Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G3993 Fragaria x ananassa HOM05D004538 ORTHO05D006068 1.1e-259 899.4 450 100.0
FAN21G0976 Fragaria x ananassa HOM05D004538 ORTHO05D006068 2.8e-255 884.8 450 97.8
FvH4_3g41910 Fragaria vesca HOM05D004538 ORTHO05D006068 4.8e-255 884.0 450 98.0
FAN25G0511 Fragaria x ananassa HOM05D004538 ORTHO05D006068 3.8e-252 874.4 450 96.9
RcHm_v2.0_Chr5g0075121 Rosa chinensis HOM05D004538 ORTHO05D006068 9.3e-243 843.2 450 92.9
Prupe.4G230100 Prunus persica HOM05D004538 ORTHO05D006068 4.4e-224 781.2 450 86.2
Prupe.8G086500 Prunus persica HOM05D004538 ORTHO05D006068 7.4e-224 780.4 450 86.0
RcHm_v2.0_Chr6g0267391 Rosa chinensis HOM05D004538 ORTHO05D006068 8.5e-212 740.3 451 82.7
CANSAT11G1513 Cannabis sativa HOM05D004538 ORTHO05D006068 2.3e-201 705.7 454 78.2
Haze_03267 Corylus avellana HOM05D004538 ORTHO05D006068 6.8e-201 704.1 428 80.8
MD02G1271400 Malus domestica HOM05D004538 ORTHO05D006068 1.3e-199 699.9 400 85.0
Thecc.07G004000 Theobroma cacao HOM05D004538 ORTHO05D006068 1.6e-197 693.0 455 77.1
Ciclev10008262m.g Citrus clementina HOM05D004538 ORTHO05D006068 2.9e-196 688.7 451 76.5
GSVIVG01014777001 Vitis vinifera HOM05D004538 ORTHO05D006068 5.0e-196 688.0 449 76.8
Duzib268G1486 Durio zibethinus HOM05D004538 ORTHO05D006068 1.6e-194 682.9 451 76.5
CiPaw.15G107100 Carya illinoinensis HOM05D004538 ORTHO05D006068 3.6e-194 681.8 447 76.7
PGR083G1782 Punica granatum HOM05D004538 ORTHO05D006068 3.6e-194 681.8 453 74.8
Sed0002758 Sechium edule HOM05D004538 ORTHO05D006068 4.7e-194 681.4 454 75.8
QL09p046970 Quercus lobata HOM05D004538 ORTHO05D006068 1.4e-193 679.9 428 79.9
Eucgr.F02006 Eucalyptus grandis HOM05D004538 ORTHO05D006068 3.0e-193 678.7 452 75.4
Hund25422 Selenicereus undatus HOM05D004538 ORTHO05D006068 3.0e-193 678.7 456 75.4
Lj5g0024294 Lotus japonicus HOM05D004538 ORTHO05D006068 4.0e-193 678.3 450 76.0
ClCG07G010160 Citrullus lanatus HOM05D004538 ORTHO05D006068 1.2e-192 676.8 442 77.4
LjContig00081g0007081 Lotus japonicus HOM05D004538 ORTHO05D006068 1.5e-192 676.4 450 75.6
TWI39G0910 Tripterygium wilfordii HOM05D004538 ORTHO05D006068 9.8e-192 673.7 454 75.6
Gohir.D13G132900 Gossypium hirsutum HOM05D004538 ORTHO05D006068 4.9e-191 671.4 445 75.1
Gohir.A13G129700 Gossypium hirsutum HOM05D004538 ORTHO05D006068 6.3e-191 671.0 445 75.1
CSS0012792 Camellia sinensis var. sinensis HOM05D004538 ORTHO05D006068 8.3e-191 670.6 431 77.7
CsaV3_4G008160 Cucumis sativus L. HOM05D004538 ORTHO05D006068 8.3e-191 670.6 432 77.5
Gorai.013G149100 Gossypium raimondii HOM05D004538 ORTHO05D006068 8.3e-191 670.6 451 74.3
Sabra11G0139500 Salix brachista HOM05D004538 ORTHO05D006068 1.4e-190 669.8 460 73.5
THA.LOC104811692 Tarenaya hassleriana HOM05D004538 ORTHO05D006068 1.4e-190 669.8 451 74.9
