Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G3829 Fragaria x ananassa HOM05D010052 ORTHO05D010666 1.1e-130 469.9 233 100.0
FvH4_3g40821 Fragaria vesca HOM05D010052 ORTHO05D010666 4.7e-129 464.5 230 99.6
RcHm_v2.0_Chr5g0073621 Rosa chinensis HOM05D010052 ORTHO05D010666 3.4e-79 298.9 231 66.2
RcHm_v2.0_Chr7g0211331 Rosa chinensis HOM05D010052 ORTHO05D010666 2.1e-73 279.6 231 62.3
FAN04G3011 Fragaria x ananassa HOM05D010052 ORTHO05D010666 1.5e-71 273.5 231 62.3
FAN18G3409 Fragaria x ananassa HOM05D010052 ORTHO05D010666 4.4e-71 271.9 232 62.9
FvH4_5g22901 Fragaria vesca HOM05D010052 ORTHO05D010666 1.3e-70 270.4 232 62.9
FAN13G1417 Fragaria x ananassa HOM05D010052 ORTHO05D010666 1.9e-66 256.5 221 62.9
FAN18G4184 Fragaria x ananassa HOM05D003158 ORTHO05D003560 2.5e-66 256.1 219 63.5
RcHm_v2.0_Chr7g0211341 Rosa chinensis HOM05D010052 ORTHO05D010666 1.5e-58 230.3 201 61.2
RcHm_v2.0_Chr3g0475771 Rosa chinensis HOM05D010052 ORTHO05D010666 1.5e-47 193.7 207 51.2
MD14G1037800 Malus domestica HOM05D010052 ORTHO05D010666 7.4e-42 174.9 246 42.3
MD14G1037900 Malus domestica HOM05D010052 ORTHO05D010666 1.2e-39 167.5 224 43.8
MD12G1039100 Malus domestica HOM05D010052 ORTHO05D010666 1.5e-39 167.2 224 44.6
Prupe.7G096500 Prunus persica HOM05D010052 ORTHO05D010666 1.7e-38 163.7 180 47.2
Prupe.7G096300 Prunus persica HOM05D010052 ORTHO05D010666 2.2e-38 163.3 228 41.7
Prupe.7G096700 Prunus persica HOM05D010052 ORTHO05D010666 7.9e-36 154.8 172 48.3
Prupe.7G048100 Prunus persica HOM05D010052 ORTHO05D010666 4.5e-23 112.5 230 32.6
MD12G1087900 Malus domestica HOM05D010052 ORTHO05D010666 6.5e-22 108.6 230 31.7
FvH4_6g24970 Fragaria vesca HOM05D010052 ORTHO05D010666 1.4e-21 107.5 238 31.9
FAN14G1910 Fragaria x ananassa HOM05D010052 ORTHO05D010666 3.2e-21 106.3 226 32.3
MD07G1151300 Malus domestica HOM05D010052 ORTHO05D010666 1.0e-19 101.3 229 31.4
FAN09G4754 Fragaria x ananassa HOM05D010052 ORTHO05D010666 1.4e-19 100.9 238 31.5
TAR633G0472 Trochodendron aralioides HOM05D002687 ORTHO05D002052 2.2e-17 93.6 196 32.1
CSS0030865 Camellia sinensis var. sinensis HOM05D002687 ORTHO05D002052 1.2e-15 87.8 194 29.4
CSS0032031 Camellia sinensis var. sinensis HOM05D002687 ORTHO05D002052 1.2e-15 87.8 194 29.4
Cpa.g.sc104.41 Carica papaya HOM05D015120 ORTHO05D010825 2.6e-15 86.7 224 33.0
MELO3C009533.2 Cucumis melo HOM05D008136 ORTHO05D002052 7.7e-15 85.1 165 32.7
BcaB02g10079 Brassica carinata HOM05D002687 ORTHO05D002052 1.3e-14 84.3 209 28.2
Cpa.g.sc1142.1 Carica papaya HOM05D002687 ORTHO05D002052 2.2e-14 83.6 188 30.3
