Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G0151 Fragaria x ananassa HOM05D005075 ORTHO05D007097 0.0e+00 1567.4 784 100.0
FAN07G0914 Fragaria x ananassa HOM05D005075 ORTHO05D007097 0.0e+00 1419.8 784 91.7
FvH4_4g24220 Fragaria vesca HOM05D005075 ORTHO05D007097 0.0e+00 1399.8 784 91.1
RcHm_v2.0_Chr4g0431061 Rosa chinensis HOM05D005075 ORTHO05D007097 0.0e+00 1239.6 781 81.3
Prupe.1G232900 Prunus persica HOM05D005075 ORTHO05D007097 0.0e+00 1166.4 785 75.7
MD13G1113200 Malus domestica HOM05D005075 ORTHO05D007097 0.0e+00 1164.1 780 75.6
CANSAT01G2132 Cannabis sativa HOM05D005075 ORTHO05D007097 2.7e-311 1071.6 772 68.5
QL03p054705 Quercus lobata HOM05D005075 ORTHO05D007097 2.7e-306 1055.0 746 70.6
TWI18G0401 Tripterygium wilfordii HOM05D005075 ORTHO05D007097 3.9e-305 1051.2 775 68.3
Haze_12371 Corylus avellana HOM05D005075 ORTHO05D007097 1.4e-302 1042.7 779 67.8
CSS0028948 Camellia sinensis var. sinensis HOM05D005075 ORTHO05D007097 5.1e-297 1024.2 776 66.8
COL.COLO4_23627 Corchorus olitorius HOM05D005075 ORTHO05D007097 8.8e-297 1023.5 775 65.5
GSVIVG01010340001 Vitis vinifera HOM05D005075 ORTHO05D007097 6.3e-295 1017.3 741 68.4
Sabra08G0136200 Salix brachista HOM05D005075 ORTHO05D007097 1.1e-294 1016.5 810 64.9
Ciclev10030830m.g Citrus clementina HOM05D005075 ORTHO05D007097 2.4e-294 1015.4 760 67.1
Hma1.2p1_0167F.1_g073740 Hydrangea macrophylla HOM05D005075 ORTHO05D007097 4.5e-293 1011.1 771 65.2
Thecc.02G274600 Theobroma cacao HOM05D005075 ORTHO05D007097 1.3e-292 1009.6 776 63.8
Gorai.005G171200 Gossypium raimondii HOM05D005075 ORTHO05D007097 8.0e-290 1000.3 776 64.2
Gohir.A03G128400 Gossypium hirsutum HOM05D005075 ORTHO05D007097 1.5e-288 996.1 776 64.2
Dinv14804 Davidia involucrata HOM05D005075 ORTHO05D007097 1.1e-286 989.9 774 64.7
Cpa.g.sc27.216 Carica papaya HOM05D005075 ORTHO05D007097 2.0e-285 985.7 780 64.1
Lj3A1065G86 Lonicera japonica HOM05D005075 ORTHO05D007097 4.5e-285 984.6 776 64.0
Sed0000829 Sechium edule HOM05D005075 ORTHO05D007097 1.9e-283 979.2 770 63.8
Rhsim12G0029800 Rhododendron simsii HOM05D005075 ORTHO05D007097 1.6e-282 976.1 804 62.7
ClCG06G008480 Citrullus lanatus HOM05D005075 ORTHO05D007097 2.7e-282 975.3 767 63.4
Phvul.001G259800 Phaseolus vulgaris HOM05D005075 ORTHO05D007097 6.1e-282 974.2 772 63.2
Glyma.11G248400 Glycine max HOM05D005075 ORTHO05D007097 3.0e-281 971.8 777 62.8
CsaV3_5G015350 Cucumis sativus L. HOM05D005075 ORTHO05D007097 1.2e-280 969.9 773 62.2
PGR119G0347 Punica granatum HOM05D005075 ORTHO05D007097 1.5e-280 969.5 748 65.2
MELO3C018283.2 Cucumis melo HOM05D005075 ORTHO05D007097 2.0e-280 969.1 773 62.0
AT1G24340 Arabidopsis thaliana HOM05D005075 ORTHO05D007097 7.5e-280 967.2 772 62.6
Aqoxy3G01457 Aquilegia oxysepala HOM05D005075 ORTHO05D007097 2.2e-279 965.7 744 64.9
Carub.0001s2573 Capsella rubella HOM05D005075 ORTHO05D007097 6.3e-279 964.1 772 62.4
CARHR026760 Cardamine hirsuta HOM05D005075 ORTHO05D007097 5.9e-277 957.6 772 62.3
THA.LOC104799053 Tarenaya hassleriana HOM05D005075 ORTHO05D007097 5.9e-277 957.6 771 61.9
DCAR_024086 Daucus carota HOM05D005075 ORTHO05D007097 1.0e-276 956.8 745 65.0
VMungo1383G1024 Vigna mungo HOM05D005075 ORTHO05D007097 6.5e-276 954.1 771 62.0