Hma1.2p1_0321F.1_g124200 Hydrangea macrophylla HOM05D004538 ORTHO05D006068 9.2e-190 667.2 461 73.1
Potri.011G166800 Populus trichocarpa HOM05D004538 ORTHO05D006068 1.6e-189 666.4 460 73.3
Lj8A182T63 Lonicera japonica HOM05D004538 ORTHO05D006068 2.0e-189 666.0 394 81.7
Sp6g17940 Schrenkiella parvula HOM05D004538 ORTHO05D006068 5.9e-189 664.5 457 72.0
MELO3C016120.2 Cucumis melo HOM05D004538 ORTHO05D006068 1.0e-188 663.7 443 75.8
Lsat_1_v5_gn_7_116401 Lactuca sativa HOM05D004538 ORTHO05D006068 1.7e-188 662.9 418 77.5
PSO675G3744 Papaver somniferum HOM05D004538 ORTHO05D006068 5.0e-188 661.4 454 72.9
AUR62001067 Chenopodium quinoa HOM05D004538 ORTHO05D006068 6.6e-188 661.0 453 73.7
Actinidia00835 Actinidia chinensis HOM05D004538 ORTHO05D006068 1.1e-187 660.2 385 83.1
Ah.12g065010 Amaranthus hybridus HOM05D004538 ORTHO05D006068 1.1e-187 660.2 428 78.0
PSO541G6331 Papaver somniferum HOM05D004538 ORTHO05D006068 1.1e-187 660.2 454 72.7
VMungo0647G1241 Vigna mungo HOM05D004538 ORTHO05D006068 3.3e-187 658.7 456 73.0
EL10Ac2g02751 Beta vulgaris HOM05D004538 ORTHO05D006068 9.5e-187 657.1 457 72.6
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 1.2e-186 656.8 409 78.7
Psat2g005560 Pisum sativum HOM05D004538 ORTHO05D006068 3.6e-186 655.2 459 71.0
BcaB08g35975 Brassica carinata HOM05D004538 ORTHO05D006068 1.0e-185 653.7 457 71.3
CARHR269470 Cardamine hirsuta HOM05D004538 ORTHO05D006068 1.0e-185 653.7 455 71.6
Dinv31347 Davidia involucrata HOM05D004538 ORTHO05D006068 1.0e-185 653.7 392 80.9
Aqoxy7G01640 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 1.4e-185 653.3 404 77.5
AT5G56090 Arabidopsis thaliana HOM05D004538 ORTHO05D006068 1.8e-185 652.9 457 71.3
Phvul.008G282700 Phaseolus vulgaris HOM05D004538 ORTHO05D006068 1.8e-185 652.9 456 72.6
Hund19415 Selenicereus undatus HOM05D004538 ORTHO05D006068 3.0e-185 652.1 456 73.7
HanXRQChr04g0114571 Helianthus annuus HOM05D004538 ORTHO05D006068 1.2e-184 650.2 458 70.5
Nn1g08442 Nelumbo nucifera HOM05D004538 ORTHO05D006068 1.2e-184 650.2 450 72.4
Sopen11g002920 Solanum pennellii HOM05D004538 ORTHO05D006068 1.2e-184 650.2 414 77.1
BraA10t43427Z Brassica rapa HOM05D004538 ORTHO05D006068 1.5e-184 649.8 454 71.1
Carub.0008s1641 Capsella rubella HOM05D004538 ORTHO05D006068 1.5e-184 649.8 457 70.7
PSO063G5767 Papaver somniferum HOM05D004538 ORTHO05D006068 1.5e-184 649.8 456 71.7
BolC9t57574H Brassica oleracea HOM05D004538 ORTHO05D006068 2.0e-184 649.4 458 70.5
Nitab4.5_0005622g0040 Nicotiana tabacum HOM05D004538 ORTHO05D006068 2.0e-184 649.4 393 79.4
BcaC04g20158 Brassica carinata HOM05D004538 ORTHO05D006068 2.6e-184 649.0 458 70.5
CAN.G645.5 Capsicum annuum HOM05D004538 ORTHO05D006068 3.4e-184 648.7 415 76.9
