Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G0004 Fragaria x ananassa HOM05D006461 ORTHO05D008199 1.4e-122 443.0 228 100.0
FAN17G2347 Fragaria x ananassa HOM05D006461 ORTHO05D008199 7.8e-121 437.2 228 99.1
FvH4_4g10840 Fragaria vesca HOM05D006461 ORTHO05D008199 1.1e-82 310.5 166 100.0
RcHm_v2.0_Chr4g0406641 Rosa chinensis HOM05D006461 ORTHO05D008199 1.0e-72 277.3 167 88.6
Prupe.1G398900 Prunus persica HOM05D006461 ORTHO05D008199 8.5e-51 204.5 168 69.6
MD15G1045100 Malus domestica HOM05D006461 ORTHO05D008199 1.7e-46 190.3 168 61.9
MD08G1049500 Malus domestica HOM05D006461 ORTHO05D008199 2.9e-43 179.5 168 61.3
Atru.chr2.1733 Acer truncatum HOM05D006461 ORTHO05D008199 2.0e-39 166.8 98 86.7
arahy.Tifrunner.gnm1.ann1.8SK5FU Arachis hypogaea HOM05D006461 ORTHO05D008199 2.6e-39 166.4 102 81.4
arahy.Tifrunner.gnm1.ann1.W7YZT9 Arachis hypogaea HOM05D006461 ORTHO05D008199 2.6e-39 166.4 102 81.4
Manes.08G158500 Manihot esculenta HOM05D006461 ORTHO05D008199 2.6e-39 166.4 101 86.1
Duzib106G1824 Durio zibethinus HOM05D006461 ORTHO05D008199 4.4e-39 165.6 124 71.0
Cfa016120 Carpinus fangiana HOM05D006461 ORTHO05D008199 7.5e-39 164.9 102 84.3
CiPaw.05G210400 Carya illinoinensis HOM05D006461 ORTHO05D008199 1.7e-38 163.7 178 58.4
TAR375G0815 Trochodendron aralioides HOM05D006461 ORTHO05D008199 2.2e-38 163.3 97 85.6
Thecc.05G228900 Theobroma cacao HOM05D006461 ORTHO05D008199 2.8e-38 162.9 120 71.7
Manes.09G131300 Manihot esculenta HOM05D006461 ORTHO05D008199 6.3e-38 161.8 136 67.6
PSO063G2738 Papaver somniferum HOM05D006461 ORTHO05D008199 1.1e-37 161.0 134 64.9
Psat6g101920 Pisum sativum HOM05D006461 ORTHO05D008199 2.4e-37 159.8 97 82.5
Ca_26296_v3 Cicer arietinum L. HOM05D006461 ORTHO05D008199 3.1e-37 159.5 179 55.3
Aqoxy3G01574 Aquilegia oxysepala HOM05D006461 ORTHO05D008199 4.1e-37 159.1 101 81.2
Ciclev10032825m.g Citrus clementina HOM05D006461 ORTHO05D008199 4.1e-37 159.1 98 83.7
Potri.013G074100 Populus trichocarpa HOM05D006461 ORTHO05D008199 5.4e-37 158.7 107 81.3
VMungo0720G0947 Vigna mungo HOM05D006461 ORTHO05D008199 5.4e-37 158.7 97 81.4
ClCG01G005420 Citrullus lanatus HOM05D006461 ORTHO05D008199 7.0e-37 158.3 101 79.2
QL09p005902 Quercus lobata HOM05D006461 ORTHO05D008199 7.0e-37 158.3 174 55.7
Gohir.D13G163800 Gossypium hirsutum HOM05D006461 ORTHO05D008199 9.1e-37 157.9 99 79.8
Gorai.013G199400 Gossypium raimondii HOM05D006461 ORTHO05D008199 9.1e-37 157.9 99 79.8
Lj6g0024347 Lotus japonicus HOM05D006461 ORTHO05D008199 1.2e-36 157.5 97 79.4
Sed0021956 Sechium edule HOM05D006461 ORTHO05D008199 1.6e-36 157.1 101 78.2
TPR.G30220 Trifolium pratense HOM05D006461 ORTHO05D008199 1.6e-36 157.1 110 74.5
