e-118 428.3 306 70.6
SalBow8G3248 Salvia bowleyana HOM05D005909 ORTHO05D007481 1.2e-117 427.2 306 70.6
SalBow8G0352 Salvia bowleyana HOM05D005909 ORTHO05D007481 3.4e-117 425.6 304 70.7
C07p31670 Brassica napus HOM05D005909 ORTHO05D007481 2.2e-116 422.9 308 67.9
BolC7t43706H Brassica oleracea HOM05D005909 ORTHO05D007481 2.2e-116 422.9 308 67.9
Gohir.D02G171900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 2.2e-116 422.9 307 69.1
Aa31LG2G8670 Aethionema arabicum HOM05D005909 ORTHO05D007481 3.8e-116 422.2 314 67.5
CARHR143760 Cardamine hirsuta HOM05D005909 ORTHO05D007481 3.8e-116 422.2 306 69.0
THA.LOC104823950 Tarenaya hassleriana HOM05D005909 ORTHO05D007481 6.5e-116 421.4 311 68.2
ECA246G0525 Erigeron canadensis HOM05D005909 ORTHO05D007481 8.4e-116 421.0 307 69.1
PSO782G5715 Papaver somniferum HOM05D005909 ORTHO05D007481 1.1e-115 420.6 307 68.1
Gohir.A03G148900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 4.2e-115 418.7 314 68.2
Gorai.005G193400 Gossypium raimondii HOM05D005909 ORTHO05D007481 4.2e-115 418.7 314 68.2
AL5G10170 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 3.5e-114 415.6 307 67.4
Sp2g12680 Schrenkiella parvula HOM05D005909 ORTHO05D007481 4.6e-114 415.2 306 66.3
Hund20744 Selenicereus undatus HOM05D005909 ORTHO05D007481 4.6e-114 415.2 309 69.3
Lj6A753G52 Lonicera japonica HOM05D005909 ORTHO05D007481 6.0e-114 414.8 308 69.5
A06p44550 Brassica napus HOM05D005909 ORTHO05D007481 1.8e-113 413.3 308 66.6
Haze_00654 Corylus avellana HOM05D005909 ORTHO05D007481 2.3e-113 412.9 440 53.0
Sc14g0007280 Simmondsia chinensis HOM05D005909 ORTHO05D007481 3.0e-113 412.5 307 68.7
Ah.03g138370 Amaranthus hybridus HOM05D005909 ORTHO05D007481 6.7e-113 411.4 332 63.9
BraA06t27329Z Brassica rapa HOM05D005909 ORTHO05D007481 6.7e-113 411.4 313 66.1
AT2G01220 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 8.7e-113 411.0 307 67.1
MSTRG.13555 Avicennia marina HOM05D005909 ORTHO05D007481 1.1e-112 410.6 306 67.3
AUR62037268 Chenopodium quinoa HOM05D005909 ORTHO05D007481 2.2e-111 406.4 307 65.5
AUR62002812 Chenopodium quinoa HOM05D005909 ORTHO05D007481 6.3e-111 404.8 307 65.5
CANSAT01G0643 Cannabis sativa HOM05D005909 ORTHO05D007481 8.2e-111 404.4 281 73.0
Cpa.g.sc65.66 Carica papaya HOM05D005909 ORTHO05D007481 3.1e-110 402.5 308 67.5
EL10Ac6g14305 Beta vulgaris HOM05D005909 ORTHO05D007481 4.1e-110 402.1 308 62.7
CDE08G1136 Ceratophyllum demersum HOM05D005909 ORTHO05D007481 2.2e-108 396.4 307 64.8
ATR0807G244 Amborella trichopoda HOM05D005909 ORTHO05D007481 3.2e-107 392.5 308 62.0
HPP92_024514 Vanilla planifolia HOM05D005909 ORTHO05D007481 4.2e-107 392.1 306 64.4
Thhalv10000909m.g Eutrema salsugineum HOM05D005909 ORTHO05D007481 1.6e-106 390.2 296 65.9
Zm00001eb360650 Zea mays HOM05D005909 ORTHO05D007481 1.3e-105 387.1 306 63.4
Dinv16136 Davidia involucrata HOM05D005909 ORTHO05D007481 3.9e-105 385.6 306 65.4
CARHR148990 Cardamine hirsuta HOM05D005909 ORTHO05D007481 7.4e-104 381.3 305 61.0
unitig_699.g19483 Utricularia gibba HOM05D005909 ORTHO05D007481 3.7e-103 379.0 306 63.4
AL5G17030 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 4.8e-103 378.6 306 61.8
Peaxi162Scf00179g00534 Petunia axillaris HOM05D005909 ORTHO05D007481 5.3e-102 375.2 306 63.7