ClCG10G018400 Citrullus lanatus HOM05D008136 ORTHO05D002052 2.2e-14 83.6 189 30.7
CsaV3_3G037890 Cucumis sativus L. HOM05D008136 ORTHO05D002052 2.9e-14 83.2 165 32.7
TAR633G0261 Trochodendron aralioides HOM05D002687 ORTHO05D002052 6.5e-14 82.0 187 27.8
TAR636G0437 Trochodendron aralioides HOM05D002687 ORTHO05D002052 6.5e-14 82.0 199 29.1
TAR636G3204 Trochodendron aralioides HOM05D002687 ORTHO05D002052 6.5e-14 82.0 199 29.1
Ciclev10013330m.g Citrus clementina HOM05D015120 ORTHO05D010666 8.5e-14 81.6 210 28.6
Nitab4.5_0000158g0010 Nicotiana tabacum HOM05D002687 ORTHO05D002052 8.5e-14 81.6 198 26.3
Nitab4.5_0000893g0110 Nicotiana tabacum HOM05D002687 ORTHO05D002052 1.5e-13 80.9 196 26.5
Thecc.01G085100 Theobroma cacao HOM05D015120 ORTHO05D010666 1.5e-13 80.9 193 30.1
Nn6g34716 Nelumbo nucifera HOM05D002687 ORTHO05D002052 1.9e-13 80.5 189 27.5
PGSC0003DMG400019632 Solanum tuberosum HOM05D002687 ORTHO05D002052 1.9e-13 80.5 198 25.8
Aqoxy1G00685 Aquilegia oxysepala HOM05D002687 ORTHO05D002052 2.5e-13 80.1 202 27.2
TAR633G1301 Trochodendron aralioides HOM05D002687 ORTHO05D002052 4.2e-13 79.3 203 30.0
Cc01_g08570 Coffea canephora HOM05D002687 ORTHO05D002052 7.2e-13 78.6 191 27.2
Hma1.2p1_0097F.1_g048090 Hydrangea macrophylla HOM05D002687 ORTHO05D002052 7.2e-13 78.6 176 29.5
Solyc11g068900.1 Solanum lycopersicum HOM05D002687 ORTHO05D002052 7.2e-13 78.6 196 25.0
Sopen11g027610 Solanum pennellii HOM05D002687 ORTHO05D002052 7.2e-13 78.6 196 25.0
PSO339G2661 Papaver somniferum HOM05D002687 ORTHO05D002052 1.6e-12 77.4 203 25.6
PSO384G1068 Papaver somniferum HOM05D002687 ORTHO05D002052 2.1e-12 77.0 203 24.1
TAR623G1724 Trochodendron aralioides HOM05D002687 ORTHO05D002052 2.1e-12 77.0 155 27.7
Dinv17088 Davidia involucrata HOM05D002687 ORTHO05D002052 2.7e-12 76.6 208 25.5
FvH4_3g26690 Fragaria vesca HOM05D002687 ORTHO05D002052 2.7e-12 76.6 194 26.8
FAN11G1248 Fragaria x ananassa HOM05D002687 ORTHO05D002052 2.7e-12 76.6 194 26.8
Actinidia07275 Actinidia chinensis HOM05D002687 ORTHO05D002052 3.6e-12 76.3 165 26.7
BraA03t11881Z Brassica rapa HOM05D002687 ORTHO05D002052 3.6e-12 76.3 217 26.3
Lalb_Chr14g0376011 Lupinus albus HOM05D002687 ORTHO05D002052 3.6e-12 76.3 170 25.9
TAR623G0011 Trochodendron aralioides HOM05D002687 ORTHO05D002052 4.7e-12 75.9 192 26.6
FAN21G1704 Fragaria x ananassa HOM05D002687 ORTHO05D002052 6.1e-12 75.5 194 27.8
Sopen06g030470 Solanum pennellii HOM05D002687 ORTHO05D002052 8.0e-12 75.1 220 25.0
FAN16G1005 Fragaria x ananassa HOM05D002687 ORTHO05D002052 1.0e-11 74.7 197 25.4
PGSC0003DMG400005897 Solanum tuberosum HOM05D002687 ORTHO05D002052 1.4e-11 74.3 200 26.0
