Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G4007 Fragaria x ananassa HOM05D000034 ORTHO05D000277 3.6e-31 137.5 64 100.0
FvH4_1g22560 Fragaria vesca HOM05D000034 ORTHO05D000037 1.0e-25 119.4 63 87.3
FAN22G1985 Fragaria x ananassa HOM05D000034 ORTHO05D000277 2.9e-25 117.9 63 85.7
FvH4_7g00320 Fragaria vesca HOM05D000034 ORTHO05D000277 3.8e-25 117.5 63 85.7
FAN24G2067 Fragaria x ananassa HOM05D000034 ORTHO05D000277 8.6e-25 116.3 63 85.7
FAN21G2311 Fragaria x ananassa HOM05D000034 ORTHO05D000277 4.3e-24 114.0 63 82.5
FAN09G3387 Fragaria x ananassa HOM05D000034 ORTHO05D000277 6.1e-23 110.2 63 77.8
FAN25G0666 Fragaria x ananassa HOM05D000034 ORTHO05D000277 6.1e-23 110.2 63 77.8
FAN25G0710 Fragaria x ananassa HOM05D000034 ORTHO05D000277 6.1e-23 110.2 63 77.8
FAN28G1917 Fragaria x ananassa HOM05D000034 ORTHO05D000277 5.2e-22 107.1 63 74.6
FAN24G1441 Fragaria x ananassa HOM05D000034 ORTHO05D000277 5.7e-21 103.6 53 88.7
FAN12G3067 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.1e-19 99.4 51 86.3
FAN17G0198 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.8e-19 98.6 53 84.9
FAN17G1994 Fragaria x ananassa HOM05D000034 ORTHO05D000277 7.0e-19 96.7 49 87.8
FAN02G4058 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.2e-18 95.9 51 86.3
FAN21G1005 Fragaria x ananassa HOM05D000034 ORTHO05D000277 3.5e-18 94.4 70 70.0
FAN20G0414 Fragaria x ananassa HOM05D000034 ORTHO05D000277 2.3e-17 91.7 51 80.4
RcHm_v2.0_Chr1g0373591 Rosa chinensis HOM05D000034 ORTHO05D000277 5.0e-17 90.5 61 62.3
FvH4_2g04031 Fragaria vesca HOM05D000034 ORTHO05D000277 6.6e-17 90.1 61 63.9
FvH4_1g18411 Fragaria vesca HOM05D000034 ORTHO05D000277 1.1e-16 89.4 61 63.9
FAN02G0050 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.1e-16 89.4 49 79.6
FvH4_2g07610 Fragaria vesca HOM05D000034 ORTHO05D000277 1.5e-16 89.0 61 63.9
FvH4_3g30720 Fragaria vesca HOM05D000034 ORTHO05D000277 1.5e-16 89.0 61 63.9
FAN08G2368 Fragaria x ananassa HOM05D000034 ORTHO05D000277 3.3e-16 87.8 49 77.6
FAN09G0780 Fragaria x ananassa HOM05D000034 ORTHO05D000277 3.3e-16 87.8 63 71.4
FAN22G0450 Fragaria x ananassa HOM05D000034 ORTHO05D000277 3.3e-16 87.8 49 77.6
FAN09G0335 Fragaria x ananassa HOM05D000034 ORTHO05D000277 4.3e-16 87.4 57 64.9
FAN17G0070 Fragaria x ananassa HOM05D000034 ORTHO05D000277 7.3e-16 86.7 61 60.7
FAN25G0466 Fragaria x ananassa HOM05D000034 ORTHO05D000277 2.1e-15 85.1 61 59.0
FAN20G2099 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.8e-14 82.0 80 57.5
FAN08G2786 Fragaria x ananassa HOM05D000034 ORTHO05D000277 4.0e-14 80.9 53 64.2
FAN20G1514 Fragaria x ananassa HOM05D000034 ORTHO05D000277 6.8e-14 80.1 60 60.0
CANSAT11G0741 Cannabis sativa HOM05D000034 ORTHO05D000277 1.2e-13 79.3 58 60.3
CANSAT64G1464 Cannabis sativa HOM05D000034 ORTHO05D000277 1.2e-13 79.3 58 60.3
CANSAT25G0805 Cannabis sativa HOM05D000034 ORTHO05D000277 2.6e-13 78.2 58 58.6
Atru.chr6.1585 Acer truncatum HOM05D000034 ORTHO05D000277 1.7e-12 75.5 61 52.5