CANSAT54G2891 Cannabis sativa HOM05D006461 ORTHO05D008199 2.0e-36 156.8 105 77.1
TWI32G0808 Tripterygium wilfordii HOM05D006461 ORTHO05D008199 2.0e-36 156.8 167 55.7
Glyma.02G000900 Glycine max HOM05D006461 ORTHO05D008199 2.7e-36 156.4 97 79.4
Gohir.A13G158700 Gossypium hirsutum HOM05D006461 ORTHO05D008199 2.7e-36 156.4 99 77.8
Nitab4.5_0000021g0870 Nicotiana tabacum HOM05D006461 ORTHO05D008199 2.7e-36 156.4 101 79.2
MELO3C005387.2 Cucumis melo HOM05D006461 ORTHO05D008199 4.5e-36 155.6 101 77.2
CsaV3_5G005660 Cucumis sativus L. HOM05D006461 ORTHO05D008199 4.5e-36 155.6 101 77.2
Medtr1g040145 Medicago truncatula HOM05D006461 ORTHO05D008199 5.9e-36 155.2 97 79.4
Nitab4.5_0005545g0020 Nicotiana tabacum HOM05D006461 ORTHO05D008199 7.7e-36 154.8 101 77.2
Peaxi162Scf00516g00428 Petunia axillaris HOM05D006461 ORTHO05D008199 7.7e-36 154.8 102 77.5
Phvul.007G281100 Phaseolus vulgaris HOM05D006461 ORTHO05D008199 7.7e-36 154.8 102 75.5
THA.LOC104802902 Tarenaya hassleriana HOM05D006461 ORTHO05D008199 1.0e-35 154.5 127 66.9
Nn3g19117 Nelumbo nucifera HOM05D006461 ORTHO05D008199 1.3e-35 154.1 97 79.4
CiPaw.06G037900 Carya illinoinensis HOM05D006461 ORTHO05D008199 2.3e-35 153.3 97 82.5
Rhsim03G0225700 Rhododendron simsii HOM05D006461 ORTHO05D008199 5.0e-35 152.1 100 81.0
Dinv19309 Davidia involucrata HOM05D006461 ORTHO05D008199 6.6e-35 151.8 105 76.2
PGR119G0757 Punica granatum HOM05D006461 ORTHO05D008199 6.6e-35 151.8 115 72.2
Ah.08g222190 Amaranthus hybridus HOM05D006461 ORTHO05D008199 1.5e-34 150.6 175 54.9
CAN.G732.29 Capsicum annuum HOM05D006461 ORTHO05D008199 1.5e-34 150.6 150 56.7
Lsat_1_v5_gn_9_48000 Lactuca sativa HOM05D006461 ORTHO05D008199 1.9e-34 150.2 100 80.0
Aa31LG11G12100 Aethionema arabicum HOM05D006461 ORTHO05D008199 3.3e-34 149.4 96 78.1
DCAR_020437 Daucus carota HOM05D006461 ORTHO05D008199 4.2e-34 149.1 108 75.0
Sopen03g028120 Solanum pennellii HOM05D006461 ORTHO05D008199 4.2e-34 149.1 101 74.3
Actinidia08786 Actinidia chinensis HOM05D006461 ORTHO05D008199 5.5e-34 148.7 90 82.2
Sp6g26660 Schrenkiella parvula HOM05D006461 ORTHO05D008199 5.5e-34 148.7 95 77.9
PGSC0003DMG400026478 Solanum tuberosum HOM05D006461 ORTHO05D008199 5.5e-34 148.7 101 75.2
BcaB01g04940 Brassica carinata HOM05D006461 ORTHO05D008199 7.2e-34 148.3 95 78.9
SEGI_06006 Sequoiadendron giganteum HOM05D006461 ORTHO05D008199 1.2e-33 147.5 98 74.5
Solyc03g097360.3 Solanum lycopersicum HOM05D006461 ORTHO05D008199 1.6e-33 147.1 101 73.3
AL6G28650 Arabidopsis lyrata HOM05D006461 ORTHO05D008199 2.1e-33 146.7 95 76.8
EL10Ac7g16271 Beta vulgaris HOM05D006461 ORTHO05D008199 2.8e-33 146.4 89 83.1
A10p21840 Brassica napus HOM05D006461 ORTHO05D008199 2.8e-33 146.4 95 76.8
