Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G4033 Fragaria x ananassa HOM05D006259 ORTHO05D007804 2.2e-268 928.3 457 100.0
FvH4_3g19490 Fragaria vesca HOM05D006259 ORTHO05D007804 1.3e-215 753.1 379 98.7
FAN21G1610 Fragaria x ananassa HOM05D006259 ORTHO05D007804 3.2e-190 668.7 386 88.6
FAN25G1146 Fragaria x ananassa HOM05D006259 ORTHO05D007804 3.9e-188 661.8 358 93.3
RcHm_v2.0_Chr5g0032751 Rosa chinensis HOM05D006259 ORTHO05D007804 3.2e-182 642.1 382 86.9
FAN16G3026 Fragaria x ananassa HOM05D006259 ORTHO05D007804 1.8e-180 636.3 341 94.7
Prupe.4G176500 Prunus persica HOM05D006259 ORTHO05D007804 5.9e-152 541.6 387 73.6
MD11G1252500 Malus domestica HOM05D006259 ORTHO05D007804 8.0e-149 531.2 384 72.1
CiPaw.11G171900 Carya illinoinensis HOM05D006259 ORTHO05D007804 3.6e-125 452.6 370 63.8
QL08p022713 Quercus lobata HOM05D006259 ORTHO05D007804 2.3e-124 449.9 386 62.2
Cfa020561 Carpinus fangiana HOM05D006259 ORTHO05D007804 5.7e-123 445.3 374 62.6
CANSAT56G1257 Cannabis sativa HOM05D006259 ORTHO05D007804 1.7e-122 443.7 349 63.6
Dinv20198 Davidia involucrata HOM05D006259 ORTHO05D007804 1.7e-122 443.7 301 71.8
CSS0047365 Camellia sinensis var. sinensis HOM05D006259 ORTHO05D007804 3.3e-118 429.5 370 60.3
CSS0047678 Camellia sinensis var. sinensis HOM05D006259 ORTHO05D007804 5.6e-118 428.7 337 64.1
vmacro11886 Vaccinium macrocarpon HOM05D006259 ORTHO05D007804 7.3e-118 428.3 333 63.7
Haze_09453 Corylus avellana HOM05D006259 ORTHO05D007804 1.2e-117 427.6 368 61.4
Manes.15G089200 Manihot esculenta HOM05D006259 ORTHO05D007804 2.1e-117 426.8 382 60.5
Potri.011G116100 Populus trichocarpa HOM05D006259 ORTHO05D007804 3.6e-117 426.0 390 59.2
GSVIVG01014295001 Vitis vinifera HOM05D006259 ORTHO05D007804 1.4e-116 424.1 373 59.5
Ciclev10008595m.g Citrus clementina HOM05D006259 ORTHO05D007804 2.3e-116 423.3 352 63.4
Sabra11G0101700 Salix brachista HOM05D006259 ORTHO05D007804 3.1e-116 422.9 414 55.8
Duzib268G0576 Durio zibethinus HOM05D006259 ORTHO05D007804 4.0e-116 422.5 384 59.1
Aqoxy1G02333 Aquilegia oxysepala HOM05D006259 ORTHO05D007804 2.6e-115 419.9 377 58.9
Cpa.g.sc622.1 Carica papaya HOM05D006259 ORTHO05D007804 2.2e-114 416.8 317 65.9
Thecc.07G095600 Theobroma cacao HOM05D006259 ORTHO05D007804 9.2e-113 411.4 299 68.2
Lalb_Chr19g0134121 Lupinus albus HOM05D006259 ORTHO05D007804 1.6e-112 410.6 382 58.6
Gorai.009G375900 Gossypium raimondii HOM05D006259 ORTHO05D007804 1.3e-111 407.5 319 64.3
Sed0019446 Sechium edule HOM05D006259 ORTHO05D007804 1.7e-111 407.1 376 56.4
TAR629G2204 Trochodendron aralioides HOM05D006259 ORTHO05D007804 5.0e-111 405.6 297 68.4
TWI39G0898 Tripterygium wilfordii HOM05D006259 ORTHO05D007804 1.1e-110 404.4 324 62.7
Lj8A154G76 Lonicera japonica HOM05D006259 ORTHO05D007804 1.9e-110 403.7 331 64.0
Glyma.06G237700 Glycine max HOM05D006259 ORTHO05D007804 5.6e-110 402.1 327 60.6