BcaB06g28135 Brassica carinata HOM05D002687 ORTHO05D002052 1.8e-11 73.9 195 26.2
Sc21g0006860 Simmondsia chinensis HOM05D002687 ORTHO05D002052 1.8e-11 73.9 194 26.8
AL4G21170 Arabidopsis lyrata HOM05D002687 ORTHO05D002052 2.3e-11 73.6 188 27.7
A03p26690 Brassica napus HOM05D002687 ORTHO05D002052 2.3e-11 73.6 190 27.9
Eucgr.J00543 Eucalyptus grandis HOM05D002687 ORTHO05D002052 2.3e-11 73.6 178 25.3
Glyma.19G199051 Glycine max HOM05D017388 ORTHO05D010666 2.3e-11 73.6 238 29.0
Nitab4.5_0000657g0070 Nicotiana tabacum HOM05D002687 ORTHO05D002052 2.3e-11 73.6 192 27.6
QL01p011302 Quercus lobata HOM05D002687 ORTHO05D002052 2.3e-11 73.6 222 24.8
TPR.G35568 Trifolium pratense HOM05D017388 ORTHO05D010666 2.3e-11 73.6 188 29.3
TWI79G0900 Tripterygium wilfordii HOM05D002687 ORTHO05D002052 2.3e-11 73.6 181 31.5
RcHm_v2.0_Chr5g0048091 Rosa chinensis HOM05D002687 ORTHO05D002052 3.0e-11 73.2 194 25.3
TAR369G0448 Trochodendron aralioides HOM05D002687 ORTHO05D002052 3.0e-11 73.2 194 25.8
Dinv08137 Davidia involucrata HOM05D002687 ORTHO05D002052 4.0e-11 72.8 201 26.4
ECA238G0184 Erigeron canadensis HOM05D002687 ORTHO05D002052 4.0e-11 72.8 186 28.0
Lsat_1_v5_gn_3_114060 Lactuca sativa HOM05D002687 ORTHO05D002052 4.0e-11 72.8 185 25.9
MD03G1153500 Malus domestica HOM05D002687 ORTHO05D002052 4.0e-11 72.8 207 24.6
Solyc06g074050.3 Solanum lycopersicum HOM05D002687 ORTHO05D002052 4.0e-11 72.8 188 26.1
BraA04t17653Z Brassica rapa HOM05D002687 ORTHO05D002052 5.2e-11 72.4 190 26.8
BcaB01g03061 Brassica carinata HOM05D002687 ORTHO05D002052 6.7e-11 72.0 216 26.9
BcaC02g10865 Brassica carinata HOM05D002687 ORTHO05D002052 6.7e-11 72.0 174 28.7
C04p24310 Brassica napus HOM05D002687 ORTHO05D002052 6.7e-11 72.0 174 28.7
BolC4t23929H Brassica oleracea HOM05D002687 ORTHO05D002052 6.7e-11 72.0 174 28.7
Lj1g0008918 Lotus japonicus HOM05D017388 ORTHO05D010666 6.7e-11 72.0 193 31.6
Nitab4.5_0000380g0140 Nicotiana tabacum HOM05D002687 ORTHO05D002052 6.7e-11 72.0 192 27.1
Psat3g029040 Pisum sativum HOM05D017388 ORTHO05D010666 6.7e-11 72.0 189 30.7
BcaC01g04930 Brassica carinata HOM05D002687 ORTHO05D002052 8.8e-11 71.6 188 26.6
BcaC02g08259 Brassica carinata HOM05D002687 ORTHO05D002052 8.8e-11 71.6 195 25.6
C03p31980 Brassica napus HOM05D002687 ORTHO05D002052 8.8e-11 71.6 188 26.6
C04p56620 Brassica napus HOM05D002687 ORTHO05D002052 8.8e-11 71.6 195 25.6
BolC3t15541H Brassica oleracea HOM05D002687 ORTHO05D002052 8.8e-11 71.6 188 26.6
BolC4t27189H Brassica oleracea HOM05D002687 ORTHO05D002052 8.8e-11 71.6 195 25.6