Atru.chr2.2599 Acer truncatum HOM05D000034 ORTHO05D000277 2.2e-12 75.1 61 55.7
CANSAT21G0305 Cannabis sativa HOM05D000034 ORTHO05D000277 3.7e-12 74.3 58 56.9
FAN02G4017 Fragaria x ananassa HOM05D000034 ORTHO05D000277 3.7e-12 74.3 46 67.4
FAN26G2259 Fragaria x ananassa HOM05D000034 ORTHO05D000277 4.9e-12 73.9 46 69.6
FAN04G3245 Fragaria x ananassa HOM05D000034 ORTHO05D000277 6.4e-12 73.6 67 52.2
FAN21G1797 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.1e-11 72.8 50 62.0
FAN21G0385 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.9e-11 72.0 60 55.0
FAN26G0732 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.9e-11 72.0 65 56.9
MD10G1011200 Malus domestica HOM05D000034 ORTHO05D000277 1.9e-11 72.0 63 52.4
FAN14G0405 Fragaria x ananassa HOM05D000034 ORTHO05D000277 3.2e-11 71.2 63 61.9
FAN28G1335 Fragaria x ananassa HOM05D000034 ORTHO05D000277 3.2e-11 71.2 54 64.8
FAN03G2701 Fragaria x ananassa HOM05D000034 ORTHO05D000277 5.4e-11 70.5 48 62.5
FAN26G3355 Fragaria x ananassa HOM05D000034 ORTHO05D000277 5.4e-11 70.5 47 63.8
FAN13G2412 Fragaria x ananassa HOM05D000034 ORTHO05D000277 7.0e-11 70.1 61 55.7
DCAR_011368 Daucus carota HOM05D001651 ORTHO05D000277 2.3e-09 65.1 67 47.8
DCAR_011369 Daucus carota HOM05D001651 ORTHO05D000277 2.3e-09 65.1 67 47.8
DCAR_009785 Daucus carota HOM05D001651 ORTHO05D000277 3.0e-09 64.7 50 56.0
DCAR_015799 Daucus carota HOM05D001651 ORTHO05D000277 3.0e-09 64.7 50 56.0
FAN20G2803 Fragaria x ananassa HOM05D000034 ORTHO05D000277 6.6e-09 63.5 47 59.6
MD15G1289200 Malus domestica HOM05D000034 ORTHO05D000277 1.5e-08 62.4 63 44.4
DCAR_018898 Daucus carota HOM05D001651 ORTHO05D000277 1.9e-08 62.0 52 53.8
RcHm_v2.0_Chr2g0106711 Rosa chinensis HOM05D000034 ORTHO05D025609 1.9e-08 62.0 61 47.5
Sed0003532 Sechium edule HOM05D001651 ORTHO05D000277 1.9e-08 62.0 54 51.9
Atru.chr4.1088 Acer truncatum HOM05D000034 ORTHO05D000037 3.3e-08 61.2 50 54.0
Atru.chr6.616 Acer truncatum HOM05D000034 ORTHO05D000037 3.3e-08 61.2 50 54.0
FAN08G3309 Fragaria x ananassa HOM05D000034 ORTHO05D000277 3.3e-08 61.2 46 54.3
Lsat_1_v5_gn_8_34000 Lactuca sativa HOM05D000034 ORTHO05D000277 4.3e-08 60.8 48 60.4
Rhsim03G0059900 Rhododendron simsii HOM05D000034 ORTHO05D000037 5.6e-08 60.5 61 44.3
SGA_v2.0_scaffold122G33229 Striga asiatica HOM05D000034 ORTHO05D000277 5.6e-08 60.5 54 50.0
SGA_v2.0_scaffold17G08100 Striga asiatica HOM05D000034 ORTHO05D000277 5.6e-08 60.5 54 50.0
SGA_v2.0_scaffold283G47003 Striga asiatica HOM05D000034 ORTHO05D000277 5.6e-08 60.5 54 50.0
SGA_v2.0_scaffold84G26487 Striga asiatica HOM05D000034 ORTHO05D000277 5.6e-08 60.5 54 50.0
FAN15G3165 Fragaria x ananassa HOM05D000034 ORTHO05D000277 7.3e-08 60.1 61 49.2
FAN28G0140 Fragaria x ananassa HOM05D002788 ORTHO05D025609 7.3e-08 60.1 61 45.9
Atru.chr12.1422 Acer truncatum HOM05D000034 ORTHO05D000037 9.5e-08 59.7 50 54.0
FAN28G0483 Fragaria x ananassa HOM05D002788 ORTHO05D025609 9.5e-08 59.7 61 45.9
Lsat_1_v5_gn_6_1241 Lactuca sativa HOM05D000034 ORTHO05D000277 1.2e-07 59.3 48 58.3