C09p59590 Brassica napus HOM05D006461 ORTHO05D008199 2.8e-33 146.4 95 76.8
CARHR195620 Cardamine hirsuta HOM05D006461 ORTHO05D008199 2.8e-33 146.4 171 50.3
AUR62001576 Chenopodium quinoa HOM05D006461 ORTHO05D008199 2.8e-33 146.4 103 77.7
AUR62020207 Chenopodium quinoa HOM05D006461 ORTHO05D008199 2.8e-33 146.4 101 77.2
Thhalv10014786m.g Eutrema salsugineum HOM05D006461 ORTHO05D008199 2.8e-33 146.4 95 76.8
Hma1.2p1_0074F.1_g039100 Hydrangea macrophylla HOM05D006461 ORTHO05D008199 2.8e-33 146.4 101 76.2
Sc03g0004610 Simmondsia chinensis HOM05D006461 ORTHO05D008199 3.6e-33 146.0 128 64.1
BcaB08g36762 Brassica carinata HOM05D006461 ORTHO05D008199 4.7e-33 145.6 95 76.8
TWI60G1716 Tripterygium wilfordii HOM05D006461 ORTHO05D008199 4.7e-33 145.6 168 53.6
ECA232G1267 Erigeron canadensis HOM05D006461 ORTHO05D008199 6.1e-33 145.2 100 77.0
BcaB01g05208 Brassica carinata HOM05D006461 ORTHO05D008199 8.0e-33 144.8 95 76.8
A03p08420 Brassica napus HOM05D006461 ORTHO05D008199 8.0e-33 144.8 95 76.8
C03p09820 Brassica napus HOM05D006461 ORTHO05D008199 8.0e-33 144.8 95 76.8
BolC3t13470H Brassica oleracea HOM05D006461 ORTHO05D008199 8.0e-33 144.8 95 76.8
BraA03t10165Z Brassica rapa HOM05D006461 ORTHO05D008199 8.0e-33 144.8 95 76.8
Cc02_g00020 Coffea canephora HOM05D006461 ORTHO05D008199 8.0e-33 144.8 99 76.8
BcaC04g18779 Brassica carinata HOM05D006461 ORTHO05D008199 1.0e-32 144.4 95 75.8
BraA10t44244Z Brassica rapa HOM05D006461 ORTHO05D008199 1.0e-32 144.4 95 75.8
BolC9t58798H Brassica oleracea HOM05D006461 ORTHO05D008199 1.4e-32 144.1 95 75.8
Carub.0006s1580 Capsella rubella HOM05D006461 ORTHO05D008199 1.4e-32 144.1 95 76.8
CDE12G0687 Ceratophyllum demersum HOM05D006461 ORTHO05D008199 2.3e-32 143.3 101 73.3
unitig_62.g23822 Utricularia gibba HOM05D006461 ORTHO05D008199 4.0e-32 142.5 98 76.5
Sabra13G0064300 Salix brachista HOM05D006461 ORTHO05D008199 1.2e-31 141.0 102 77.5
Cc11_g04930 Coffea canephora HOM05D006461 ORTHO05D008199 1.5e-31 140.6 99 74.7
Haze_00341 Corylus avellana HOM05D006461 ORTHO05D000508 2.0e-31 140.2 149 57.0
Migut.F00927 Erythranthe guttata HOM05D006461 ORTHO05D008199 2.6e-31 139.8 99 74.7
HanXRQChr05g0140271 Helianthus annuus HOM05D006461 ORTHO05D008199 2.6e-31 139.8 82 86.6
Hund20961 Selenicereus undatus HOM05D006461 ORTHO05D008199 2.6e-31 139.8 90 77.8
SGA_v2.0_scaffold51G18860 Striga asiatica HOM05D006461 ORTHO05D008199 2.6e-31 139.8 98 75.5
Mapoly0098s0024 Marchantia polymorpha HOM05D006461 ORTHO05D008199 9.8e-31 137.9 97 73.2
SalBow2G0694 Salvia bowleyana HOM05D006461 ORTHO05D008199 1.3e-30 137.5 137 55.5
Os06g0484600 Oryza sativa ssp. japonica HOM05D006461 ORTHO05D008199 8.3e-30 134.8 97 72.2