A10p13290 Brassica napus HOM05D002718 ORTHO05D003269 4.4e-184 648.3 454 71.1
Cc02_g29800 Coffea canephora HOM05D004538 ORTHO05D006068 4.4e-184 648.3 395 80.0
Lalb_Chr04g0247681 Lupinus albus HOM05D004538 ORTHO05D006068 4.4e-184 648.3 454 72.2
Sc07g0002240 Simmondsia chinensis HOM05D004538 ORTHO05D006068 4.4e-184 648.3 411 79.1
Aa31LG3G12000 Aethionema arabicum HOM05D004538 ORTHO05D006068 7.5e-184 647.5 441 72.6
Glyma.14G010400 Glycine max HOM05D004538 ORTHO05D006068 7.5e-184 647.5 438 74.9
Peaxi162Scf00173g00324 Petunia axillaris HOM05D004538 ORTHO05D006068 7.5e-184 647.5 399 79.9
Solyc11g007000.2 Solanum lycopersicum HOM05D004538 ORTHO05D006068 7.5e-184 647.5 438 74.9
Cc02_g09720 Coffea canephora HOM05D004538 ORTHO05D006068 1.3e-183 646.7 387 80.6
COL.COLO4_07768 Corchorus olitorius HOM05D004538 ORTHO05D006068 1.3e-183 646.7 383 83.0
TPR.G1264 Trifolium pratense HOM05D004538 ORTHO05D006068 1.3e-183 646.7 456 71.9
C09p47190 Brassica napus HOM05D002718 ORTHO05D003269 1.7e-183 646.4 409 76.0
HanXRQChr11g0334561 Helianthus annuus HOM05D004538 ORTHO05D006068 2.2e-183 646.0 460 71.1
Migut.F00884 Erythranthe guttata HOM05D004538 ORTHO05D006068 2.9e-183 645.6 393 79.6
Thhalv10013497m.g Eutrema salsugineum HOM05D004538 ORTHO05D006068 2.9e-183 645.6 451 71.0
Lj1C898T12 Lonicera japonica HOM05D004538 ORTHO05D006068 3.7e-183 645.2 382 81.4
AL8G31670 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 4.9e-183 644.8 457 70.5
Medtr5g096830 Medicago truncatula HOM05D004538 ORTHO05D006068 4.9e-183 644.8 458 71.6
SGA_v2.0_scaffold62G21339 Striga asiatica HOM05D004538 ORTHO05D006068 8.3e-183 644.0 393 78.6
PGSC0003DMG400023975 Solanum tuberosum HOM05D004538 ORTHO05D006068 1.1e-182 643.7 396 79.3
arahy.Tifrunner.gnm1.ann1.01YFCZ Arachis hypogaea HOM05D004538 ORTHO05D006068 1.4e-182 643.3 399 78.7
arahy.Tifrunner.gnm1.ann1.0Z7D2W Arachis hypogaea HOM05D004538 ORTHO05D006068 1.4e-182 643.3 403 78.4
AL2G22990 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 2.4e-182 642.5 451 70.7
unitig_899.g14715 Utricularia gibba HOM05D004538 ORTHO05D006068 3.2e-182 642.1 390 79.0
Cpa.g.sc97.88 Carica papaya HOM05D004538 ORTHO05D006068 4.1e-182 641.7 387 81.1
Ca_06424_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 2.7e-181 639.0 387 80.1
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 4.6e-181 638.3 451 70.3
BcaC04g20151 Brassica carinata HOM05D004538 ORTHO05D006068 1.3e-180 636.7 455 69.7
SalBow6G4226 Salvia bowleyana HOM05D004538 ORTHO05D006068 3.9e-180 635.2 389 80.2
C09p47240 Brassica napus HOM05D004538 ORTHO05D006068 5.0e-180 634.8 385 78.4
DCAR_013768 Daucus carota HOM05D004538 ORTHO05D006068 6.6e-180 634.4 406 75.9
ECA236G0032 Erigeron canadensis HOM05D004538 ORTHO05D006068 6.6e-180 634.4 387 79.3