Nn2g14281 Nelumbo nucifera HOM05D002687 ORTHO05D002052 1.2e-10 71.2 190 26.8
Thhalv10002076m.g Eutrema salsugineum HOM05D002687 ORTHO05D002052 1.5e-10 70.9 192 27.1
Gorai.001G124500 Gossypium raimondii HOM05D002687 ORTHO05D002052 1.5e-10 70.9 195 27.7
Sp4g10070 Schrenkiella parvula HOM05D002687 ORTHO05D002052 1.5e-10 70.9 200 26.5
Atru.chr8.1376 Acer truncatum HOM05D015120 ORTHO05D010666 2.0e-10 70.5 177 29.9
AT2G27260 Arabidopsis thaliana HOM05D002687 ORTHO05D002052 2.0e-10 70.5 160 28.8
BcaB01g03060 Brassica carinata HOM05D002687 ORTHO05D002052 2.0e-10 70.5 195 26.7
MD00G1129000 Malus domestica HOM05D002687 ORTHO05D002052 2.0e-10 70.5 210 24.3
Medtr7g106140 Medicago truncatula HOM05D017388 ORTHO05D010666 2.0e-10 70.5 236 26.3
COL.COLO4_32398 Corchorus olitorius HOM05D010991 ORTHO05D010825 2.6e-10 70.1 237 24.9
Duzib170G0577 Durio zibethinus HOM05D002687 ORTHO05D002052 2.6e-10 70.1 195 27.2
QL07p036916 Quercus lobata HOM05D008136 ORTHO05D002052 3.3e-10 69.7 181 26.5
CAN.G1463.1 Capsicum annuum HOM05D002687 ORTHO05D002065 4.4e-10 69.3 177 27.7
Gohir.A07G112600 Gossypium hirsutum HOM05D002687 ORTHO05D002052 4.4e-10 69.3 198 28.3
Lj1C262G4 Lonicera japonica HOM05D002687 ORTHO05D002052 4.4e-10 69.3 164 26.2
Thecc.09G275200 Theobroma cacao HOM05D002687 ORTHO05D002052 4.4e-10 69.3 195 29.7
Aa31LG5G8690 Aethionema arabicum HOM05D002687 ORTHO05D002052 5.7e-10 68.9 182 26.4
A04p20800 Brassica napus HOM05D002687 ORTHO05D002052 5.7e-10 68.9 168 26.8
DCAR_010643 Daucus carota HOM05D002687 ORTHO05D002052 5.7e-10 68.9 174 27.0
Rhsim01G0201900 Rhododendron simsii HOM05D002687 ORTHO05D002052 5.7e-10 68.9 188 26.1
unitig_8.g3658 Utricularia gibba HOM05D002687 ORTHO05D002052 5.7e-10 68.9 205 27.8
Atru.chr3.3136 Acer truncatum HOM05D002687 ORTHO05D002052 9.7e-10 68.2 192 28.1
A07p18100 Brassica napus HOM05D002687 ORTHO05D002052 1.3e-09 67.8 209 25.8
BraA07t29528Z Brassica rapa HOM05D002687 ORTHO05D002052 1.3e-09 67.8 209 25.8
CiPaw.14G095600 Carya illinoinensis HOM05D002687 ORTHO05D002052 1.3e-09 67.8 173 27.2
CiPaw.14G095800 Carya illinoinensis HOM05D002687 ORTHO05D002052 1.3e-09 67.8 173 27.2
Oeu048843.1 Olea europaea HOM05D002687 ORTHO05D002052 1.7e-09 67.4 195 29.2
Lsat_1_v5_gn_2_38441 Lactuca sativa HOM05D002687 ORTHO05D002052 2.8e-09 66.6 189 26.5
MBI01_g04539_MAGBIO Magnolia biondii HOM05D002687 ORTHO05D002052 2.8e-09 66.6 198 23.7
VMungo1383G0805 Vigna mungo HOM05D017388 ORTHO05D010666 2.8e-09 66.6 171 27.5
Lj1g0025222 Lotus japonicus HOM05D008136 ORTHO05D002052 3.7e-09 66.2 160 26.2
Sc12g0004850 Simmondsia chinensis HOM05D002687 ORTHO05D002052 3.7e-09 66.2 172 28.5