BcaC06g35258 Brassica carinata HOM05D005075 ORTHO05D007097 8.5e-276 953.7 772 61.7
Ca_16480_v3 Cicer arietinum L. HOM05D005075 ORTHO05D007097 1.5e-275 953.0 772 62.3
Eucgr.H04663 Eucalyptus grandis HOM05D005075 ORTHO05D007097 4.2e-275 951.4 727 65.1
Thhalv10006951m.g Eutrema salsugineum HOM05D005075 ORTHO05D007097 1.2e-274 949.9 772 61.5
Lj3g0026022 Lotus japonicus HOM05D005075 ORTHO05D007097 2.7e-274 948.7 772 61.4
A07p12060 Brassica napus HOM05D005075 ORTHO05D007097 8.0e-274 947.2 772 61.3
Cc11_g16630 Coffea canephora HOM05D005075 ORTHO05D007097 8.0e-274 947.2 773 60.7
Lalb_Chr23g0277981 Lupinus albus HOM05D005075 ORTHO05D007097 1.4e-273 946.4 775 61.7
Nn4g22400 Nelumbo nucifera HOM05D005075 ORTHO05D007097 1.4e-273 946.4 768 62.2
C07p18000 Brassica napus HOM05D005075 ORTHO05D007097 3.0e-273 945.3 772 61.0
BolC7t42310H Brassica oleracea HOM05D005075 ORTHO05D007097 3.0e-273 945.3 772 60.9
Sp1g23430 Schrenkiella parvula HOM05D005075 ORTHO05D007097 4.0e-273 944.9 774 61.5
AL1G40580 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 5.2e-273 944.5 772 61.1
HanXRQChr08g0233581 Helianthus annuus HOM05D005075 ORTHO05D007097 5.2e-273 944.5 767 62.2
BraA07t28994Z Brassica rapa HOM05D005075 ORTHO05D007097 1.5e-272 943.0 772 60.9
Psat5g094520 Pisum sativum HOM05D005075 ORTHO05D007097 2.6e-272 942.2 771 61.6
arahy.Tifrunner.gnm1.ann1.S726NC Arachis hypogaea HOM05D005075 ORTHO05D007097 3.4e-272 941.8 773 61.6
vmacro01083 Vaccinium macrocarpon HOM05D005075 ORTHO05D007097 4.4e-272 941.4 816 59.9
AL6G39900 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 7.5e-272 940.6 774 60.7
ECA233G3670 Erigeron canadensis HOM05D005075 ORTHO05D007097 1.3e-271 939.9 717 64.4
PSO782G5362 Papaver somniferum HOM05D005075 ORTHO05D007097 1.1e-270 936.8 773 62.6
Potri.008G178400 Populus trichocarpa HOM05D005075 ORTHO05D007097 4.1e-270 934.9 675 69.3
TPR.G22444 Trifolium pratense HOM05D005075 ORTHO05D007097 4.1e-270 934.9 775 60.4
Carub.0007s3241 Capsella rubella HOM05D005075 ORTHO05D007097 1.2e-269 933.3 772 60.9
MBI08_g36442_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 2.7e-269 932.2 743 63.8
Medtr3g085660 Medicago truncatula HOM05D005075 ORTHO05D007097 8.6e-268 927.2 799 58.9
Oeu056679.1 Olea europaea HOM05D005075 ORTHO05D007097 2.3e-265 919.1 774 59.4
arahy.Tifrunner.gnm1.ann1.I0S54J Arachis hypogaea HOM05D005075 ORTHO05D007097 8.9e-265 917.1 773 60.5
Migut.K00700 Erythranthe guttata HOM05D005075 ORTHO05D007097 2.0e-264 916.0 774 59.2
PGSC0003DMG400022618 Solanum tuberosum HOM05D005075 ORTHO05D007097 7.5e-264 914.1 743 61.9
Aa31LG7G9750 Aethionema arabicum HOM05D005075 ORTHO05D007097 1.3e-263 913.3 772 60.8
Nitab4.5_0002129g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 1.3e-263 913.3 774 61.1
Solyc05g006810.4 Solanum lycopersicum HOM05D005075 ORTHO05D007097 7.0e-262 907.5 743 61.6
SalBow1G5463 Salvia bowleyana HOM05D005075 ORTHO05D007097 5.0e-260 901.4 788 58.2
SalBow1G4350 Salvia bowleyana HOM05D005075 ORTHO05D007097 3.3e-259 898.7 788 58.1
Nitab4.5_0000537g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 2.1e-258 896.0 801 58.4
Manes.13G016100 Manihot esculenta HOM05D005075 ORTHO05D007097 2.0e-256 889.4 773 59.5
Peaxi162Scf00804g00120 Petunia axillaris HOM05D005075 ORTHO05D007097 2.8e-250 869.0 766 59.0