Ciclev10010717m.g Citrus clementina HOM05D006259 ORTHO05D007804 7.3e-110 401.7 309 67.3
Duzib244G0007 Durio zibethinus HOM05D006259 ORTHO05D007804 1.2e-109 401.0 271 72.3
Nitab4.5_0002330g0080 Nicotiana tabacum HOM05D006259 ORTHO05D007804 1.2e-109 401.0 386 55.7
THA.LOC104811875 Tarenaya hassleriana HOM05D006259 ORTHO05D007804 1.2e-109 401.0 378 57.1
Sopen07g031120 Solanum pennellii HOM05D006259 ORTHO05D007804 1.6e-109 400.6 329 61.4
Solyc07g062930.3 Solanum lycopersicum HOM05D006259 ORTHO05D007804 2.8e-109 399.8 329 62.3
MSTRG.15241 Avicennia marina HOM05D006259 ORTHO05D007804 9.9e-107 391.3 380 54.5
arahy.Tifrunner.gnm1.ann1.J8ZMQ9 Arachis hypogaea HOM05D006259 ORTHO05D007804 1.7e-106 390.6 419 51.8
Cc05_g11780 Coffea canephora HOM05D006259 ORTHO05D007804 1.7e-106 390.6 349 57.6
Phvul.011G163100 Phaseolus vulgaris HOM05D006259 ORTHO05D007804 1.9e-105 387.1 328 60.1
ClCG11G017880 Citrullus lanatus HOM05D006259 ORTHO05D007804 5.4e-105 385.6 371 55.0
arahy.Tifrunner.gnm1.ann1.KCB6L6 Arachis hypogaea HOM05D006259 ORTHO05D007804 7.1e-105 385.2 412 51.7
DCAR_017124 Daucus carota HOM05D006259 ORTHO05D007804 7.1e-105 385.2 341 57.8
Nitab4.5_0005017g0010 Nicotiana tabacum HOM05D006259 ORTHO05D007804 7.1e-105 385.2 384 53.9
Peaxi162Scf00069g01731 Petunia axillaris HOM05D006259 ORTHO05D007804 7.1e-105 385.2 373 55.0
TPR.G32110 Trifolium pratense HOM05D006259 ORTHO05D007804 1.2e-104 384.4 326 60.7
Medtr8g058780 Medicago truncatula HOM05D006259 ORTHO05D007804 1.6e-104 384.0 308 62.3
Medtr8g061260 Medicago truncatula HOM05D006259 ORTHO05D007804 1.6e-104 384.0 308 62.3
Migut.M00783 Erythranthe guttata HOM05D006259 ORTHO05D007804 4.6e-104 382.5 382 53.9
Sc16g0007160 Simmondsia chinensis HOM05D006259 ORTHO05D007804 1.0e-103 381.3 378 52.6
CsaV3_4G033510 Cucumis sativus L. HOM05D006259 ORTHO05D007804 3.9e-103 379.4 337 58.2
MELO3C025605.2 Cucumis melo HOM05D006259 ORTHO05D007804 5.1e-103 379.0 384 54.2
Lj3g0016272 Lotus japonicus HOM05D006259 ORTHO05D007804 6.6e-103 378.6 395 54.9
Psat4g178120 Pisum sativum HOM05D006259 ORTHO05D007804 8.6e-103 378.3 389 51.2
VMungo1127G0077 Vigna mungo HOM05D006259 ORTHO05D007804 1.1e-102 377.9 392 52.8
HanXRQChr11g0351981 Helianthus annuus HOM05D006259 ORTHO05D007804 1.9e-102 377.1 346 56.6
Hund02234 Selenicereus undatus HOM05D006259 ORTHO05D007804 4.3e-102 375.9 382 53.9
Sp6g16000 Schrenkiella parvula HOM05D006259 ORTHO05D007804 7.3e-102 375.2 348 58.3
AUR62019461 Chenopodium quinoa HOM05D006259 ORTHO05D007804 2.1e-101 373.6 361 57.3
BcaB05g22091 Brassica carinata HOM05D006259 ORTHO05D007804 2.8e-101 373.2 383 55.1
Thhalv10015851m.g Eutrema salsugineum HOM05D006259 ORTHO05D007804 3.6e-101 372.9 359 55.2
CARHR267060 Cardamine hirsuta HOM05D006259 ORTHO05D007804 6.2e-101 372.1 383 53.8
SGA_v2.0_scaffold73G24236 Striga asiatica HOM05D006259 ORTHO05D007804 1.1e-100 371.3 371 53.1