Hma1.2p1_0423F.1_g150230 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 1.6e-07 58.9 65 43.1
Hma1.2p1_0489F.1_g164000 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 1.6e-07 58.9 64 43.8
Lsat_1_v5_gn_1_36861 Lactuca sativa HOM05D000034 ORTHO05D000277 1.6e-07 58.9 51 54.9
Rhsim01G0279200 Rhododendron simsii HOM05D000034 ORTHO05D000037 1.6e-07 58.9 61 42.6
Rhsim05G0015700 Rhododendron simsii HOM05D000034 ORTHO05D000277 1.6e-07 58.9 61 42.6
Atru.chr3.682 Acer truncatum HOM05D000034 ORTHO05D000277 2.1e-07 58.5 47 59.6
FAN17G0186 Fragaria x ananassa HOM05D000664 ORTHO05D000491 2.1e-07 58.5 59 45.8
Hma1.2p1_0664F.1_g199003 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 2.1e-07 58.5 64 43.8
CSS0013775 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 2.8e-07 58.2 61 47.5
HanXRQChr03g0061341 Helianthus annuus HOM05D000034 ORTHO05D000277 2.8e-07 58.2 45 55.6
HanXRQChr09g0256181 Helianthus annuus HOM05D000034 ORTHO05D000277 2.8e-07 58.2 45 55.6
Prupe.4G257700 Prunus persica HOM05D000034 ORTHO05D000277 2.8e-07 58.2 64 46.9
Atru.chr1.1500 Acer truncatum HOM05D000034 ORTHO05D000037 3.6e-07 57.8 50 52.0
Actinidia17901 Actinidia chinensis HOM05D000034 ORTHO05D000277 3.6e-07 57.8 50 54.0
ECA232G0859 Erigeron canadensis HOM05D005071 ORTHO05D006069 3.6e-07 57.8 47 55.3
FvH4_4g15171 Fragaria vesca HOM05D000034 ORTHO05D000277 3.6e-07 57.8 63 52.4
Rhsim02G0110600 Rhododendron simsii HOM05D000034 ORTHO05D000277 3.6e-07 57.8 63 49.2
SGA_v2.0_scaffold177G39459 Striga asiatica HOM05D000034 ORTHO05D000277 3.6e-07 57.8 52 46.2
FAN12G0701 Fragaria x ananassa HOM05D000034 ORTHO05D000277 4.7e-07 57.4 63 52.4
Hma1.2p1_0354F.1_g133500 Hydrangea macrophylla HOM05D000034 ORTHO05D000277 4.7e-07 57.4 50 48.0
Lj1g0021510 Lotus japonicus HOM05D000034 ORTHO05D000277 4.7e-07 57.4 61 41.0
Lj5g0001459 Lotus japonicus HOM05D000034 ORTHO05D000277 4.7e-07 57.4 61 41.0
Lj5g0006139 Lotus japonicus HOM05D000034 ORTHO05D000277 4.7e-07 57.4 61 41.0
CSS0028844 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 6.2e-07 57.0 56 50.0
CSS0036649 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 6.2e-07 57.0 56 50.0
CSS0047009 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 6.2e-07 57.0 59 47.5
Gohir.A07G187500 Gossypium hirsutum HOM05D000034 ORTHO05D000277 6.2e-07 57.0 51 47.1
HanXRQChr10g0300111 Helianthus annuus HOM05D000034 ORTHO05D000277 6.2e-07 57.0 50 54.0
Hma1.2p1_1104F.1_g257520 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 6.2e-07 57.0 50 48.0
Hma1.2p1_2109F.1_g314220 Hydrangea macrophylla HOM05D000034 ORTHO05D000277 6.2e-07 57.0 52 44.2
Migut.L00416 Erythranthe guttata HOM05D000034 ORTHO05D000277 8.1e-07 56.6 54 48.1
FAN15G3570 Fragaria x ananassa HOM05D000034 ORTHO05D000277 8.1e-07 56.6 61 49.2
Hma1.2p1_0081F.1_g042220 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 8.1e-07 56.6 65 44.6
Hma1.2p1_0890F.1_g233020 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 8.1e-07 56.6 61 44.3