EL10Ac6g13442 Beta vulgaris HOM05D005075 ORTHO05D007097 3.6e-250 868.6 728 61.1
Hund25442 Selenicereus undatus HOM05D005075 ORTHO05D007097 3.1e-249 865.5 712 61.9
Nitab4.5_0001802g0060 Nicotiana tabacum HOM05D005075 ORTHO05D007097 7.5e-248 860.9 773 58.1
AUR62005575 Chenopodium quinoa HOM05D005075 ORTHO05D007097 7.3e-243 844.3 789 57.8
SGA_v2.0_scaffold14G07137 Striga asiatica HOM05D005075 ORTHO05D007097 2.8e-242 842.4 776 56.2
Zm00001eb014870 Zea mays HOM05D005075 ORTHO05D007097 1.1e-238 830.5 733 56.8
ATR0824G188 Amborella trichopoda HOM05D005075 ORTHO05D007097 5.6e-235 818.1 750 55.6
Lsat_1_v5_gn_8_149841 Lactuca sativa HOM05D005075 ORTHO05D007097 9.9e-232 807.4 1062 44.4
Peaxi162Scf00634g00011 Petunia axillaris HOM05D005075 ORTHO05D007097 5.4e-230 801.6 742 57.1
Duzib251G0605 Durio zibethinus HOM05D005075 ORTHO05D007097 9.2e-230 800.8 776 55.5
TAR374G0458 Trochodendron aralioides HOM05D005075 ORTHO05D007097 7.8e-229 797.7 612 66.8
Sc11g0000650 Simmondsia chinensis HOM05D005075 ORTHO05D007097 1.5e-227 793.5 609 64.2
PSO063G5600 Papaver somniferum HOM05D005075 ORTHO05D007097 1.6e-226 790.0 678 60.6
Cfa009316 Carpinus fangiana HOM05D005075 ORTHO05D007097 1.3e-223 780.4 594 66.8
Gohir.D02G152200 Gossypium hirsutum HOM05D005075 ORTHO05D007097 2.7e-221 772.7 517 71.0
AUR62024155 Chenopodium quinoa HOM05D005075 ORTHO05D007097 5.6e-219 765.0 700 57.6
Sopen05g002750 Solanum pennellii HOM05D005075 ORTHO05D007097 9.6e-219 764.2 569 65.2
CDE02G1220 Ceratophyllum demersum HOM05D005075 ORTHO05D007097 2.8e-210 736.1 734 53.3
Ah.03g133860 Amaranthus hybridus HOM05D005075 ORTHO05D007097 8.2e-202 708.0 734 52.2
unitig_747.g21130 Utricularia gibba HOM05D005075 ORTHO05D007097 6.7e-196 688.3 581 58.5
SHI17941 Sapria himalayana HOM05D005075 ORTHO05D007097 1.8e-188 663.7 641 54.4
Glyma.18G008800 Glycine max HOM05D005075 ORTHO05D007097 1.2e-181 641.0 493 64.9
SMO356G0356 Selaginella moellendorffii HOM05D005075 ORTHO05D007097 8.8e-172 608.2 751 45.0
Mapoly0042s0063 Marchantia polymorpha HOM05D005075 ORTHO05D007097 2.6e-168 596.7 714 44.1
CiPaw.05G114700 Carya illinoinensis HOM05D005075 ORTHO05D007097 7.0e-153 545.4 430 64.7
SEGI_08672 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 3.4e-139 500.0 485 51.5
HPP92_001259 Vanilla planifolia HOM05D005075 ORTHO05D007097 1.7e-138 497.7 452 56.4
Pp3c26_6380 Physcomitrium patens HOM05D005075 ORTHO05D007097 3.5e-136 490.0 531 47.3
CAN.G2246.1 Capsicum annuum HOM05D005075 ORTHO05D007097 5.8e-131 472.6 393 59.8
TPR.G9414 Trifolium pratense HOM05D005075 ORTHO05D007097 5.2e-124 449.5 450 53.3
TPR.G492 Trifolium pratense HOM05D005075 ORTHO05D007097 4.0e-116 423.3 325 62.5
AagrBONN_evm.TU.Sc2ySwM_228.4178 Anthoceros agrestis HOM05D005075 ORTHO05D007097 1.2e-115 421.8 438 47.9
CiPaw.05G114800 Carya illinoinensis HOM05D005075 ORTHO05D007097 1.6e-109 401.4 275 69.8
HPP92_001244 Vanilla planifolia HOM05D005075 ORTHO05D007097 5.1e-103 379.8 386 51.8
Os01g0901700 Oryza sativa ssp. japonica HOM05D005075 ORTHO05D007097 2.1e-96 357.8 346 53.8
Actinidia08085 Actinidia chinensis HOM05D005075 ORTHO05D007097 5.3e-92 343.2 343 56.0
MCO06G130 Micromonas commoda HOM05D005075 ORTHO05D007097 3.8e-90 337.0 814 33.0