EL10Ac4g08228 Beta vulgaris HOM05D006259 ORTHO05D007804 6.8e-100 368.6 339 57.2
Carub.0008s1423 Capsella rubella HOM05D006259 ORTHO05D007804 8.9e-100 368.2 383 53.0
Eucgr.F01160 Eucalyptus grandis HOM05D006259 ORTHO05D007804 4.4e-99 365.9 277 63.9
AL8G29030 Arabidopsis lyrata HOM05D006259 ORTHO05D007804 9.9e-99 364.8 361 55.7
ATR0150G016 Amborella trichopoda HOM05D006259 ORTHO05D007804 1.3e-98 364.4 371 52.0
Lsat_1_v5_gn_7_104661 Lactuca sativa HOM05D006259 ORTHO05D007804 1.3e-98 364.4 367 52.0
ECA236G1201 Erigeron canadensis HOM05D006259 ORTHO05D007804 2.2e-98 363.6 355 54.1
PGR083G2616 Punica granatum HOM05D006259 ORTHO05D007804 3.8e-98 362.8 322 59.6
Ah.04g164700 Amaranthus hybridus HOM05D006259 ORTHO05D007804 4.9e-98 362.5 397 51.6
AT5G53920 Arabidopsis thaliana HOM05D006259 ORTHO05D007804 2.4e-97 360.1 360 54.7
CAN.G162.38 Capsicum annuum HOM05D006259 ORTHO05D007804 5.4e-97 359.0 292 59.9
A02p10700 Brassica napus HOM05D006259 ORTHO05D007804 2.7e-96 356.7 386 52.8
Rhsim06G0201700 Rhododendron simsii HOM05D006259 ORTHO05D007804 4.6e-96 355.9 411 48.7
CDE05G3386 Ceratophyllum demersum HOM05D006259 ORTHO05D007804 3.0e-95 353.2 295 60.0
BcaC03g14368 Brassica carinata HOM05D006259 ORTHO05D007804 1.9e-94 350.5 387 51.4
HPP92_017550 Vanilla planifolia HOM05D006259 ORTHO05D007804 3.3e-94 349.7 378 51.3
BraA02t06133Z Brassica rapa HOM05D006259 ORTHO05D007804 4.7e-93 345.9 394 51.5
C02p17820 Brassica napus HOM05D006259 ORTHO05D007804 1.8e-92 344.0 400 50.2
Gohir.A04G035300 Gossypium hirsutum HOM05D006259 ORTHO05D007804 2.4e-92 343.6 319 56.7
BolC2t07911H Brassica oleracea HOM05D006259 ORTHO05D007804 3.1e-92 343.2 402 50.0
Atru.chr2.2422 Acer truncatum HOM05D006259 ORTHO05D007804 9.0e-92 341.7 231 71.4
PSO541G2103 Papaver somniferum HOM05D006259 ORTHO05D007804 9.0e-92 341.7 350 54.6
Aa31LG3G10030 Aethionema arabicum HOM05D006259 ORTHO05D007804 1.2e-91 341.3 346 52.3
PSO675G6900 Papaver somniferum HOM05D006259 ORTHO05D007804 6.4e-90 335.5 387 50.4
Os05g0497675 Oryza sativa ssp. japonica HOM05D006259 ORTHO05D007804 8.4e-90 335.1 382 45.8
Oeu025362.1 Olea europaea HOM05D006259 ORTHO05D007804 5.4e-89 332.4 387 49.1
Nn1g06450 Nelumbo nucifera HOM05D006259 ORTHO05D007804 1.2e-88 331.3 324 54.6
Gohir.D05G348100 Gossypium hirsutum HOM05D006259 ORTHO05D007804 6.0e-88 328.9 236 67.8
unitig_46.g18320 Utricularia gibba HOM05D006259 ORTHO05D007804 5.1e-79 299.3 379 46.7
arahy.Tifrunner.gnm1.ann1.IZH9YM Arachis hypogaea HOM05D006259 ORTHO05D007804 1.5e-78 297.7 220 65.9
arahy.Tifrunner.gnm1.ann1.JJTS0M Arachis hypogaea HOM05D006259 ORTHO05D007804 1.5e-78 297.7 226 65.5
Pp3c22_15620 Physcomitrium patens HOM05D006259 ORTHO05D007804 1.2e-75 288.1 358 42.5
Mapoly0161s0032 Marchantia polymorpha HOM05D006259 ORTHO05D007804 2.6e-75 287.0 341 45.5