vmacro22639 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 8.1e-07 56.6 61 42.6
Actinidia09680 Actinidia chinensis HOM05D000034 ORTHO05D000277 1.1e-06 56.2 50 52.0
Actinidia03627 Actinidia chinensis HOM05D000034 ORTHO05D000277 1.4e-06 55.8 61 44.3
Actinidia06690 Actinidia chinensis HOM05D000034 ORTHO05D000277 1.4e-06 55.8 61 44.3
FAN19G1412 Fragaria x ananassa HOM05D002788 ORTHO05D025609 1.4e-06 55.8 61 45.9
HanXRQChr01g0013481 Helianthus annuus HOM05D000034 ORTHO05D000277 1.4e-06 55.8 50 48.0
HanXRQChr13g0408861 Helianthus annuus HOM05D000034 ORTHO05D000277 1.4e-06 55.8 50 52.0
Hma1.2p1_0170F.1_g074960 Hydrangea macrophylla HOM05D000034 ORTHO05D000277 1.4e-06 55.8 50 46.0
Hma1.2p1_0317F.1_g123700 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 1.4e-06 55.8 50 46.0
Hma1.2p1_1398F.1_g280820 Hydrangea macrophylla HOM05D000034 ORTHO05D000277 1.4e-06 55.8 50 46.0
Hma1.2p1_2091F.1_g313856 Hydrangea macrophylla HOM05D000034 ORTHO05D000277 1.4e-06 55.8 50 46.0
Lsat_1_v5_gn_8_10900 Lactuca sativa HOM05D000034 ORTHO05D000277 1.4e-06 55.8 42 61.9
Lj1g0019892 Lotus japonicus HOM05D000034 ORTHO05D000277 1.4e-06 55.8 53 45.3
Nn1g01000 Nelumbo nucifera HOM05D001651 ORTHO05D000277 1.4e-06 55.8 52 46.2
Dinv20295 Davidia involucrata HOM05D002072 ORTHO05D001634 1.8e-06 55.5 61 45.9
Gorai.002G108500 Gossypium raimondii HOM05D000034 ORTHO05D000277 1.8e-06 55.5 53 43.4
Hma1.2p1_0386F.1_g141750 Hydrangea macrophylla HOM05D000034 ORTHO05D000277 1.8e-06 55.5 52 46.2
Hma1.2p1_1277F.1_g272250 Hydrangea macrophylla HOM05D000034 ORTHO05D000277 1.8e-06 55.5 50 46.0
Lsat_1_v5_gn_7_30480 Lactuca sativa HOM05D000034 ORTHO05D000277 1.8e-06 55.5 52 50.0
Lsat_1_v5_gn_7_34221 Lactuca sativa HOM05D000034 ORTHO05D000277 1.8e-06 55.5 52 48.1
Lsat_1_v5_gn_8_5240 Lactuca sativa HOM05D000034 ORTHO05D000277 1.8e-06 55.5 52 48.1
LjContig00357g0019659 Lotus japonicus HOM05D000034 ORTHO05D000277 1.8e-06 55.5 61 39.3
vmacro14063 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 1.8e-06 55.5 60 40.0
Atru.chr12.953 Acer truncatum HOM05D001651 ORTHO05D000277 2.3e-06 55.1 52 48.1
Atru.chr2.3198 Acer truncatum HOM05D001651 ORTHO05D000277 2.3e-06 55.1 52 48.1
Actinidia15598 Actinidia chinensis HOM05D000034 ORTHO05D000277 2.3e-06 55.1 50 50.0
MELO3C031381.2 Cucumis melo HOM05D001651 ORTHO05D000277 2.3e-06 55.1 48 52.1
Hma1.2p1_0035F.1_g021910 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 2.3e-06 55.1 63 39.7
Hma1.2p1_0127F.1_g059736 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 2.3e-06 55.1 63 39.7
Hma1.2p1_0286F.1_g113985 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 2.3e-06 55.1 63 39.7
Hma1.2p1_0529F.1_g173280 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 2.3e-06 55.1 45 48.9
Hma1.2p1_1761F.1_g301340 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 2.3e-06 55.1 57 42.1
MELO3C028455.2 Cucumis melo HOM05D001651 ORTHO05D000277 3.1e-06 54.7 55 47.3
FAN26G1288 Fragaria x ananassa HOM05D000034 ORTHO05D000277 3.1e-06 54.7 52 53.8