SEGI_28928 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 6.0e-88 329.7 362 47.8
PGSC0003DMG400021087 Solanum tuberosum HOM05D005075 ORTHO05D007097 6.7e-87 326.2 445 42.2
Haze_02705 Corylus avellana HOM05D005075 ORTHO05D007097 3.3e-86 323.9 233 68.2
Atru.chr11.2265 Acer truncatum HOM05D005075 ORTHO05D007097 4.2e-73 280.4 428 39.0
HPP92_001258 Vanilla planifolia HOM05D005075 ORTHO05D007097 7.9e-72 276.2 284 51.8
Cre14.g630895 Chlamydomonas reinhardtii HOM05D005075 ORTHO05D007097 2.4e-68 264.6 688 30.2
CBR_g21048 Chara braunii HOM05D000019 ORTHO05D000002 5.7e-62 243.4 445 33.7
PRCOL_00001291 Prasinoderma coloniale HOM05D005075 ORTHO05D007097 1.0e-55 222.6 688 27.9
Atru.chr12.1465 Acer truncatum HOM05D005075 ORTHO05D007097 2.0e-46 191.8 355 39.2
Atru.chr11.2253 Acer truncatum HOM05D005075 ORTHO05D007097 2.4e-44 184.9 284 38.7
CAN.G27.28 Capsicum annuum HOM05D005075 ORTHO05D007097 9.4e-41 172.9 114 74.6
MD16G1112300 Malus domestica HOM05D005075 ORTHO05D007097 3.7e-37 161.0 101 80.2
Actinidia30671 Actinidia chinensis HOM05D005075 ORTHO05D007097 7.0e-36 156.8 111 72.1
Atru.chr11.2251 Acer truncatum HOM05D005075 ORTHO05D007097 1.3e-29 136.0 90 64.4
MBI07_g43659_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 3.7e-29 134.4 200 40.0
MBI05_g16127_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 4.9e-29 134.0 278 33.5
MBI18_g19470_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 1.2e-27 129.4 286 32.2
MBI18_g03939_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 8.6e-26 123.2 327 30.9
AagrBONN_evm.TU.Sc2ySwM_228.4177 Anthoceros agrestis HOM05D005075 ORTHO05D007097 9.8e-22 109.8 74 68.9
Actinidia30670 Actinidia chinensis HOM05D005075 ORTHO05D007097 2.7e-19 101.7 188 36.7
HPP92_001243 Vanilla planifolia HOM05D005075 ORTHO05D007097 1.3e-18 99.4 88 50.0
COL.COLO4_15613 Corchorus olitorius HOM05D005075 ORTHO05D162910 1.7e-18 99.0 476 25.2
Cfa026038 Carpinus fangiana HOM05D005075 ORTHO05D007097 5.6e-17 94.0 112 41.1
MD16G1112100 Malus domestica HOM05D005075 ORTHO05D037935 5.6e-17 94.0 65 76.9
MBI13_g10206_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.2e-14 86.3 47 76.6
MBI16_g25874_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 3.4e-14 84.7 52 71.2
MD16G1112400 Malus domestica HOM05D005075 ORTHO05D007097 1.3e-13 82.8 210 34.3
MBI18_g33166_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.7e-13 82.4 54 64.8
Cfa026189 Carpinus fangiana HOM05D002287 ORTHO05D123242 2.2e-13 82.0 68 52.9
MBI18_g47010_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 2.9e-13 81.6 47 74.5
MBI18_g03943_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 5.4e-12 77.4 51 66.7
MBI18_g06981_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 5.4e-12 77.4 43 76.7
Cfa025560 Carpinus fangiana HOM05D005075 ORTHO05D122628 1.7e-10 72.4 113 37.2
Sabra10G0048500 Salix brachista HOM05D005075 ORTHO05D007097 8.1e-08 63.5 39 74.4
Pp3s34_300 Physcomitrium patens HOM05D000549 ORTHO05D006202 1.8e-07 62.4 238 27.7
Migut.A00294 Erythranthe guttata HOM05D004606 ORTHO05D005086 1.5e-06 59.3 321 24.9
Migut.A00298 Erythranthe guttata HOM05D004606 ORTHO05D005086 1.5e-06 59.3 321 24.9


User provided reference genes

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