BcaC04g20148 Brassica carinata HOM05D004538 ORTHO05D006068 1.1e-179 633.6 381 79.0
Glyma.02G303400 Glycine max HOM05D004538 ORTHO05D006068 1.9e-179 632.9 386 79.5
Oeu036424.1 Olea europaea HOM05D004538 ORTHO05D006068 1.9e-179 632.9 385 80.5
Medtr3g095790 Medicago truncatula HOM05D004538 ORTHO05D006068 2.5e-179 632.5 449 70.6
MBI14_g30901_MAGBIO Magnolia biondii HOM05D004538 ORTHO05D006068 2.2e-175 619.4 404 76.0
ATR0751G112 Amborella trichopoda HOM05D004538 ORTHO05D006068 8.3e-175 617.5 403 73.9
vmacro09607 Vaccinium macrocarpon HOM05D004538 ORTHO05D006068 1.4e-174 616.7 450 68.4
Os08g0496000 Oryza sativa ssp. japonica HOM05D004538 ORTHO05D006068 2.6e-168 595.9 370 76.5
HPP92_015457 Vanilla planifolia HOM05D004538 ORTHO05D006068 1.6e-165 586.6 411 69.8
AUR62032611 Chenopodium quinoa HOM05D004538 ORTHO05D006068 4.0e-161 572.0 453 66.9
CDE06G0653 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 6.4e-159 564.7 357 75.6
AUR62031724 Chenopodium quinoa HOM05D004538 ORTHO05D006068 4.4e-152 542.0 454 64.5
Zm00001eb033900 Zea mays HOM05D004538 ORTHO05D006068 1.7e-148 530.0 405 65.7
Mapoly0020s0071 Marchantia polymorpha HOM05D004538 ORTHO05D006068 8.7e-148 527.7 395 65.8
BolC9t57580H Brassica oleracea HOM05D004538 ORTHO05D006068 5.6e-147 525.0 460 60.2
Manes.01G005033 Manihot esculenta HOM05D004538 ORTHO05D006068 2.6e-144 516.2 455 61.1
Pp3c7_5710 Physcomitrium patens HOM05D004538 ORTHO05D006068 8.4e-143 511.1 407 63.6
Nitab4.5_0001437g0060 Nicotiana tabacum HOM05D004538 ORTHO05D006068 3.9e-140 502.3 295 79.7
FvH4_2g10180 Fragaria vesca HOM05D004538 ORTHO05D006068 2.5e-139 499.6 312 78.8
AagrBONN_evm.TU.Sc2ySwM_368.2501 Anthoceros agrestis HOM05D004538 ORTHO05D006068 9.6e-139 497.7 345 69.3
Cc02_g29840 Coffea canephora HOM05D004538 ORTHO05D006068 1.3e-138 497.3 346 74.3
CDE02G3208 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 7.6e-136 488.0 373 63.3
SMO353G0004 Selaginella moellendorffii HOM05D004538 ORTHO05D006068 1.3e-132 477.2 359 66.6
CBR_g24146 Chara braunii HOM05D004538 ORTHO05D006068 8.7e-132 474.6 366 62.8
MD07G1040600 Malus domestica HOM05D004538 ORTHO05D006068 4.3e-131 472.2 326 73.9
FAN24G0261 Fragaria x ananassa HOM05D004538 ORTHO05D006068 7.4e-131 471.5 363 67.2
Atru.chr2.2684 Acer truncatum HOM05D004538 ORTHO05D006068 1.0e-124 451.1 276 78.6
AL8G31690 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.0e-124 451.1 294 74.1
CDE03G0061 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 2.3e-124 449.9 289 74.4
SalBow6G3380 Salvia bowleyana HOM05D004538 ORTHO05D006068 1.1e-113 414.5 396 56.6
Potri.001G469701 Populus trichocarpa HOM05D004538 ORTHO05D006068 1.0e-111 407.9 289 70.2
Aa31LG3G11950 Aethionema arabicum HOM05D004538 ORTHO05D006068 2.6e-107 393.3 258 74.0