Dinv31596 Davidia involucrata HOM05D005909 ORTHO05D007481 2.6e-101 372.9 306 64.1
Migut.E00369 Erythranthe guttata HOM05D005909 ORTHO05D007481 7.7e-101 371.3 284 67.3
PSO063G1187 Papaver somniferum HOM05D005909 ORTHO05D007481 7.7e-101 371.3 274 68.2
Carub.0005s0605 Capsella rubella HOM05D005909 ORTHO05D007481 3.8e-100 369.0 308 61.4
ClCG01G005900 Citrullus lanatus HOM05D005909 ORTHO05D007481 5.5e-99 365.2 308 62.0
TAR622G0977 Trochodendron aralioides HOM05D005909 ORTHO05D007481 5.5e-99 365.2 245 73.5
AT3G27610 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 3.6e-98 362.5 307 59.9
Carub.0005s0021 Capsella rubella HOM05D005909 ORTHO05D007481 4.7e-98 362.1 278 66.2
Thecc.02G222000 Theobroma cacao HOM05D005909 ORTHO05D007481 7.4e-88 328.2 235 72.3
Actinidia16683 Actinidia chinensis HOM05D005909 ORTHO05D007481 3.7e-79 299.3 237 65.0
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 8.5e-76 288.1 308 47.7
Mapoly0100s0051 Marchantia polymorpha HOM05D005909 ORTHO05D007481 8.5e-76 288.1 310 48.7
Oeu027686.1 Olea europaea HOM05D005909 ORTHO05D007481 2.8e-71 273.1 231 63.6
SMO196G0003 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 2.4e-70 270.0 327 43.7
Pp3c12_7340 Physcomitrium patens HOM05D005909 ORTHO05D007481 3.1e-70 269.6 306 46.4
Pp3c3_16750 Physcomitrium patens HOM05D005909 ORTHO05D007481 1.3e-68 264.2 307 44.6
SGA_v2.0_scaffold14G06901 Striga asiatica HOM05D005909 ORTHO05D007481 1.1e-62 244.6 142 82.4
Os01g0691500 Oryza sativa ssp. japonica HOM05D005909 ORTHO05D007481 7.8e-53 211.8 198 55.6
SGA_v2.0_scaffold14G06904 Striga asiatica HOM05D005909 ORTHO05D007481 1.7e-44 184.1 163 60.1
SEGI_29486 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 7.1e-38 162.2 110 68.2
PRCOL_00006609 Prasinoderma coloniale HOM05D005909 ORTHO05D007481 1.7e-36 157.5 337 33.8
Cre06.g278116 Chlamydomonas reinhardtii HOM05D005909 ORTHO05D007481 9.5e-35 151.8 355 31.0
MCO06G004 Micromonas commoda HOM05D005909 ORTHO05D007481 2.1e-34 150.6 317 33.1
Carub.0005s0593 Capsella rubella HOM05D005909 ORTHO05D007481 3.0e-28 130.2 151 49.0
CBR_g39317 Chara braunii HOM05D005909 ORTHO05D007481 3.3e-27 126.7 203 36.0
CiPaw.05G241800 Carya illinoinensis HOM05D005909 ORTHO05D007481 1.9e-22 110.9 63 84.1
arahy.Tifrunner.gnm1.ann1.XNS652 Arachis hypogaea HOM05D005909 ORTHO05D007481 5.6e-19 99.4 163 41.7
TPR.G28941 Trifolium pratense HOM05D000324 ORTHO05D004875 6.9e-17 92.4 76 63.2
SMO265G0018 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 1.2e-16 91.7 154 36.4
SMO163G0092 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 4.5e-16 89.7 162 36.4
PGSC0003DMG401030529 Solanum tuberosum HOM05D005909 ORTHO05D007481 6.4e-15 85.9 62 66.1
Gohir.D12G121400 Gossypium hirsutum HOM05D005909 ORTHO05D046826 1.5e-11 74.7 36 97.2
SEGI_08541 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 3.3e-11 73.6 63 55.6
CBR_g39316 Chara braunii HOM05D000019 ORTHO05D000002 5.6e-11 72.8 72 50.0
SEGI_32432 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 1.1e-09 68.6 86 44.2
Gorai.008G132300 Gossypium raimondii HOM05D005909 ORTHO05D046826 1.8e-09 67.8 36 88.9
SMO146G0235 Selaginella moellendorffii HOM05D020292 ORTHO05D030583 9.0e-09 65.5 126 34.1


User provided reference genes

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