Carub.0001s0701 Capsella rubella HOM05D002687 ORTHO05D002052 4.8e-09 65.9 170 27.6
CiPaw.14G095400 Carya illinoinensis HOM05D002687 ORTHO05D002052 4.8e-09 65.9 173 27.7
Rhsim13G0195600 Rhododendron simsii HOM05D002687 ORTHO05D002052 6.3e-09 65.5 186 25.8
SalBow3G2018 Salvia bowleyana HOM05D002687 ORTHO05D002052 6.3e-09 65.5 195 27.7
unitig_27.g25123 Utricularia gibba HOM05D000738 ORTHO05D000675 6.3e-09 65.5 194 27.3
Gohir.D07G116000 Gossypium hirsutum HOM05D002687 ORTHO05D002052 8.2e-09 65.1 195 27.2
Gohir.D09G097800 Gossypium hirsutum HOM05D002687 ORTHO05D002052 8.2e-09 65.1 186 28.5
Gorai.006G114600 Gossypium raimondii HOM05D002687 ORTHO05D002052 8.2e-09 65.1 186 28.5
Sabra16G0125800 Salix brachista HOM05D002687 ORTHO05D002052 8.2e-09 65.1 216 25.0
Duzib106G1810 Durio zibethinus HOM05D008136 ORTHO05D002052 1.1e-08 64.7 172 29.1
QL07p036935 Quercus lobata HOM05D002687 ORTHO05D002052 1.1e-08 64.7 193 23.3
Sabra06G0157200 Salix brachista HOM05D008136 ORTHO05D002052 1.1e-08 64.7 159 26.4
CiPaw.14G095900 Carya illinoinensis HOM05D002687 ORTHO05D002052 1.4e-08 64.3 173 27.2
Ciclev10013405m.g Citrus clementina HOM05D008136 ORTHO05D002052 1.4e-08 64.3 186 30.6
Oeu009048.1 Olea europaea HOM05D002687 ORTHO05D002052 1.4e-08 64.3 191 28.8
Potri.001G218300 Populus trichocarpa HOM05D002687 ORTHO05D002052 1.4e-08 64.3 216 24.5
Haze_23312 Corylus avellana HOM05D002687 ORTHO05D002052 1.8e-08 63.9 203 26.6
Duzib093G0447 Durio zibethinus HOM05D008136 ORTHO05D002052 1.8e-08 63.9 168 29.2
Cfa016686 Carpinus fangiana HOM05D002687 ORTHO05D002052 2.4e-08 63.5 216 23.1
CiPaw.10G094600 Carya illinoinensis HOM05D002687 ORTHO05D002052 2.4e-08 63.5 216 22.7
COL.COLO4_22662 Corchorus olitorius HOM05D002687 ORTHO05D002052 2.4e-08 63.5 208 26.9
CiPaw.14G096100 Carya illinoinensis HOM05D002687 ORTHO05D002052 3.1e-08 63.2 184 23.4
Manes.09G046600 Manihot esculenta HOM05D002687 ORTHO05D002052 3.1e-08 63.2 184 27.2
Ciclev10029176m.g Citrus clementina HOM05D002687 ORTHO05D002052 4.1e-08 62.8 195 26.7
SGA_v2.0_scaffold31G12844 Striga asiatica HOM05D012176 ORTHO05D014468 4.1e-08 62.8 181 26.0
CiPaw.13G131000 Carya illinoinensis HOM05D002687 ORTHO05D002052 5.3e-08 62.4 158 24.1
Migut.N02460 Erythranthe guttata HOM05D002687 ORTHO05D002052 7.0e-08 62.0 195 25.6
Rhsim03G0065900 Rhododendron simsii HOM05D008136 ORTHO05D002052 7.0e-08 62.0 154 26.6
ATR0772G197 Amborella trichopoda HOM05D002687 ORTHO05D002052 9.1e-08 61.6 167 27.5
MD12G1038800 Malus domestica HOM05D002687 ORTHO05D002052 1.2e-07 61.2 187 26.7