GSVIVG01024255001 Vitis vinifera HOM05D006461 ORTHO05D008199 8.3e-30 134.8 77 89.6
MSTRG.8560 Avicennia marina HOM05D006461 ORTHO05D008199 3.2e-29 132.9 88 75.0
Zm00001eb278180 Zea mays HOM05D006461 ORTHO05D008199 5.9e-28 128.6 97 70.1
Lj7P538T25 Lonicera japonica HOM05D006461 ORTHO05D008199 7.8e-28 128.3 77 83.1
Hund18806 Selenicereus undatus HOM05D006461 ORTHO05D008199 1.9e-26 123.6 87 70.1
SMO358G0572 Selaginella moellendorffii HOM05D006461 ORTHO05D008199 3.3e-26 122.9 114 57.9
Actinidia24631 Actinidia chinensis HOM05D006461 ORTHO05D008199 1.2e-25 120.9 77 79.2
AagrBONN_evm.TU.Sc2ySwM_117.1385 Anthoceros agrestis HOM05D006461 ORTHO05D008199 1.2e-25 120.9 92 62.0
HPP92_003741 Vanilla planifolia HOM05D001207 ORTHO05D007056 4.7e-25 119.0 74 78.4
Pp3c1_12810 Physcomitrium patens HOM05D006461 ORTHO05D008199 6.1e-25 118.6 98 63.3
Sed0001670 Sechium edule HOM05D006461 ORTHO05D008199 2.2e-22 110.2 111 57.7
Cre09.g394701 Chlamydomonas reinhardtii HOM05D006461 ORTHO05D008199 1.4e-21 107.5 83 65.1
PRCOL_00004611 Prasinoderma coloniale HOM05D006461 ORTHO05D008199 2.7e-20 103.2 82 61.0
SMO358G0215 Selaginella moellendorffii HOM05D006461 ORTHO05D008199 8.1e-17 91.7 79 50.6
MCO16G354 Micromonas commoda HOM05D006461 ORTHO05D008199 1.8e-16 90.5 99 52.5
Eucgr.A02995 Eucalyptus grandis HOM05D006461 ORTHO05D008199 2.0e-15 87.0 48 87.5
Lalb_Chr19g0127781 Lupinus albus HOM05D006461 ORTHO05D008199 2.0e-15 87.0 53 81.1
CSS0025765 Camellia sinensis var. sinensis HOM05D006461 ORTHO05D008199 5.8e-15 85.5 179 36.3
CSS0040075 Camellia sinensis var. sinensis HOM05D006461 ORTHO05D008199 5.8e-15 85.5 179 36.3
SHI39095 Sapria himalayana HOM05D006461 ORTHO05D008199 3.7e-14 82.8 97 52.6
Cpa.g.sc2589.1 Carica papaya HOM05D006461 ORTHO05D008199 1.7e-11 73.9 49 75.5
AT5G17560 Arabidopsis thaliana HOM05D006461 ORTHO05D008199 1.2e-09 67.8 47 70.2
Actinidia28897 Actinidia chinensis HOM05D006461 ORTHO05D008199 1.6e-09 67.4 44 72.7
Ciclev10023008m.g Citrus clementina HOM05D002854 ORTHO05D003051 7.6e-07 58.5 66 45.5
Sed0026831 Sechium edule HOM05D002854 ORTHO05D003051 9.9e-07 58.2 102 37.3
AL3G12680 Arabidopsis lyrata HOM05D000403 ORTHO05D000350 1.3e-06 57.8 66 54.5
Sc16g0010190 Simmondsia chinensis HOM05D002854 ORTHO05D003051 1.7e-06 57.4 71 42.3
AL3G12640 Arabidopsis lyrata HOM05D006461 ORTHO05D008199 3.7e-06 56.2 73 50.7
ClCG09G021620 Citrullus lanatus HOM05D002854 ORTHO05D003051 6.4e-06 55.5 99 35.4
Thhalv10002241m.g Eutrema salsugineum HOM05D006461 ORTHO05D008199 6.4e-06 55.5 45 66.7
FAN16G0314 Fragaria x ananassa HOM05D000722 ORTHO05D003051 8.4e-06 55.1 96 34.4


User provided reference genes

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