Duzib213G1090 Durio zibethinus HOM05D004538 ORTHO05D006068 7.7e-104 381.7 316 66.5
Cre02.g082700 Chlamydomonas reinhardtii HOM05D004538 ORTHO05D006068 5.2e-100 369.0 356 53.4
Nitab4.5_0004391g0070 Nicotiana tabacum HOM05D004538 ORTHO05D006068 2.6e-96 356.7 284 66.9
PRCOL_00000259 Prasinoderma coloniale HOM05D004538 ORTHO05D006068 3.8e-95 352.8 329 54.4
Atru.chr2.2623 Acer truncatum HOM05D004538 ORTHO05D006068 6.1e-93 345.5 212 80.2
SEGI_29632 Sequoiadendron giganteum HOM05D004538 ORTHO05D006068 1.1e-86 324.7 201 75.6
A10p13310 Brassica napus HOM05D004538 ORTHO05D006068 2.5e-86 323.6 230 70.4
Cc02_g29790 Coffea canephora HOM05D004538 ORTHO05D006068 3.8e-79 299.7 226 68.1
Aqoxy289s001 Aquilegia oxysepala HOM05D004538 ORTHO05D008153 1.5e-75 287.7 202 70.8
Aqoxy2G00269 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 3.5e-72 276.6 178 75.8
SHI46402 Sapria himalayana HOM05D004538 ORTHO05D006068 5.8e-67 259.2 179 70.4
SHI05855 Sapria himalayana HOM05D004538 ORTHO05D006068 9.2e-65 251.9 179 69.8
MSTRG.9067 Avicennia marina HOM05D004538 ORTHO05D006068 2.3e-60 237.3 124 87.9
Haze_27104 Corylus avellana HOM05D004538 ORTHO05D163757 7.5e-59 232.3 367 39.5
Atru.chr2.2696 Acer truncatum HOM05D004538 ORTHO05D006068 1.7e-55 221.1 137 80.3
Haze_26959 Corylus avellana HOM05D004538 ORTHO05D165751 3.0e-55 220.3 292 43.5
SHI05856 Sapria himalayana HOM05D004538 ORTHO05D006068 6.6e-47 192.6 134 71.6
MSTRG.9065 Avicennia marina HOM05D004538 ORTHO05D006068 4.0e-36 156.8 101 72.3
QL03p014007 Quercus lobata HOM05D001565 ORTHO05D005515 4.4e-35 153.3 124 64.5
Duzib268G1762 Durio zibethinus HOM05D004538 ORTHO05D006068 5.8e-35 152.9 112 71.4
Aqoxy2G00270 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 7.6e-35 152.5 85 83.5
Atru.chr2.2627 Acer truncatum HOM05D000397 ORTHO05D002023 8.4e-34 149.1 113 70.8
MSTRG.9077 Avicennia marina HOM05D004538 ORTHO05D006068 1.9e-25 121.3 77 79.2
QL10p039376 Quercus lobata HOM05D004538 ORTHO05D006068 2.7e-24 117.5 86 67.4
ATR0499G006 Amborella trichopoda HOM05D004538 ORTHO05D066479 1.9e-22 111.3 117 57.3
Atru.chr2.2679 Acer truncatum HOM05D004538 ORTHO05D052265 1.3e-21 108.6 231 34.2
MD02G1271500 Malus domestica HOM05D004538 ORTHO05D006068 2.2e-18 97.8 62 83.9
RcHm_v2.0_Chr6g0267421 Rosa chinensis HOM05D004538 ORTHO05D006068 4.9e-18 96.7 62 83.9
QL02p081848 Quercus lobata HOM05D007814 ORTHO05D009902 5.1e-15 86.7 50 78.0
ATR0499G019 Amborella trichopoda HOM05D004538 ORTHO05D006068 3.1e-12 77.4 58 55.2
Cc02_g29820 Coffea canephora HOM05D004538 ORTHO05D006068 5.3e-12 76.6 68 57.4
Atru.chr2.2641 Acer truncatum HOM05D004538 ORTHO05D052874 1.1e-09 68.9 44 70.5
Oeu026585.1 Olea europaea HOM05D004538 ORTHO05D289065 1.3e-07 62.0 220 25.0


User provided reference genes

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