Prupe.6G142400 Prunus persica HOM05D002687 ORTHO05D002052 1.2e-07 61.2 196 24.0
CiPaw.10G016800 Carya illinoinensis HOM05D008136 ORTHO05D002052 1.6e-07 60.8 213 25.8
Eucgr.A02595 Eucalyptus grandis HOM05D008136 ORTHO05D002052 1.6e-07 60.8 218 25.2
Migut.J00709 Erythranthe guttata HOM05D012176 ORTHO05D002052 2.0e-07 60.5 156 26.9
THA.LOC104826444 Tarenaya hassleriana HOM05D002687 ORTHO05D002052 2.0e-07 60.5 184 23.4
Lalb_Chr06g0172611 Lupinus albus HOM05D008136 ORTHO05D002052 4.5e-07 59.3 172 24.4
QL01p011200 Quercus lobata HOM05D002687 ORTHO05D002052 4.5e-07 59.3 193 25.9
THA.LOC104800513 Tarenaya hassleriana HOM05D002687 ORTHO05D002052 4.5e-07 59.3 188 22.9
Cpa.g.sc104.46 Carica papaya HOM05D002687 ORTHO05D002052 5.9e-07 58.9 183 23.5
MSTRG.21015 Avicennia marina HOM05D002687 ORTHO05D002052 1.3e-06 57.8 180 27.2
Nn6g34711 Nelumbo nucifera HOM05D002687 ORTHO05D002052 1.3e-06 57.8 205 24.9
Prupe.7G096900 Prunus persica HOM05D018155 ORTHO05D020655 1.3e-06 57.8 165 24.8
SGA_v2.0_scaffold637G53306 Striga asiatica HOM05D002687 ORTHO05D002052 1.3e-06 57.8 180 27.2
Rhsim04G0206200 Rhododendron simsii HOM05D018759 ORTHO05D012721 1.7e-06 57.4 169 28.4
Atru.chr8.1380 Acer truncatum HOM05D008136 ORTHO05D002052 2.2e-06 57.0 183 24.6
CiPaw.09G020400 Carya illinoinensis HOM05D008136 ORTHO05D002052 2.2e-06 57.0 202 27.2
FAN05G5055 Fragaria x ananassa HOM05D010052 ORTHO05D010666 2.2e-06 57.0 117 35.9
Prupe.6G114100 Prunus persica HOM05D000980 ORTHO05D000649 2.2e-06 57.0 176 23.3
Thecc.05G103000 Theobroma cacao HOM05D008136 ORTHO05D002052 2.2e-06 57.0 231 25.5
MSTRG.5900 Avicennia marina HOM05D012176 ORTHO05D014468 2.9e-06 56.6 188 26.1
HanXRQChr14g0432161 Helianthus annuus HOM05D002687 ORTHO05D002052 2.9e-06 56.6 183 24.0
Oeu050407.1 Olea europaea HOM05D012176 ORTHO05D014468 2.9e-06 56.6 162 29.0
Solyc11g068893.1 Solanum lycopersicum HOM05D002687 ORTHO05D002052 2.9e-06 56.6 167 23.4
Aqoxy1G00679 Aquilegia oxysepala HOM05D002687 ORTHO05D002052 3.8e-06 56.2 176 27.3
CANSAT64G0025 Cannabis sativa HOM05D008136 ORTHO05D002052 3.8e-06 56.2 166 22.9
Ciclev10003786m.g Citrus clementina HOM05D002687 ORTHO05D024879 5.0e-06 55.8 168 26.8
Manes.08G032700 Manihot esculenta HOM05D008136 ORTHO05D002052 5.0e-06 55.8 179 25.1
RcHm_v2.0_Chr3g0475711 Rosa chinensis HOM05D002687 ORTHO05D002052 6.5e-06 55.5 187 22.5
arahy.Tifrunner.gnm1.ann1.HURS1T Arachis hypogaea HOM05D002265 ORTHO05D002400 8.5e-06 55.1 205 23.4
CiPaw.09G020300 Carya illinoinensis HOM05D002687 ORTHO05D002052 8.5e-06 55.1 210 23.8


User provided reference genes

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