Sed0005563 Sechium edule HOM05D001651 ORTHO05D000277 3.1e-06 54.7 53 49.1
vmacro04835 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 3.1e-06 54.7 60 40.0
Dinv36440 Davidia involucrata HOM05D012673 ORTHO05D000277 4.0e-06 54.3 59 49.2
Hma1.2p1_2091F.1_g313860 Hydrangea macrophylla HOM05D000034 ORTHO05D000277 4.0e-06 54.3 50 46.0
RcHm_v2.0_Chr6g0284621 Rosa chinensis HOM05D000034 ORTHO05D000277 4.0e-06 54.3 63 50.8
CSS0021233 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 5.2e-06 53.9 56 44.6
AUR62035709 Chenopodium quinoa HOM05D001651 ORTHO05D000277 5.2e-06 53.9 47 53.2
ClCG05G014710 Citrullus lanatus HOM05D001651 ORTHO05D000277 5.2e-06 53.9 55 47.3
COL.COLO4_07669 Corchorus olitorius HOM05D000034 ORTHO05D000277 5.2e-06 53.9 51 49.0
FAN03G2645 Fragaria x ananassa HOM05D000034 ORTHO05D000277 5.2e-06 53.9 63 50.8
Hma1.2p1_0189F.1_g082820 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 5.2e-06 53.9 57 40.4
Hma1.2p1_0896F.1_g233910 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 5.2e-06 53.9 57 40.4
Lsat_1_v5_gn_6_55620 Lactuca sativa HOM05D000034 ORTHO05D000277 5.2e-06 53.9 46 54.3
RcHm_v2.0_Chr1g0343671 Rosa chinensis HOM05D000034 ORTHO05D000277 5.2e-06 53.9 61 52.5
RcHm_v2.0_Chr6g0274461 Rosa chinensis HOM05D000034 ORTHO05D000277 5.2e-06 53.9 63 50.8
Actinidia26110 Actinidia chinensis HOM05D000034 ORTHO05D000277 6.8e-06 53.5 55 43.6
CSS0010302 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 6.8e-06 53.5 59 45.8
CSS0015669 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 6.8e-06 53.5 59 45.8
CSS0024362 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 6.8e-06 53.5 59 45.8
MELO3C032795.2 Cucumis melo HOM05D001651 ORTHO05D000277 6.8e-06 53.5 54 48.1
Migut.O00810 Erythranthe guttata HOM05D000034 ORTHO05D000277 6.8e-06 53.5 59 45.8
FAN26G0104 Fragaria x ananassa HOM05D000034 ORTHO05D000277 6.8e-06 53.5 52 51.9
Hma1.2p1_0354F.1_g133450 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 6.8e-06 53.5 63 38.1
RcHm_v2.0_Chr5g0072391 Rosa chinensis HOM05D000034 ORTHO05D000277 6.8e-06 53.5 61 50.8
MELO3C002765.2 Cucumis melo HOM05D001651 ORTHO05D000277 8.9e-06 53.1 51 49.0
ECA233G3306 Erigeron canadensis HOM05D000034 ORTHO05D000277 8.9e-06 53.1 49 44.9
Gorai.004G043300 Gossypium raimondii HOM05D000034 ORTHO05D000277 8.9e-06 53.1 49 44.9
Hma1.2p1_0026F.1_g016610 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 8.9e-06 53.1 57 38.6
Hma1.2p1_0276F.1_g111440 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 8.9e-06 53.1 50 46.0
Lsat_1_v5_gn_4_94201 Lactuca sativa HOM05D000034 ORTHO05D000277 8.9e-06 53.1 52 48.1
Nn1g08792 Nelumbo nucifera HOM05D000034 ORTHO05D000277 8.9e-06 53.1 39 56.4
vmacro02162 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 8.9e-06 53.1 60 38.3
vmacro19656 Vaccinium macrocarpon HOM05D009692 ORTHO05D011920 8.9e-06 53.1 60 38.3


User provided reference genes

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