AagrBONN_evm.TU.Sc2ySwM_362.1898 Anthoceros agrestis HOM05D006259 ORTHO05D007804 9.0e-68 261.9 366 39.9
Hma1.2p1_1411F.1_g281740 Hydrangea macrophylla HOM05D006259 ORTHO05D007804 3.2e-65 253.4 187 67.9
Actinidia09701 Actinidia chinensis HOM05D006259 ORTHO05D007804 2.6e-59 233.8 170 66.5
COL.COLO4_36712 Corchorus olitorius HOM05D006259 ORTHO05D007804 5.1e-55 219.5 256 50.0
AUR62036169 Chenopodium quinoa HOM05D006259 ORTHO05D007804 2.4e-52 210.7 221 55.2
Zm00001eb352610 Zea mays HOM05D006259 ORTHO05D007804 1.1e-49 201.8 179 53.6
SMO230G0105 Selaginella moellendorffii HOM05D006259 ORTHO05D007804 1.1e-46 191.8 191 49.7
arahy.Tifrunner.gnm1.ann1.NGC2LD Arachis hypogaea HOM05D006259 ORTHO05D007804 1.5e-46 191.4 269 40.9
MCO08G332 Micromonas commoda HOM05D006259 ORTHO05D007804 2.6e-46 190.7 306 36.9
arahy.Tifrunner.gnm1.ann1.N67PK3 Arachis hypogaea HOM05D006259 ORTHO05D007804 3.3e-46 190.3 295 38.6
arahy.Tifrunner.gnm1.ann1.88153A Arachis hypogaea HOM05D006259 ORTHO05D007804 4.1e-44 183.3 272 40.4
arahy.Tifrunner.gnm1.ann1.UFBT31 Arachis hypogaea HOM05D006259 ORTHO05D007804 9.1e-44 182.2 263 41.4
arahy.Tifrunner.gnm1.ann1.Y39XKR Arachis hypogaea HOM05D006259 ORTHO05D007804 2.0e-43 181.0 191 51.8
Thecc.02G165400 Theobroma cacao HOM05D006259 ORTHO05D007804 1.1e-41 175.3 183 54.1
arahy.Tifrunner.gnm1.ann1.SB88KA Arachis hypogaea HOM05D006259 ORTHO05D007804 4.2e-41 173.3 291 36.4
PRCOL_00006646 Prasinoderma coloniale HOM05D006259 ORTHO05D007804 2.1e-40 171.0 333 32.4
MBI18_g48079_MAGBIO Magnolia biondii HOM05D006259 ORTHO05D007804 2.7e-40 170.6 147 59.9
Cre09.g396735 Chlamydomonas reinhardtii HOM05D006259 ORTHO05D007804 6.7e-39 166.0 318 34.6
PRCOL_00002790 Prasinoderma coloniale HOM05D006259 ORTHO05D007804 2.4e-36 157.5 246 36.2
arahy.Tifrunner.gnm1.ann1.LRZU8J Arachis hypogaea HOM05D006259 ORTHO05D007804 9.1e-36 155.6 249 38.2
arahy.Tifrunner.gnm1.ann1.H7I8JY Arachis hypogaea HOM05D006259 ORTHO05D007804 2.0e-35 154.5 147 51.0
arahy.Tifrunner.gnm1.ann1.5V52A0 Arachis hypogaea HOM05D006259 ORTHO05D007804 1.5e-33 148.3 136 52.2
COL.COLO4_00923 Corchorus olitorius HOM05D006259 ORTHO05D007804 8.0e-32 142.5 269 32.7
HPP92_017577 Vanilla planifolia HOM05D006259 ORTHO05D007804 4.1e-28 130.2 192 39.6
Duzib213G0106 Durio zibethinus HOM05D006259 ORTHO05D007804 1.0e-23 115.5 129 48.1
PRCOL_00002336 Prasinoderma coloniale HOM05D006259 ORTHO05D007804 6.3e-21 106.3 224 31.2
Atru.chr2.2423 Acer truncatum HOM05D006259 ORTHO05D007804 1.8e-15 88.2 128 47.7
arahy.Tifrunner.gnm1.ann1.69KWVE Arachis hypogaea HOM05D007267 ORTHO05D009053 6.6e-10 69.7 54 61.1
arahy.Tifrunner.gnm1.ann1.BBFR3C Arachis hypogaea HOM05D003566 ORTHO05D009053 1.9e-09 68.2 52 63.5
arahy.Tifrunner.gnm1.ann1.I3MG1X Arachis hypogaea HOM05D001891 ORTHO05D005832 7.5e-06 56.2 44 61.4


User provided reference genes

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